View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5015-Insertion-7 (Length: 607)

Name: NF5015-Insertion-7
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5015-Insertion-7
NF5015-Insertion-7
[»] chr4 (26 HSPs)
chr4 (8-607)||(55084279-55084878)
chr4 (214-322)||(47800581-47800689)
chr4 (214-366)||(17883975-17884134)
chr4 (212-341)||(4798568-4798697)
chr4 (212-278)||(1137714-1137780)
chr4 (212-278)||(42121490-42121555)
chr4 (219-278)||(11158366-11158425)
chr4 (283-362)||(26520309-26520388)
chr4 (215-270)||(35571636-35571691)
chr4 (219-278)||(49219141-49219200)
chr4 (221-259)||(1313129-1313167)
chr4 (221-255)||(1313177-1313211)
chr4 (212-278)||(2996575-2996641)
chr4 (212-262)||(29467626-29467676)
chr4 (316-377)||(2987085-2987146)
chr4 (217-278)||(17822872-17822933)
chr4 (212-253)||(22236107-22236148)
chr4 (213-278)||(24929495-24929560)
chr4 (221-278)||(30207582-30207639)
chr4 (230-271)||(44249294-44249335)
chr4 (212-249)||(52746842-52746879)
chr4 (221-261)||(14011253-14011293)
chr4 (229-261)||(30377434-30377466)
chr4 (229-261)||(32421278-32421310)
chr4 (214-270)||(47145972-47146028)
chr4 (214-270)||(53673662-53673718)
[»] chr3 (34 HSPs)
chr3 (212-342)||(2128260-2128390)
chr3 (212-350)||(20669102-20669240)
chr3 (212-261)||(33883752-33883801)
chr3 (212-260)||(40665449-40665497)
chr3 (215-278)||(21367669-21367732)
chr3 (212-262)||(36139896-36139946)
chr3 (212-278)||(43115058-43115124)
chr3 (212-253)||(3044261-3044302)
chr3 (212-253)||(25925769-25925810)
chr3 (217-270)||(28622006-28622059)
chr3 (213-376)||(30573917-30574085)
chr3 (229-270)||(34924557-34924598)
chr3 (322-374)||(1508710-1508762)
chr3 (212-252)||(36101596-36101636)
chr3 (218-261)||(8007707-8007750)
chr3 (229-328)||(42808924-42809023)
chr3 (212-263)||(50952350-50952401)
chr3 (212-250)||(34954112-34954150)
chr3 (212-278)||(36887506-36887572)
chr3 (217-263)||(46031007-46031053)
chr3 (316-350)||(54194442-54194476)
chr3 (273-342)||(139916-139985)
chr3 (212-253)||(21574517-21574558)
chr3 (212-261)||(31010421-31010470)
chr3 (280-333)||(36189506-36189559)
chr3 (212-277)||(48048984-48049049)
chr3 (212-253)||(53952075-53952116)
chr3 (229-293)||(4013498-4013562)
chr3 (212-252)||(5166351-5166391)
chr3 (212-248)||(5391911-5391947)
chr3 (214-270)||(25453863-25453919)
chr3 (212-248)||(39723242-39723278)
chr3 (212-252)||(45432941-45432981)
chr3 (211-247)||(53736121-53736157)
[»] chr5 (33 HSPs)
chr5 (212-378)||(10771890-10772053)
chr5 (215-366)||(39105371-39105529)
chr5 (215-345)||(4014429-4014566)
chr5 (275-345)||(465882-465952)
chr5 (212-270)||(17258885-17258943)
chr5 (283-366)||(9202828-9202911)
chr5 (275-366)||(42582819-42582910)
chr5 (275-365)||(1465091-1465181)
chr5 (212-270)||(37611217-37611275)
chr5 (212-270)||(37787947-37788005)
chr5 (212-253)||(14331394-14331435)
chr5 (316-365)||(39248008-39248057)
chr5 (212-260)||(36638767-36638815)
chr5 (283-378)||(5963362-5963457)
chr5 (215-270)||(7984979-7985034)
chr5 (213-328)||(11615453-11615568)
chr5 (316-379)||(42573892-42573955)
chr5 (212-250)||(12467163-12467201)
chr5 (214-252)||(12521556-12521594)
chr5 (212-278)||(17368678-17368744)
chr5 (214-260)||(28413288-28413334)
chr5 (220-270)||(38104867-38104917)
chr5 (212-253)||(4619734-4619775)
chr5 (212-253)||(10125720-10125761)
chr5 (221-270)||(10363761-10363810)
chr5 (215-260)||(34160751-34160796)
chr5 (212-253)||(37526201-37526242)
chr5 (212-253)||(37690638-37690679)
chr5 (322-366)||(3735620-3735664)
chr5 (229-257)||(6593322-6593350)
chr5 (214-278)||(15308997-15309061)
chr5 (280-340)||(37112335-37112395)
chr5 (212-244)||(41225088-41225120)
[»] chr1 (34 HSPs)
chr1 (213-366)||(10744215-10744368)
chr1 (212-263)||(6292510-6292561)
chr1 (316-374)||(5894276-5894334)
chr1 (212-270)||(10199410-10199468)
chr1 (212-278)||(25479583-25479649)
chr1 (212-258)||(31517742-31517788)
chr1 (212-280)||(30257683-30257751)
chr1 (212-252)||(37593686-37593726)
chr1 (229-266)||(33975584-33975621)
chr1 (212-261)||(46252684-46252733)
chr1 (212-255)||(11639418-11639461)
chr1 (214-253)||(15361067-15361106)
chr1 (212-327)||(27140431-27140546)
chr1 (211-278)||(38247054-38247121)
chr1 (212-261)||(7472330-7472380)
chr1 (228-266)||(13363442-13363480)
chr1 (283-345)||(23544720-23544782)
chr1 (288-366)||(33186173-33186251)
chr1 (212-278)||(37842357-37842423)
chr1 (215-261)||(38503470-38503516)
chr1 (220-270)||(41195203-41195253)
chr1 (212-253)||(1565537-1565578)
chr1 (212-261)||(4622112-4622161)
chr1 (212-261)||(8016276-8016325)
chr1 (213-278)||(23902070-23902135)
chr1 (212-261)||(28689454-28689503)
chr1 (217-270)||(45975700-45975753)
chr1 (229-293)||(13975634-13975698)
chr1 (219-251)||(15799730-15799762)
chr1 (330-366)||(24552477-24552513)
chr1 (214-270)||(28077073-28077129)
chr1 (219-263)||(31294530-31294574)
chr1 (214-278)||(35351041-35351105)
chr1 (318-366)||(47498958-47499006)
[»] chr8 (34 HSPs)
chr8 (212-366)||(37353251-37353411)
chr8 (216-343)||(21653011-21653145)
chr8 (283-366)||(10114397-10114479)
chr8 (212-253)||(20672777-20672818)
chr8 (317-380)||(2833444-2833507)
chr8 (212-270)||(42215084-42215142)
chr8 (317-366)||(2840266-2840315)
chr8 (317-366)||(2844953-2845002)
chr8 (217-270)||(27028841-27028894)
chr8 (219-260)||(31862513-31862554)
chr8 (213-261)||(2458569-2458617)
chr8 (218-270)||(11494156-11494208)
chr8 (290-350)||(26215419-26215479)
chr8 (318-366)||(40859833-40859881)
chr8 (223-278)||(7714244-7714299)
chr8 (215-278)||(9956819-9956882)
chr8 (212-255)||(30389124-30389167)
chr8 (215-270)||(33714241-33714296)
chr8 (283-350)||(37444495-37444562)
chr8 (213-260)||(43413028-43413074)
chr8 (212-254)||(9700027-9700069)
chr8 (212-270)||(10075553-10075611)
chr8 (220-278)||(26473762-26473820)
chr8 (212-270)||(28784798-28784855)
chr8 (300-342)||(34522153-34522195)
chr8 (215-253)||(42215311-42215349)
chr8 (212-261)||(11493984-11494033)
chr8 (212-253)||(12851203-12851244)
chr8 (280-372)||(7646107-7646199)
chr8 (217-261)||(8062543-8062587)
chr8 (282-366)||(14482110-14482193)
chr8 (213-261)||(39866737-39866785)
chr8 (212-260)||(41606905-41606953)
chr8 (212-252)||(43052728-43052768)
[»] chr2 (33 HSPs)
chr2 (229-350)||(32364750-32364871)
chr2 (98-181)||(7964100-7964183)
chr2 (512-607)||(7964336-7964431)
chr2 (215-270)||(9174825-9174880)
chr2 (212-263)||(19333327-19333378)
chr2 (215-270)||(35379021-35379076)
chr2 (212-278)||(33942152-33942218)
chr2 (275-345)||(36114595-36114665)
chr2 (212-253)||(42907388-42907429)
chr2 (213-261)||(12313176-12313224)
chr2 (214-270)||(44443331-44443387)
chr2 (212-255)||(1647261-1647304)
chr2 (283-342)||(11344364-11344423)
chr2 (212-278)||(5826219-5826285)
chr2 (215-261)||(7928304-7928350)
chr2 (212-270)||(22681187-22681245)
chr2 (220-270)||(33319822-33319872)
chr2 (212-270)||(34652038-34652096)
chr2 (280-350)||(36114342-36114412)
chr2 (284-366)||(39567810-39567892)
chr2 (215-253)||(43511112-43511150)
chr2 (213-255)||(43529861-43529903)
chr2 (212-261)||(5781688-5781737)
chr2 (215-252)||(9395158-9395195)
chr2 (212-261)||(10198482-10198531)
chr2 (215-308)||(16451090-16451183)
chr2 (219-260)||(16503372-16503413)
chr2 (212-261)||(41809247-41809296)
chr2 (229-278)||(43985022-43985071)
chr2 (214-278)||(1625902-1625966)
chr2 (212-260)||(5133792-5133840)
chr2 (212-252)||(8820294-8820334)
chr2 (235-295)||(41216710-41216770)
[»] chr6 (22 HSPs)
chr6 (229-376)||(264268-264414)
chr6 (212-270)||(6647397-6647455)
chr6 (212-261)||(4420662-4420711)
chr6 (215-350)||(9093561-9093703)
chr6 (212-270)||(3528813-3528871)
chr6 (212-278)||(20368182-20368248)
chr6 (212-252)||(13908491-13908531)
chr6 (212-252)||(28641751-28641791)
chr6 (265-328)||(8349726-8349789)
chr6 (221-255)||(323597-323631)
chr6 (212-246)||(821833-821867)
chr6 (212-278)||(2112202-2112268)
chr6 (212-342)||(32386108-32386238)
chr6 (229-270)||(1497991-1498032)
chr6 (212-261)||(31624109-31624158)
chr6 (233-278)||(31812036-31812081)
chr6 (283-364)||(32206100-32206181)
chr6 (212-248)||(696634-696670)
chr6 (212-252)||(6536975-6537015)
chr6 (212-252)||(9027606-9027646)
chr6 (215-263)||(9912196-9912244)
chr6 (318-366)||(35069459-35069507)
[»] chr7 (19 HSPs)
chr7 (213-270)||(39907813-39907870)
chr7 (228-271)||(2012633-2012676)
chr7 (316-366)||(44777095-44777145)
chr7 (213-270)||(15075088-15075145)
chr7 (229-278)||(20881655-20881704)
chr7 (215-278)||(39967922-39967985)
chr7 (232-279)||(48917368-48917415)
chr7 (216-270)||(529385-529439)
chr7 (212-270)||(6552294-6552352)
chr7 (212-270)||(7244690-7244748)
chr7 (220-270)||(22283754-22283804)
chr7 (211-261)||(35007617-35007666)
chr7 (212-270)||(38010724-38010782)
chr7 (212-278)||(44151482-44151548)
chr7 (273-334)||(28613604-28613665)
chr7 (212-248)||(11048059-11048095)
chr7 (322-366)||(21568757-21568801)
chr7 (218-270)||(27378836-27378888)
chr7 (212-248)||(43219646-43219682)
[»] scaffold0003 (1 HSPs)
scaffold0003 (219-277)||(306329-306387)
[»] scaffold0159 (1 HSPs)
scaffold0159 (212-261)||(27020-27069)
[»] scaffold0024 (1 HSPs)
scaffold0024 (236-345)||(21311-21420)


Alignment Details
Target: chr4 (Bit Score: 530; Significance: 0; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 8 - 607
Target Start/End: Original strand, 55084279 - 55084878
Alignment:
Q  8 ccaccctcatattaatttaatttgactattatcatgttgttgtgacattgctatattttgctttgtttcttcaattaggtcttcgttttagtgctattag 107  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  55084279 ccaccctcatattaatttaatttgactattatcatgttgtggtgacattgctatgttttgctttgtttcttcaattaggtcttcgttttagtgctattag 55084378  T
Q  108 atcttccaggactactctttttctcaacatatactcttctagtccttttttgggctgaaatttatcatcaggcaagtcaaacttctaaaaactatttatg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55084379 atcttccaggactactctttttctcaacatatactcttctagtccttttttgggctgaaatttatcatcaggcaagtcaaacttctaaaaactatttatg 55084478  T
Q  208 acatacatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaacttaaacaaaaacaatttaacttgcttttatct 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  55084479 acatacatgttcataagctggtttcagcttattttcataagctctctaagatagctcatgaaaacaacttaaacaaaaacaatttaacttgcttttatct 55084578  T
Q  308 tctgtcaaagaaatagcttatgcataagcgcttatcatcataatcacttatgctataagtttcaaattaagcacttatgctttaaacctataagtcacaa 407  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55084579 tctgtcaaagaaatagcttatgcataagcgcttatcatgataatcacttatgctataagtttcaaattaagcacttatgctttaaacctataagtcacaa 55084678  T
Q  408 attgagatgtttatccaaacaccattaactgtatggannnnnnnnnnnnnngggctttgattcttttgacttcttttatcagaaaattatttaattttat 507  Q
    |||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||    
T  55084679 attgagatgtttatccaaacaccattaactgtatggattttttctttttttgggctttgattcttttgacttcttttatcagaaaattatttaattttat 55084778  T
Q  508 tcgaatgactgagcaggcaaggagtttaccaactaatatgctcaagataatttatatttcaataaatgctgccttgtatattatccaggtatctatctca 607  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  55084779 tcgaatgactgagcaggcaaggagtttaccaactgatatgctcaagataatttatatttcaataaatgctgccttgtatattatccaggtatctaactca 55084878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 322
Target Start/End: Complemental strand, 47800689 - 47800581
Alignment:
Q  214 atgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaacttaaacaaaaacaatttaacttgcttttatcttctgtc 313  Q
    ||||| |||||| | ||||||||||||||||||||||||  ||||||| | |||||| || |||| ||||||||| ||||||||  ||||||||| |||     
T  47800689 atgtttataagcggttttcagcttattttcataagctcttcaagatagcttatgaaaacagcttatacaaaaacattttaactttattttatcttttgtt 47800590  T
Q  314 aaagaaata 322  Q
    | |||||||    
T  47800589 atagaaata 47800581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 214 - 366
Target Start/End: Complemental strand, 17884134 - 17883975
Alignment:
Q  214 atgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaact-------taaacaaaaacaatttaacttgcttttatc 306  Q
    ||||||||||| || |||||||| |||||||||||||||| || |||| | |||||| |||||       || ||||||||||||||||||  |||||||    
T  17884134 atgttcataagttgttttcagctaattttcataagctctccaatatagcttatgaaaacaactgataacttatacaaaaacaatttaactttattttatc 17884035  T
Q  307 ttctgtcaaagaaatagcttatgcataagcgcttatcatcataatcacttatgctataag 366  Q
    || ||| | ||||||||||||  ||| ||| |||| ||| ||||   |||||||||||||    
T  17884034 ttttgttatagaaatagcttacacatgagcacttaccatgataagtccttatgctataag 17883975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 212 - 341
Target Start/End: Original strand, 4798568 - 4798697
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaacttaaacaaaaacaatttaacttgcttttatcttctg 311  Q
    |||||| ||||||||| ||| ||||||||| ||||||||||| ||||||| | |||||| ||||||  |  |||||| ||  ||||  ||||||||| ||    
T  4798568 acatgtacataagctgttttgagcttatttgcataagctctccaagatagcttatgaaaacaacttgcaggaaaacatttagactttattttatcttttg 4798667  T
Q  312 tcaaagaaatagcttatgcataagcgctta 341  Q
      | ||||||||||||| ||||||| ||||    
T  4798668 atatagaaatagcttatacataagcactta 4798697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 1137780 - 1137714
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    ||||||||||||| || |||||| |||||| ||||||||||||  ||||||| ||||||||| ||||    
T  1137780 acatgttcataagttgttttcagtttatttccataagctctcttggatagtttatgaaagcagctta 1137714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 42121555 - 42121490
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    |||||||||||||||| ||||||||||||| || ||| |||| ||||||| |||||||| |||||||    
T  42121555 acatgttcataagctg-tttcagcttatttccacaagttctccaagatagctcatgaaaacaactta 42121490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 11158366 - 11158425
Alignment:
Q  219 cataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    ||||| ||| ||||||||||||| || |||||||||||||||| | |||||| |||||||    
T  11158366 cataaactgttttcagcttatttccacaagctctctaagatagcttatgaaaacaactta 11158425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 26520309 - 26520388
Alignment:
Q  283 aaaacaatttaacttgcttttatcttctgtcaaagaaatagcttatgcataagcgcttatcatcataatcacttatgcta 362  Q
    |||||||||||||||  ||| ||||| ||| | ||||| || |||| |||||| ||||||||| |||| |||||||||||    
T  26520309 aaaacaatttaactttatttcatcttttgttatagaaacagtttatacataagtgcttatcatgataaacacttatgcta 26520388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 35571636 - 35571691
Alignment:
Q  215 tgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    ||||||| ||||||||||| |||||||||| ||| |||||||||||| | ||||||    
T  35571636 tgttcatgagctggtttcaacttattttcacaagttctctaagatagcttatgaaa 35571691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 278
Target Start/End: Complemental strand, 49219200 - 49219141
Alignment:
Q  219 cataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    |||||| || ||||||||||||| ||||| |||| |||||||||| |||||| |||||||    
T  49219200 cataagttgttttcagcttatttccataatctctttaagatagtttatgaaaacaactta 49219141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 259
Target Start/End: Complemental strand, 1313167 - 1313129
Alignment:
Q  221 taagctggtttcagcttattttcataagctctctaagat 259  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  1313167 taagctggtttgagcttattttcaaaagctctctaagat 1313129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 255
Target Start/End: Complemental strand, 1313211 - 1313177
Alignment:
Q  221 taagctggtttcagcttattttcataagctctcta 255  Q
    |||||||||||||||||||||||| ||||||||||    
T  1313211 taagctggtttcagcttattttcaaaagctctcta 1313177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 2996641 - 2996575
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    |||||| ||||||||  ||||| |||||||||||| |||||| ||||||| | |||||| |||||||    
T  2996641 acatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaacaactta 2996575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 29467626 - 29467676
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagt 262  Q
    |||||| ||||||||| ||||||||||||| ||||| ||||||| ||||||    
T  29467626 acatgtccataagctgttttcagcttatttccataaactctctaggatagt 29467676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 377
Target Start/End: Complemental strand, 2987146 - 2987085
Alignment:
Q  316 agaaatagcttatgcataagcgcttatcatcataatcacttatgctataagtttcaaattaa 377  Q
    |||||||||||||  ||||| ||||||||| |||| |||||||| |||||| | ||||||||    
T  2987146 agaaatagcttataaataagtgcttatcatgataaacacttatgttataagctgcaaattaa 2987085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 17822872 - 17822933
Alignment:
Q  217 ttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    ||||||||||  ||| |||||||||||||||| |||| ||||||| | |||||| |||||||    
T  17822872 ttcataagctttttttagcttattttcataagttctccaagatagcttatgaaaacaactta 17822933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 22236107 - 22236148
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctc 253  Q
    |||||||||| ||||| |||| ||||||||||||||||||||    
T  22236107 acatgttcatgagctgttttctgcttattttcataagctctc 22236148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 24929560 - 24929495
Alignment:
Q  213 catgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    |||||||||||  || ||||||||||||| |||||||||||||  | |||| |||||| |||||||    
T  24929560 catgttcataaattgttttcagcttatttccataagctctctagtagagtttatgaaaacaactta 24929495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 278
Target Start/End: Original strand, 30207582 - 30207639
Alignment:
Q  221 taagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    ||||||| ||||||||||||| ||||| ||||||||| ||| | |||||| |||||||    
T  30207582 taagctgttttcagcttatttccataatctctctaaggtagcttatgaaaacaactta 30207639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 44249335 - 44249294
Alignment:
Q  230 ttcagcttattttcataagctctctaagatagttcatgaaag 271  Q
    |||||||||||||||||| ||||| ||||||||| |||||||    
T  44249335 ttcagcttattttcataaactctccaagatagtttatgaaag 44249294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 249
Target Start/End: Original strand, 52746842 - 52746879
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagc 249  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  52746842 acatgttcataagctgttttcagctgattttcataagc 52746879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 14011293 - 14011253
Alignment:
Q  221 taagctggtttcagcttattttcataagctctctaagatag 261  Q
    ||||||| ||||||||||||| ||||||||||| |||||||    
T  14011293 taagctgttttcagcttatttccataagctctccaagatag 14011253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 30377434 - 30377466
Alignment:
Q  229 tttcagcttattttcataagctctctaagatag 261  Q
    ||||||||||||||||||||||||| |||||||    
T  30377434 tttcagcttattttcataagctctccaagatag 30377466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 32421278 - 32421310
Alignment:
Q  229 tttcagcttattttcataagctctctaagatag 261  Q
    ||||||||||||||||||| |||||||||||||    
T  32421278 tttcagcttattttcataacctctctaagatag 32421310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 47146028 - 47145972
Alignment:
Q  214 atgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    ||||||||||| || ||||| ||||||||||||||||||  |||| |||| ||||||    
T  47146028 atgttcataagttgttttcaccttattttcataagctcttcaagacagtttatgaaa 47145972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 53673662 - 53673718
Alignment:
Q  214 atgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    |||| |||||| || ||||||||||||| ||||||||||| ||||||| | ||||||    
T  53673662 atgtccataagttgttttcagcttatttacataagctctccaagatagcttatgaaa 53673718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 212 - 342
Target Start/End: Original strand, 2128260 - 2128390
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaacttaaacaaaaacaatttaacttgcttttatcttctg 311  Q
    |||||||||||||||| |||||||||||||||||| | |||  ||||| | | |||||| || |||| |  |||||||||||||||  ||||||||| ||    
T  2128260 acatgttcataagctgttttcagcttattttcatacgttctaaaagatggcttatgaaaacagcttacagtaaaacaatttaactttattttatcttttg 2128359  T
Q  312 tcaaagaaatagcttatgcataagcgcttat 342  Q
    | | ||||||||||||| ||||| |||||||    
T  2128360 ttatagaaatagcttatacataaacgcttat 2128390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 212 - 350
Target Start/End: Complemental strand, 20669240 - 20669102
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaacttaaacaaaaacaatttaacttgcttttatcttctg 311  Q
    |||||||||||||||| |||| |||||||| ||||||||||| ||||||| | |||||| || |||| |  | |||| ||| ||||  || ||| |  ||    
T  20669240 acatgttcataagctgttttccgcttatttacataagctctccaagatagcttatgaaaacagcttatatgacaacattttgactttattgtatatcttg 20669141  T
Q  312 tcaaagaaatagcttatgcataagcgcttatcatcataa 350  Q
    | | ||||||||||||| |||||| ||||||||| ||||    
T  20669140 ttatagaaatagcttatacataagtgcttatcatgataa 20669102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 33883752 - 33883801
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatag 261  Q
    ||||||||||||| || |||||||||||||||||||| ||||||||||||    
T  33883752 acatgttcataagttgttttcagcttattttcataagttctctaagatag 33883801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 40665497 - 40665449
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagata 260  Q
    |||||||||||||||| |||||||||||||| |||||||||| ||||||    
T  40665497 acatgttcataagctgttttcagcttatttttataagctctccaagata 40665449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 21367732 - 21367669
Alignment:
Q  215 tgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    |||||| |||||| |||||||||||||||||||| |||| ||||||| | |||||| |||||||    
T  21367732 tgttcacaagctgttttcagcttattttcataagttctccaagatagcttatgaaaacaactta 21367669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 36139946 - 36139896
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagt 262  Q
    ||||||||| |||||| ||||||||||||||||||||||||  ||||||||    
T  36139946 acatgttcacaagctgttttcagcttattttcataagctcttcaagatagt 36139896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 43115124 - 43115058
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    |||||| |||||  || ||||||||||||| ||||||||||| | |||||||||||||| |||||||    
T  43115124 acatgtccataacttgttttcagcttatttccataagctctcaatgatagttcatgaaaacaactta 43115058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 3044261 - 3044302
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctc 253  Q
    |||||||||||||||| ||||| |||||||||||||||||||    
T  3044261 acatgttcataagctgttttcaacttattttcataagctctc 3044302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 25925810 - 25925769
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctc 253  Q
    |||||||||||||||| ||||| |||||||||||||||||||    
T  25925810 acatgttcataagctgttttcaacttattttcataagctctc 25925769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 28622006 - 28622059
Alignment:
Q  217 ttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    ||||||||||| |||||| ||||||||||||| |||| ||||||||| ||||||    
T  28622006 ttcataagctgttttcaggttattttcataagttctcgaagatagtttatgaaa 28622059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 213 - 376
Target Start/End: Original strand, 30573917 - 30574085
Alignment:
Q  213 catgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaac-------ttaaacaaaaacaatttaacttgcttttat 305  Q
    ||||||||||||||| ||||||||||| ||||| ||||||| ||||||| | |||||| || |       ||| | ||||| || |||||||  ||||||    
T  30573917 catgttcataagctgttttcagcttatgttcatcagctctccaagatagcttatgaaaacatcatatagattataaaaaaaaaacttaactttattttat 30574016  T
Q  306 cttctgtcaaagaaatagcttatgcataagcgcttatcatcataatcacttatgctataagtttcaaatta 376  Q
    ||| |   | ||||||||||||| |||||||||||||||| ||||   |||||| |||||| | |||||||    
T  30574017 cttttt--atagaaatagcttatacataagcgcttatcatgataaatgcttatgatataagctgcaaatta 30574085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 34924557 - 34924598
Alignment:
Q  229 tttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    ||||||||||||||||||||||||||||||||| | ||||||    
T  34924557 tttcagcttattttcataagctctctaagatagcttatgaaa 34924598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 1508710 - 1508762
Alignment:
Q  322 agcttatgcataagcgcttatcatcataatcacttatgctataagtttcaaat 374  Q
    ||||||| |||||||||||||||| |||| ||||| ||||||||||| |||||    
T  1508710 agcttatacataagcgcttatcatgataagcacttgtgctataagttgcaaat 1508762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 36101636 - 36101596
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctct 252  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  36101636 acatgttcacaagctgttttcagcttattttcataagctct 36101596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 261
Target Start/End: Original strand, 8007707 - 8007750
Alignment:
Q  218 tcataagctggtttcagcttattttcataagctctctaagatag 261  Q
    |||||||||  |||||| ||||||||||||||||||||||||||    
T  8007707 tcataagcttatttcagtttattttcataagctctctaagatag 8007750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 328
Target Start/End: Complemental strand, 42809023 - 42808924
Alignment:
Q  229 tttcagcttattttcataagctctctaagatagttcatgaaagcaacttaaacaaaaacaatttaacttgcttttatcttctgtcaaagaaatagcttat 328  Q
    |||||||||||||| | ||||||||  ||| || | |||||| || |||| | ||||||||||||||||  ||||||||| ||| | ||||| |||||||    
T  42809023 tttcagcttattttgacaagctctccgagagagcttatgaaaacagcttatataaaaacaatttaactttattttatcttttgttatagaaacagcttat 42808924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 50952401 - 50952350
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagtt 263  Q
    |||||||||||| ||| ||| ||||||||| ||||||||||| |||||||||    
T  50952401 acatgttcataaactgttttaagcttatttccataagctctccaagatagtt 50952350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 250
Target Start/End: Complemental strand, 34954150 - 34954112
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagct 250  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  34954150 acatgttcatgagctgttttcagcttattttcataagct 34954112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 36887572 - 36887506
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    ||||||||||||| || |||||||||||||||||||| |||  ||||| | | |||||| |||||||    
T  36887572 acatgttcataagatgttttcagcttattttcataagttcttcaagatggcttatgaaaacaactta 36887506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 46031053 - 46031007
Alignment:
Q  217 ttcataagctggtttcagcttattttcataagctctctaagatagtt 263  Q
    ||||||||||| |||||||||||||| ||||| |||| |||||||||    
T  46031053 ttcataagctgttttcagcttattttaataagttctccaagatagtt 46031007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 350
Target Start/End: Complemental strand, 54194476 - 54194442
Alignment:
Q  316 agaaatagcttatgcataagcgcttatcatcataa 350  Q
    ||||||||||||| |||||||||||||||||||||    
T  54194476 agaaatagcttatacataagcgcttatcatcataa 54194442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 342
Target Start/End: Complemental strand, 139985 - 139916
Alignment:
Q  273 aacttaaacaaaaacaatttaacttgcttttatcttctgtcaaagaaatagcttatgcataagcgcttat 342  Q
    |||||| ||||| ||||||| ||||  ||||||||| ||| | ||||||||||||| |||||| ||||||    
T  139985 aacttatacaaatacaattttactttattttatcttgtgtaatagaaatagcttattcataagtgcttat 139916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 21574558 - 21574517
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctc 253  Q
    |||||||||||||||| ||| ||||||||| |||||||||||    
T  21574558 acatgttcataagctgcttttagcttatttccataagctctc 21574517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 31010470 - 31010421
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatag 261  Q
    |||||| ||||||||| |||||||||| || ||||||||||||| |||||    
T  31010470 acatgtccataagctgttttcagcttaattccataagctctctatgatag 31010421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 36189559 - 36189506
Alignment:
Q  280 acaaaaacaatttaacttgcttttatcttctgtcaaagaaatagcttatgcata 333  Q
    ||||||||||||||||||  ||||||||| ||| | ||||||||||||| ||||    
T  36189559 acaaaaacaatttaactttattttatcttttgtaagagaaatagcttatacata 36189506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 277
Target Start/End: Original strand, 48048984 - 48049049
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactt 277  Q
    |||||| ||||||||| ||||||||||||| ||||| ||| | ||||||| | |||||| ||||||    
T  48048984 acatgtccataagctgttttcagcttatttccataacctccccaagatagctaatgaaaacaactt 48049049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 53952116 - 53952075
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctc 253  Q
    |||||||||| ||||| ||||||||||||||||||| |||||    
T  53952116 acatgttcatgagctgttttcagcttattttcataaactctc 53952075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 4013498 - 4013562
Alignment:
Q  229 tttcagcttattttcataagctctctaagatagttcatgaaagcaacttaaacaaaaacaattta 293  Q
    |||||||||||||||| |||||||||| || || | |||||| || |||| | ||||||||||||    
T  4013498 tttcagcttattttcacaagctctctaggacagctaatgaaaacagcttatataaaaacaattta 4013562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 5166391 - 5166351
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctct 252  Q
    |||||||||||||||| ||||| |||||||||||| |||||    
T  5166391 acatgttcataagctgttttcatcttattttcatacgctct 5166351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 5391947 - 5391911
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataag 248  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  5391947 acatgttcataagctgttttcaacttattttcataag 5391911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 25453863 - 25453919
Alignment:
Q  214 atgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    ||||||| |||||  |||||||||||||||||||||| || | ||||||| ||||||    
T  25453863 atgttcacaagctcttttcagcttattttcataagctttccaggatagtttatgaaa 25453919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 39723242 - 39723278
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataag 248  Q
    |||||||||||||||| |||||||||||| |||||||    
T  39723242 acatgttcataagctgttttcagcttattctcataag 39723278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 45432941 - 45432981
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctct 252  Q
    ||||||||||||| || ||||||||||||| ||||||||||    
T  45432941 acatgttcataagttgttttcagcttatttccataagctct 45432981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 53736121 - 53736157
Alignment:
Q  211 tacatgttcataagctggtttcagcttattttcataa 247  Q
    |||||||||||||| || |||||||||||||||||||    
T  53736121 tacatgttcataagttgctttcagcttattttcataa 53736157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 212 - 378
Target Start/End: Original strand, 10771890 - 10772053
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaacttaaacaaaaacaatttaacttgcttttatcttctg 311  Q
    ||||||| |||||| |  |||||||||||||||||| ||||||  ||||| | |||||||||||||| |  ||||||||||||||   ||  || || ||    
T  10771890 acatgttgataagccgtgttcagcttattttcataaactctctcggatagcttatgaaagcaacttatatgaaaacaatttaact---ttacattttttg 10771986  T
Q  312 tcaaagaaatagcttatgcataagcgcttatcatcataatcacttatgctataagtttcaaattaag 378  Q
    | | ||||||||||||| |||| | | ||||||| |||| ||||||||||||||| | |||||||||    
T  10771987 ttatagaaatagcttatacatatgtgtttatcatgataagcacttatgctataagctgcaaattaag 10772053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 215 - 366
Target Start/End: Complemental strand, 39105529 - 39105371
Alignment:
Q  215 tgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaa-------cttaaacaaaaacaatttaacttgcttttatct 307  Q
    ||||||||||||  ||| |||||||||||||||| |||| ||||||| | |||||| ||        |||| || |||||||||||||||  ||| || |    
T  39105529 tgttcataagctatttttagcttattttcataagttctccaagatagcttatgaaaacagattatagcttatacgaaaacaatttaacttcatttcatat 39105430  T
Q  308 tctgtcaaagaaatagcttatgcataagcgcttatcatcataatcacttatgctataag 366  Q
    |  |  | ||||||||||||| |||||||||||||||| |||| |||||||||||||||    
T  39105429 ttagctatagaaatagcttatacataagcgcttatcatgataagcacttatgctataag 39105371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 345
Target Start/End: Original strand, 4014429 - 4014566
Alignment:
Q  215 tgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta-------aacaaaaacaatttaacttgcttttatct 307  Q
    ||||||||||||| |||||||||||||||||||| |||| ||||||| | |||||| || ||||         |||||||||| ||||||  ||||||||    
T  4014429 tgttcataagctgttttcagcttattttcataagttctccaagatagcttatgaaaacagcttatcatttttccaaaaacaatctaactttattttatct 4014528  T
Q  308 tctgtcaaagaaatagcttatgcataagcgcttatcat 345  Q
    | ||  | ||||||||||||| |||| |||||||||||    
T  4014529 tttgctatagaaatagcttatacataggcgcttatcat 4014566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 275 - 345
Target Start/End: Complemental strand, 465952 - 465882
Alignment:
Q  275 cttaaacaaaaacaatttaacttgcttttatcttctgtcaaagaaatagcttatgcataagcgcttatcat 345  Q
    |||| ||||||||||||||||||  ||||||||| ||||| |||||||||||||  ||||| |||||||||    
T  465952 cttatacaaaaacaatttaactttattttatcttttgtcatagaaatagcttatatataagtgcttatcat 465882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 17258885 - 17258943
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    |||||||||||||||| ||||||||||||||||||||||||  | ||||||| ||||||    
T  17258885 acatgttcataagctgttttcagcttattttcataagctcttcaggatagtttatgaaa 17258943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 283 - 366
Target Start/End: Original strand, 9202828 - 9202911
Alignment:
Q  283 aaaacaatttaacttgcttttatcttctgtcaaagaaatagcttatgcataagcgcttatcatcataatcacttatgctataag 366  Q
    |||||||||||||||  ||||||||| ||  | |||||||||||||  |||||| |||||||| |||| ||||| |||||||||    
T  9202828 aaaacaatttaactttattttatcttttgctacagaaatagcttatatataagcacttatcatgataaacacttgtgctataag 9202911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 275 - 366
Target Start/End: Complemental strand, 42582910 - 42582819
Alignment:
Q  275 cttaaacaaaaacaatttaacttgcttttatcttctgtcaaagaaatagcttatgcataagcgcttatcatcataatcacttatgctataag 366  Q
    ||||||| || ||||||||||||  ||| ||||| | |||  |||||||||||| ||||||||||||| || |||| | |||||||||||||    
T  42582910 cttaaacgaacacaatttaactttatttcatcttttatcatggaaatagcttatacataagcgcttattatgataaacgcttatgctataag 42582819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 365
Target Start/End: Original strand, 1465091 - 1465181
Alignment:
Q  275 cttaaacaaaaacaatttaacttgcttttatcttctgtcaaagaaatagcttatgcataagcgcttatcatcataatcacttatgctataa 365  Q
    |||| |||||| | |||||||||  ||||||| | ||  | ||||||||||||| |||||||||||||| | |||| ||||||||||||||    
T  1465091 cttacacaaaagcgatttaactttattttatcctatgctatagaaatagcttatacataagcgcttatcttgataagcacttatgctataa 1465181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 37611217 - 37611275
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    |||||||||||||||| |||||| |||||| ||||||||||| ||||||| | ||||||    
T  37611217 acatgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaa 37611275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 37787947 - 37788005
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    |||||||||||||||| |||||| |||||| ||||||||||| ||||||| | ||||||    
T  37787947 acatgttcataagctgttttcaggttatttccataagctctccaagatagcttatgaaa 37788005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 14331435 - 14331394
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctc 253  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  14331435 acatgtccataagctgatttcagcttattttcataagctctc 14331394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 39248057 - 39248008
Alignment:
Q  316 agaaatagcttatgcataagcgcttatcatcataatcacttatgctataa 365  Q
    ||||||||||| | ||||||||||||||||||||| || |||||||||||    
T  39248057 agaaatagcttttacataagcgcttatcatcataagcaattatgctataa 39248008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 36638815 - 36638767
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagata 260  Q
    |||||||||||||||  ||||||||||||| ||||||||||||| ||||    
T  36638815 acatgttcataagcttttttcagcttatttccataagctctctaggata 36638767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 378
Target Start/End: Original strand, 5963362 - 5963457
Alignment:
Q  283 aaaacaatttaacttgcttttatcttctgtcaaagaaatagcttatgcataagcgcttatcatcataatcacttatgctataagtttcaaattaag 378  Q
    |||||||||||||||  |||||||||   | | |||||||| || | |||||||||||||||| ||||   |||||||||||| || |||||||||    
T  5963362 aaaacaatttaactttattttatctttcattatagaaatagtttgtacataagcgcttatcatgataaatgcttatgctataaattgcaaattaag 5963457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 7985034 - 7984979
Alignment:
Q  215 tgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    ||||||||||||| |||||||||||||||||||  |||| ||||||| | ||||||    
T  7985034 tgttcataagctgttttcagcttattttcataaattctccaagatagcttatgaaa 7984979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 328
Target Start/End: Complemental strand, 11615568 - 11615453
Alignment:
Q  213 catgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaacttaaacaaaaacaatttaacttgcttttatcttctgt 312  Q
    ||||||||||||||| ||||||||||||| |||||||||   | ||||  | |||||| || |||| ||  ||||||||| ||||  ||||||||| |||    
T  11615568 catgttcataagctgttttcagcttatttccataagctcataaggatatcttatgaaaacagcttatacgtaaacaatttgactttattttatcttttgt 11615469  T
Q  313 caaagaaatagcttat 328  Q
     | | |||||||||||    
T  11615468 tataaaaatagcttat 11615453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 42573892 - 42573955
Alignment:
Q  316 agaaatagcttatgcataagcgcttatcatcataatcacttatgctataagtttcaaattaagc 379  Q
    ||||||||||||| |||||||||||||||| |||| | || | |||||||| | ||||||||||    
T  42573892 agaaatagcttatacataagcgcttatcatgataagcgctcaggctataagctgcaaattaagc 42573955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 250
Target Start/End: Complemental strand, 12467201 - 12467163
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagct 250  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  12467201 acatgtttataagctgttttcagcttattttcataagct 12467163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 252
Target Start/End: Complemental strand, 12521594 - 12521556
Alignment:
Q  214 atgttcataagctggtttcagcttattttcataagctct 252  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  12521594 atgttcataagctgttttcagcttatttccataagctct 12521556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 17368744 - 17368678
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    ||||||||||| || | ||||||||||||| ||||| ||||| ||||||| | |||||| |||||||    
T  17368744 acatgttcatatgcagttttcagcttatttccataacctctccaagatagcttatgaaaacaactta 17368678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 28413288 - 28413334
Alignment:
Q  214 atgttcataagctggtttcagcttattttcataagctctctaagata 260  Q
    |||||||||||||| ||||||||||||| ||||| ||||| ||||||    
T  28413288 atgttcataagctgttttcagcttatttccataaactctccaagata 28413334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 38104867 - 38104917
Alignment:
Q  220 ataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    ||||| || ||||||||||||| ||||||||||||||||||| | ||||||    
T  38104867 ataagttgttttcagcttatttccataagctctctaagatagcttatgaaa 38104917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 4619775 - 4619734
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctc 253  Q
    |||||||||||||||||||||| ||||||| |||||| ||||    
T  4619775 acatgttcataagctggtttcaccttatttccataagttctc 4619734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 10125720 - 10125761
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctc 253  Q
    ||||||| ||||| || |||||||||||||||||||||||||    
T  10125720 acatgttgataaggtgttttcagcttattttcataagctctc 10125761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 10363810 - 10363761
Alignment:
Q  221 taagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    ||||||| |||||||||||||||| ||| ||||| |||||||| ||||||    
T  10363810 taagctgttttcagcttattttcacaagttctctgagatagtttatgaaa 10363761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 34160796 - 34160751
Alignment:
Q  215 tgttcataagctggtttcagcttattttcataagctctctaagata 260  Q
    ||||||||| ||| |||||||||||||||||||| |||| ||||||    
T  34160796 tgttcataaactgttttcagcttattttcataagttctccaagata 34160751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 37526201 - 37526242
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctc 253  Q
    ||||||| |||||||| ||||||||||||| |||||||||||    
T  37526201 acatgttaataagctgttttcagcttatttccataagctctc 37526242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 37690638 - 37690679
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctc 253  Q
    ||||||| |||||||| ||||||||||||| |||||||||||    
T  37690638 acatgttaataagctgttttcagcttatttccataagctctc 37690679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 3735620 - 3735664
Alignment:
Q  322 agcttatgcataagcgcttatcatcataatcacttatgctataag 366  Q
    ||||||| |||||||||||||||| |||||| ||| |||||||||    
T  3735620 agcttatccataagcgcttatcatgataatctcttgtgctataag 3735664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 6593350 - 6593322
Alignment:
Q  229 tttcagcttattttcataagctctctaag 257  Q
    |||||||||||||||||||||||||||||    
T  6593350 tttcagcttattttcataagctctctaag 6593322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 15308997 - 15309061
Alignment:
Q  214 atgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    |||||||||| ||| ||||| |||||||||||||| |||| | ||||| | |||||| |||||||    
T  15308997 atgttcataacctgttttcatcttattttcataagatctcaatgatagctaatgaaaacaactta 15309061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 280 - 340
Target Start/End: Original strand, 37112335 - 37112395
Alignment:
Q  280 acaaaaacaatttaacttgcttttatcttctgtcaaagaaatagcttatgcataagcgctt 340  Q
    ||||||||||||||||||  ||||||||| ||    ||||||||||||| |||||||||||    
T  37112335 acaaaaacaatttaactttgttttatcttttgctgtagaaatagcttatacataagcgctt 37112395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 41225120 - 41225088
Alignment:
Q  212 acatgttcataagctggtttcagcttattttca 244  Q
    |||||||||||||||||||| ||||||||||||    
T  41225120 acatgttcataagctggttttagcttattttca 41225088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 213 - 366
Target Start/End: Complemental strand, 10744368 - 10744215
Alignment:
Q  213 catgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaacttaaacaaaaacaatttaacttgcttttatcttctgt 312  Q
    ||||||||||||||| ||||| |||||||| ||||| ||||||||| || | |||||| || |||| |  ||||||||| |||||  ||||||||| | |    
T  10744368 catgttcataagctgttttcatcttatttttataagttctctaagacagcttatgaaaacagcttataggaaaacaattcaactttattttatctttttt 10744269  T
Q  313 caaagaaatagcttatgcataagcgcttatcatcataatcacttatgctataag 366  Q
    ||   ||||||||||| ||| ||| ||| |||| |||| | |||||||||||||    
T  10744268 catcaaaatagcttatacattagcacttgtcatgataagcgcttatgctataag 10744215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 6292561 - 6292510
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagtt 263  Q
    |||||||||||||||| ||||||||||||||||||||||||| || ||||||    
T  6292561 acatgttcataagctgttttcagcttattttcataagctctccaaaatagtt 6292510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 316 - 374
Target Start/End: Original strand, 5894276 - 5894334
Alignment:
Q  316 agaaatagcttatgcataagcgcttatcatcataatcacttatgctataagtttcaaat 374  Q
    ||||||||||||| |||||||||||||||| |||| ||||| ||||||||| |||||||    
T  5894276 agaaatagcttatacataagcgcttatcatgataagcacttgtgctataagcttcaaat 5894334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 10199410 - 10199468
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    ||||||||||||| || |||||||||||||||||||||||||||| |||| | ||||||    
T  10199410 acatgttcataagttgttttcagcttattttcataagctctctaaaatagcttatgaaa 10199468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 25479649 - 25479583
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    |||||||||| || || ||||||||||||||||||||||||||| ||||| | |||||| |||||||    
T  25479649 acatgttcattagttgttttcagcttattttcataagctctctaggatagcttatgaaaacaactta 25479583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 31517742 - 31517788
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaaga 258  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||    
T  31517742 acatgttcataagctgttttcagcttattttcataagctctccaaga 31517788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 30257751 - 30257683
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaacttaaa 280  Q
    |||||||||||||||| |||||||||||||  |||||| ||| | ||||||| |||||| |||||||||    
T  30257751 acatgttcataagctgttttcagcttatttctataagccctccaggatagtttatgaaaacaacttaaa 30257683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 37593686 - 37593726
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctct 252  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  37593686 acatgttcataagctgttttcagcttattttcataagctct 37593726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 33975621 - 33975584
Alignment:
Q  229 tttcagcttattttcataagctctctaagatagttcat 266  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  33975621 tttcagcttattttcataagctctctaggatagttcat 33975584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 46252684 - 46252733
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatag 261  Q
    ||||||||||||| || |||||| |||||||||||||||||| |||||||    
T  46252684 acatgttcataagttgttttcaggttattttcataagctctccaagatag 46252733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 11639418 - 11639461
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctcta 255  Q
    |||||| ||||||||| ||| |||||||||||||||||||||||    
T  11639418 acatgtccataagctgtttttagcttattttcataagctctcta 11639461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 253
Target Start/End: Complemental strand, 15361106 - 15361067
Alignment:
Q  214 atgttcataagctggtttcagcttattttcataagctctc 253  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  15361106 atgttcataagttgttttcagcttattttcataagctctc 15361067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 327
Target Start/End: Complemental strand, 27140546 - 27140431
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaacttaaacaaaaacaatttaacttgcttttatcttctg 311  Q
    |||||| |||||| || ||||||||||||| ||||||||||| | ||||| | || ||| || |||| | |||||||||||||  |  ||||||||| ||    
T  27140546 acatgtccataagttgttttcagcttatttgcataagctctccatgatagcttataaaaacagcttatataaaaacaatttaatattattttatcttttg 27140447  T
Q  312 tcaaagaaatagctta 327  Q
    | | ||||||| ||||    
T  27140446 ttatagaaataactta 27140431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 38247054 - 38247121
Alignment:
Q  211 tacatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    |||| ||||||||| || ||||| |||| ||| |||||||||| | ||||| ||||||||||||||||    
T  38247054 tacacgttcataagttgttttcaacttacttttataagctctccacgatagatcatgaaagcaactta 38247121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 7472380 - 7472330
Alignment:
Q  212 acatgttcataag-ctggtttcagcttattttcataagctctctaagatag 261  Q
    ||||||||||||  ||| ||||||||||||||||||||||||| |||||||    
T  7472380 acatgttcataaaactgttttcagcttattttcataagctctccaagatag 7472330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 266
Target Start/End: Original strand, 13363442 - 13363480
Alignment:
Q  228 gtttcagcttattttcataagctctctaagatagttcat 266  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  13363442 gtttcagcttatttttataagctctccaagatagttcat 13363480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 283 - 345
Target Start/End: Original strand, 23544720 - 23544782
Alignment:
Q  283 aaaacaatttaacttgcttttatcttctgtcaaagaaatagcttatgcataagcgcttatcat 345  Q
    |||||||||| ||||  ||||||||| |  || ||||||||||||| ||||||||||||||||    
T  23544720 aaaacaatttgacttaattttatctttttccatagaaatagcttatacataagcgcttatcat 23544782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 366
Target Start/End: Complemental strand, 33186251 - 33186173
Alignment:
Q  288 aatttaacttgcttttatcttctgtcaaagaaatagcttatgcataagcgcttatcatcataatcacttatgctataag 366  Q
    |||||||||| |||||||| | ||  | ||||| |||||||||||||||| ||||||| |||| ||| | |||||||||    
T  33186251 aatttaactttcttttatcctttgctatagaaagagcttatgcataagcggttatcataataagcacctgtgctataag 33186173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 37842357 - 37842423
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    |||||||||||||| | |||||||||||||| ||||| |||  ||||||| | |||||| |||||||    
T  37842357 acatgttcataagcagttttcagcttatttttataagttcttcaagatagcttatgaaaacaactta 37842423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 38503470 - 38503516
Alignment:
Q  215 tgttcataagctggtttcagcttattttcataagctctctaagatag 261  Q
    |||||||||| || |||||||||||||||||||| |||| |||||||    
T  38503470 tgttcataagttgttttcagcttattttcataagttctccaagatag 38503516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 41195203 - 41195253
Alignment:
Q  220 ataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    |||||||  |||||||||||||||||||| |||| ||||||||| ||||||    
T  41195203 ataagcttttttcagcttattttcataagttctccaagatagtttatgaaa 41195253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 1565537 - 1565578
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctc 253  Q
    |||||| ||||||||| ||||||||||||||||| |||||||    
T  1565537 acatgtgcataagctgttttcagcttattttcatgagctctc 1565578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 4622161 - 4622112
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatag 261  Q
    |||||| ||||||||| ||| |||||||||||| |||||||| |||||||    
T  4622161 acatgtccataagctgtttttagcttattttcacaagctctccaagatag 4622112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 8016325 - 8016276
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatag 261  Q
    ||||||||||||  || ||||||||||||||| ||||||||| |||||||    
T  8016325 acatgttcataacttgttttcagcttattttcctaagctctccaagatag 8016276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 23902070 - 23902135
Alignment:
Q  213 catgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    ||||| |||||| || |||||||||| || ||||||||||||||||||| |  ||||| |||||||    
T  23902070 catgtgcataagttgttttcagcttacttccataagctctctaagatagcttttgaaaacaactta 23902135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 28689454 - 28689503
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatag 261  Q
    |||||| |||||| || |||||||||||||||||||||| || |||||||    
T  28689454 acatgtccataagttgttttcagcttattttcataagctttccaagatag 28689503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 45975753 - 45975700
Alignment:
Q  217 ttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    ||||||||||| |||||||||||||||||||  |||| ||||||| | ||||||    
T  45975753 ttcataagctgttttcagcttattttcataaattctccaagatagcttatgaaa 45975700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 13975698 - 13975634
Alignment:
Q  229 tttcagcttattttcataagctctctaagatagttcatgaaagcaacttaaacaaaaacaattta 293  Q
    |||||||||||||||| |||||||||| || || | |||||| || |||| | ||||||||||||    
T  13975698 tttcagcttattttcacaagctctctaggacagctaatgaaaacagcttatataaaaacaattta 13975634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 15799762 - 15799730
Alignment:
Q  219 cataagctggtttcagcttattttcataagctc 251  Q
    |||||||||||||||||||||| ||||||||||    
T  15799762 cataagctggtttcagcttattctcataagctc 15799730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 24552477 - 24552513
Alignment:
Q  330 cataagcgcttatcatcataatcacttatgctataag 366  Q
    |||||||||||||||| |||||||||| |||||||||    
T  24552477 cataagcgcttatcatgataatcacttgtgctataag 24552513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 28077073 - 28077129
Alignment:
Q  214 atgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    ||||||||||| || |||||||||||||  ||||||||||||| |||| | ||||||    
T  28077073 atgttcataagttgttttcagcttatttcaataagctctctaaaatagcttatgaaa 28077129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 31294530 - 31294574
Alignment:
Q  219 cataagctggtttcagcttattttcataagctctctaagatagtt 263  Q
    ||||||||  ||||| ||||||||||||||||||||| |||||||    
T  31294530 cataagctcttttcaacttattttcataagctctctatgatagtt 31294574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 35351105 - 35351041
Alignment:
Q  214 atgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    ||||| ||||| || ||||||||||||||  ||||||||||| ||||||| |||||  |||||||    
T  35351105 atgtttataagttgttttcagcttatttttgtaagctctctaggatagtttatgaagacaactta 35351041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 47498958 - 47499006
Alignment:
Q  318 aaatagcttatgcataagcgcttatcatcataatcacttatgctataag 366  Q
    ||||||||||| || ||||||||||||| |||| ||||| |||||||||    
T  47498958 aaatagcttatacacaagcgcttatcatgataagcacttgtgctataag 47499006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 212 - 366
Target Start/End: Original strand, 37353251 - 37353411
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaacttaaa-------caaaaacaatttaacttgctttta 304  Q
    |||| ||||||| ||| |||||| |||||||||||||||||| ||||||| | | |||| || |||| |       |||||||||||||||||  ||| |    
T  37353251 acatattcataaactgttttcagattattttcataagctctcaaagatagcttaagaaaacagcttatagcatacacaaaaacaatttaactttattt-a 37353349  T
Q  305 tcttctgtcaaagaaatagcttatgcataagcgcttatcatcataatcacttatgctataag 366  Q
    |||| ||| | |||||||| || | ||||||||||||||||||||| || ||||||||||||    
T  37353350 tcttttgttatagaaatagtttgtacataagcgcttatcatcataagcatttatgctataag 37353411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 216 - 343
Target Start/End: Complemental strand, 21653145 - 21653011
Alignment:
Q  216 gttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaa-------cttaaacaaaaacaatttaacttgcttttatctt 308  Q
    |||||||||||  ||||||||||||||||||||||||| ||||||| | ||||||||||       | || || ||| |||||||||||  |||||||||    
T  21653145 gttcataagctattttcagcttattttcataagctctccaagatagctaatgaaagcaatttgtagcctacacgaaatcaatttaactttattttatctt 21653046  T
Q  309 ctgtcaaagaaatagcttatgcataagcgcttatc 343  Q
     ||| | | ||||||| ||| ||||||||||||||    
T  21653045 ttgttacataaatagcctatacataagcgcttatc 21653011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 366
Target Start/End: Complemental strand, 10114479 - 10114397
Alignment:
Q  283 aaaacaatttaacttgcttttatcttctgtcaaagaaatagcttatgcataagcgcttatcatcataatcacttatgctataag 366  Q
    ||||||||| |||||  ||||||||| ||  | ||||||||||||| ||||||| ||||||||||||| |||||||||||||||    
T  10114479 aaaacaattcaactta-ttttatcttttgctatagaaatagcttatacataagcacttatcatcataaccacttatgctataag 10114397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 20672818 - 20672777
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctc 253  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  20672818 acatgttcataagctgttttcagcttattttcataagctctc 20672777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 317 - 380
Target Start/End: Original strand, 2833444 - 2833507
Alignment:
Q  317 gaaatagcttatgcataagcgcttatcatcataatcacttatgctataagtttcaaattaagca 380  Q
    |||||||||||| ||||||| |||||||| |||| ||||||||||||||| | |||| ||||||    
T  2833444 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagca 2833507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 42215084 - 42215142
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    ||||||||||||| || ||||||||||||| ||||||||||| ||||||| | ||||||    
T  42215084 acatgttcataagttgttttcagcttatttacataagctctccaagatagcttatgaaa 42215142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 2840315 - 2840266
Alignment:
Q  317 gaaatagcttatgcataagcgcttatcatcataatcacttatgctataag 366  Q
    |||||||||||| ||||||| |||||||| |||| |||||||||||||||    
T  2840315 gaaatagcttattcataagcacttatcatgataagcacttatgctataag 2840266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 2845002 - 2844953
Alignment:
Q  317 gaaatagcttatgcataagcgcttatcatcataatcacttatgctataag 366  Q
    |||||||||||| ||||||| |||||||| |||| |||||||||||||||    
T  2845002 gaaatagcttattcataagcacttatcatgataagcacttatgctataag 2844953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 27028894 - 27028841
Alignment:
Q  217 ttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    ||||||||||  ||||||||||||||||||||||||| ||||||| | ||||||    
T  27028894 ttcataagctattttcagcttattttcataagctctccaagatagcttatgaaa 27028841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 31862554 - 31862513
Alignment:
Q  219 cataagctggtttcagcttattttcataagctctctaagata 260  Q
    ||||||||| ||||||||||||||||||||||||||| ||||    
T  31862554 cataagctgttttcagcttattttcataagctctctaggata 31862513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 2458569 - 2458617
Alignment:
Q  213 catgttcataagctggtttcagcttattttcataagctctctaagatag 261  Q
    ||||||||||||||| |||||| |||||| ||||||||||||| |||||    
T  2458569 catgttcataagctgttttcagtttatttccataagctctctaggatag 2458617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 11494208 - 11494156
Alignment:
Q  218 tcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    |||||||||| ||||||||||||||||||||||||  ||||||| | ||||||    
T  11494208 tcataagctgctttcagcttattttcataagctcttcaagatagcttatgaaa 11494156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 350
Target Start/End: Complemental strand, 26215479 - 26215419
Alignment:
Q  290 tttaacttgcttttatcttctgtcaaagaaatagcttatgcataagcgcttatcatcataa 350  Q
    ||||||||  ||||||||| ||| | ||||||||||||| |||||||||||||||| ||||    
T  26215479 tttaactttattttatcttttgttatagaaatagcttatacataagcgcttatcattataa 26215419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 40859833 - 40859881
Alignment:
Q  318 aaatagcttatgcataagcgcttatcatcataatcacttatgctataag 366  Q
    ||||||||||| |||||||||||||||| |||| ||||| |||||||||    
T  40859833 aaatagcttatacataagcgcttatcatgataagcacttgtgctataag 40859881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 7714299 - 7714244
Alignment:
Q  223 agctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    ||||| ||||| ||||||||||| ||||||| ||||||| |||||||| |||||||    
T  7714299 agctgttttcaacttattttcatgagctctccaagatagctcatgaaaacaactta 7714244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 9956819 - 9956882
Alignment:
Q  215 tgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    ||||||||||  | |||||||||||||||||||| |||| ||||||| | |||||| |||||||    
T  9956819 tgttcataagtagttttcagcttattttcataagttctccaagatagattatgaaaacaactta 9956882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 30389167 - 30389124
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctcta 255  Q
    ||||||||||||| || |||||||||||||||||||| ||||||    
T  30389167 acatgttcataagttgttttcagcttattttcataagttctcta 30389124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 33714241 - 33714296
Alignment:
Q  215 tgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    ||||||||||||| |||||||||||||| ||||||||||  |||||| | ||||||    
T  33714241 tgttcataagctgttttcagcttatttttataagctctcccagatagcttatgaaa 33714296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 37444495 - 37444562
Alignment:
Q  283 aaaacaatttaacttgcttttatcttctgtcaaagaaatagcttatgcataagcgcttatcatcataa 350  Q
    |||||||||||||||   |||||||| ||| | || |||||||||| |||||||||||||||| ||||    
T  37444495 aaaacaatttaactttactttatcttttgttatagtaatagcttatacataagcgcttatcatgataa 37444562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 43413074 - 43413028
Alignment:
Q  213 catgttcataagctggtttcagcttattttcataagctctctaagata 260  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||||||||    
T  43413074 catgttcataatctg-tttcagcttatttccataagctctctaagata 43413028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 9700069 - 9700027
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctct 254  Q
    |||||| ||||||||| ||||| ||||||||||||||||||||    
T  9700069 acatgtccataagctgttttcaccttattttcataagctctct 9700027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 10075553 - 10075611
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    ||||||| | |||||| ||| ||||||||||||||||||||||| ||||| | ||||||    
T  10075553 acatgttgacaagctgcttttagcttattttcataagctctctaggatagcttatgaaa 10075611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 278
Target Start/End: Original strand, 26473762 - 26473820
Alignment:
Q  220 ataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    ||||||| |||| | ||||||||||||||||||||| ||||| | |||||| |||||||    
T  26473762 ataagctagttttaacttattttcataagctctctaggatagcttatgaaaacaactta 26473820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 28784798 - 28784855
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    |||||||||||||||  |||||||||||||| | |||||||||||||||| | ||||||    
T  28784798 acatgttcataagctt-tttcagcttatttttacaagctctctaagatagcttatgaaa 28784855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 34522153 - 34522195
Alignment:
Q  300 ttttatcttctgtcaaagaaatagcttatgcataagcgcttat 342  Q
    ||||||||| ||||| ||||||||||||| |||||||||||||    
T  34522153 ttttatcttgtgtcatagaaatagcttattcataagcgcttat 34522195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 42215311 - 42215349
Alignment:
Q  215 tgttcataagctggtttcagcttattttcataagctctc 253  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  42215311 tgttcataagctgttttcagcttatttacataagctctc 42215349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 11494033 - 11493984
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatag 261  Q
    ||||||||||||||||  ||||||||| |||||||||||||  |||||||    
T  11494033 acatgttcataagctgtgttcagcttactttcataagctcttcaagatag 11493984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 12851244 - 12851203
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctc 253  Q
    ||||||||||||| || |||| ||||||||||||||||||||    
T  12851244 acatgttcataagatgttttcggcttattttcataagctctc 12851203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 280 - 372
Target Start/End: Complemental strand, 7646199 - 7646107
Alignment:
Q  280 acaaaaacaatttaacttgcttttatcttctgtcaaagaaatagcttatgcataagcgcttatcatcataatcacttatgctataagtttcaa 372  Q
    ||||||||||||||||||  ||||| ||| | | | ||||||||||||| ||||| | ||||| |  | |||||||||||| ||||| |||||    
T  7646199 acaaaaacaatttaactttattttaccttttcttatagaaatagcttatacataaccacttattacgagaatcacttatgcaataagcttcaa 7646107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 8062587 - 8062543
Alignment:
Q  217 ttcataagctggtttcagcttattttcataagctctctaagatag 261  Q
    ||||||||||  || |||||||||||||||| |||||||||||||    
T  8062587 ttcataagctatttccagcttattttcataaactctctaagatag 8062543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 282 - 366
Target Start/End: Complemental strand, 14482193 - 14482110
Alignment:
Q  282 aaaaacaatttaacttgcttttatcttctgtcaaagaaatagcttatgcataagcgcttatcatcataatcacttatgctataag 366  Q
    ||||||||||| ||||  ||||||||| ||| | |||||||| |||| ||||||| ||||| || |||| |||| ||||||||||    
T  14482193 aaaaacaatttgactttattttatcttttgttatagaaatagtttatacataagcacttat-atgataagcactaatgctataag 14482110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 39866737 - 39866785
Alignment:
Q  213 catgttcataagctggtttcagcttattttcataagctctctaagatag 261  Q
    ||||| ||||||||| |||||| |||||||||||||||||  |||||||    
T  39866737 catgtccataagctgttttcagtttattttcataagctcttcaagatag 39866785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 41606905 - 41606953
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagata 260  Q
    ||||||||| ||| || ||||||||||||| ||||||||||||| ||||    
T  41606905 acatgttcaaaagttgttttcagcttatttccataagctctctaggata 41606953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 43052728 - 43052768
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctct 252  Q
    |||| |||||||| |||||| ||||||||||||||||||||    
T  43052728 acatcttcataagttggttttagcttattttcataagctct 43052768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 350
Target Start/End: Original strand, 32364750 - 32364871
Alignment:
Q  229 tttcagcttattttcataagctctctaagatagttcatgaaagcaacttaaacaaaaacaatttaacttgcttttatcttctgtcaaagaaatagcttat 328  Q
    |||||||||||||||||||| |||||||||||||| | | || || |||| || ||||||||||||  |  ||||||||   || | |||||||||||||    
T  32364750 tttcagcttattttcataagatctctaagatagtttacgtaaacagcttatacgaaaacaatttaatgttattttatctgaagttatagaaatagcttat 32364849  T
Q  329 gcataagcgcttatcatcataa 350  Q
     |||||| ||||||||| ||||    
T  32364850 acataagtgcttatcatgataa 32364871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 7964100 - 7964183
Alignment:
Q  98 gtgctattagatcttccaggactactctttttctcaacatatactcttctagtccttttttgggctgaaatttatcatcaggca 181  Q
    ||||| ||||||||||| || ||  | ||||||||||||||||| ||||| |||||||| ||||||||||| ||||| ||||||    
T  7964100 gtgctgttagatcttcctgggcttgtgtttttctcaacatatacacttcttgtccttttctgggctgaaatctatcaccaggca 7964183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 512 - 607
Target Start/End: Original strand, 7964336 - 7964431
Alignment:
Q  512 atgactgagcaggcaaggagtttaccaactaatatgctcaagataatttatatttcaataaatgctgccttgtatattatccaggtatctatctca 607  Q
    |||| ||||||||||||||||||||||||| ||| ||||| ||||||||| || ||  |||||| |||| | ||| | |||||||||||| |||||    
T  7964336 atgattgagcaggcaaggagtttaccaactgataagctcaggataatttacatctctgtaaatggtgccgtatatttaatccaggtatctgtctca 7964431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 9174880 - 9174825
Alignment:
Q  215 tgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    ||||||||||||  |||||||||||||||||||||||| |||||||| | ||||||    
T  9174880 tgttcataagctattttcagcttattttcataagctctgtaagatagcttatgaaa 9174825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 19333327 - 19333378
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagtt 263  Q
    |||||||||||||||| | ||||||||||||||||||||||| || ||||||    
T  19333327 acatgttcataagctgttctcagcttattttcataagctctccaatatagtt 19333378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 35379021 - 35379076
Alignment:
Q  215 tgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    |||||||||| || ||||||||||||||||||||||||| ||||||| | ||||||    
T  35379021 tgttcataagttgttttcagcttattttcataagctctccaagatagcttatgaaa 35379076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 33942218 - 33942152
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    |||||||||||||||| |||||||| |||||||| ||||||||| ||| | | |||||| |||||||    
T  33942218 acatgttcataagctgttttcagctaattttcattagctctctatgatggcttatgaaaacaactta 33942152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 345
Target Start/End: Original strand, 36114595 - 36114665
Alignment:
Q  275 cttaaacaaaaacaatttaacttgcttttatcttctgtcaaagaaatagcttatgcataagcgcttatcat 345  Q
    |||| ||||||||||||||||||  ||||||||| ||| | |||| ||| |||||||||||| ||||||||    
T  36114595 cttatacaaaaacaatttaactttattttatcttttgttatagaactaggttatgcataagcacttatcat 36114665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 42907429 - 42907388
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctc 253  Q
    |||||||||||||||| ||||||| |||||||||||||||||    
T  42907429 acatgttcataagctgctttcagcctattttcataagctctc 42907388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 12313176 - 12313224
Alignment:
Q  213 catgttcataagctggtttcagcttattttcataagctctctaagatag 261  Q
    |||||||||||| || ||||| ||||||||||||||||||| |||||||    
T  12313176 catgttcataagttgatttcaccttattttcataagctctccaagatag 12313224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 44443387 - 44443331
Alignment:
Q  214 atgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    ||||||||||| || |||||||||||||||||| |||||| ||||||| | ||||||    
T  44443387 atgttcataagttgttttcagcttattttcatatgctctcaaagatagcttatgaaa 44443331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 1647304 - 1647261
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctcta 255  Q
    ||||| |||||||||| ||||||||||||| |||||||||||||    
T  1647304 acatgctcataagctgttttcagcttatttccataagctctcta 1647261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 11344364 - 11344423
Alignment:
Q  283 aaaacaatttaacttgcttttatcttctgtcaaagaaatagcttatgcataagcgcttat 342  Q
    |||||||||| |||| |||||||||| ||| | ||||||| ||||||||||||| |||||    
T  11344364 aaaacaatttgactttcttttatcttttgttatagaaatatcttatgcataagcacttat 11344423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 5826285 - 5826219
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    |||||| ||||| ||| ||||||||||||| | ||||||||||| |||||||  ||||| |||||||    
T  5826285 acatgtgcataaactgttttcagcttatttacgtaagctctctatgatagtttttgaaaacaactta 5826219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 261
Target Start/End: Original strand, 7928304 - 7928350
Alignment:
Q  215 tgttcataagctggtttcagcttattttcataagctctctaagatag 261  Q
    |||||||||| || |||||||||||||||||||| |||| |||||||    
T  7928304 tgttcataagttgttttcagcttattttcataagttctccaagatag 7928350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 22681187 - 22681245
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    |||||||||||||||| ||| ||||||||| |||||| |||||| ||||| | ||||||    
T  22681187 acatgttcataagctgtttttagcttatttccataagttctctaggatagattatgaaa 22681245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 33319822 - 33319872
Alignment:
Q  220 ataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    |||||||  |||||||||||||||||||| |||| ||||||||| ||||||    
T  33319822 ataagcttttttcagcttattttcataagttctccaagatagtttatgaaa 33319872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 34652038 - 34652096
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    |||||| ||||||||| ||||| ||||||| ||||||||||| ||||||| | ||||||    
T  34652038 acatgtccataagctgttttcaacttatttccataagctctccaagatagcttatgaaa 34652096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 36114412 - 36114342
Alignment:
Q  280 acaaaaacaatttaacttgcttttatcttctgtcaaagaaatagcttatgcataagcgcttatcatcataa 350  Q
    ||||||||||||||||||  ||||||||| ||||| | |||||||| ||  |||||| |||||||| ||||    
T  36114412 acaaaaacaatttaactttattttatcttttgtcataaaaatagctaatatataagcacttatcatgataa 36114342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 366
Target Start/End: Complemental strand, 39567892 - 39567810
Alignment:
Q  284 aaacaatttaacttgcttttatcttctgtcaaagaaatagcttatgcataagcgcttatcatcataatcacttatgctataag 366  Q
    ||||||||||||||  ||||||||| ||| | ||||||| ||||| || ||| ||||||||| |||| | ||||||| |||||    
T  39567892 aaacaatttaactttattttatcttttgttatagaaatatcttatacacaagtgcttatcatgataagcgcttatgcaataag 39567810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 43511150 - 43511112
Alignment:
Q  215 tgttcataagctggtttcagcttattttcataagctctc 253  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  43511150 tgttcataagctgttttcagcttattttcataagttctc 43511112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 43529861 - 43529903
Alignment:
Q  213 catgttcataagctggtttcagcttattttcataagctctcta 255  Q
    ||||||||||||||  |||||| ||||||||||||||||||||    
T  43529861 catgttcataagctattttcagtttattttcataagctctcta 43529903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 5781737 - 5781688
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatag 261  Q
    |||||| ||||| ||| ||||||||||||| ||||||||||||| |||||    
T  5781737 acatgtgcataaactgttttcagcttatttccataagctctctatgatag 5781688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 9395195 - 9395158
Alignment:
Q  215 tgttcataagctggtttcagcttattttcataagctct 252  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  9395195 tgtttataagctgttttcagcttattttcataagctct 9395158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 10198482 - 10198531
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatag 261  Q
    |||||||||||||||| | ||||||||||| ||||| ||||||| |||||    
T  10198482 acatgttcataagctgttgtcagcttatttccataatctctctaggatag 10198531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 308
Target Start/End: Complemental strand, 16451183 - 16451090
Alignment:
Q  215 tgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaacttaaacaaaaacaatttaacttgcttttatctt 308  Q
    ||||||| ||||| ||||||||||||||||  || |||| ||||||| | | |||| || |||| |  |||||||||||||||  |||||||||    
T  16451183 tgttcatgagctgttttcagcttattttcacgagttctccaagatagcttacgaaaacagcttatatgaaaacaatttaacttcattttatctt 16451090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 16503413 - 16503372
Alignment:
Q  219 cataagctggtttcagcttattttcataagctctctaagata 260  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||    
T  16503413 cataagccggtttcagcttattttcataacctctccaagata 16503372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 41809247 - 41809296
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatag 261  Q
    ||||||||||||| || ||| ||||||||| |||||||| ||||||||||    
T  41809247 acatgttcataagttgtttttagcttatttccataagctttctaagatag 41809296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 43985022 - 43985071
Alignment:
Q  229 tttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    ||||||||||||||||||||||||  ||||||| | |||||| |||||||    
T  43985022 tttcagcttattttcataagctcttcaagatagcttatgaaaacaactta 43985071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 1625966 - 1625902
Alignment:
Q  214 atgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    ||||||||||| || |||||||| |||||| |||| |||| ||||||| | |||||| |||||||    
T  1625966 atgttcataagatgttttcagctgattttcgtaagttctccaagatagcttatgaaaacaactta 1625902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 5133840 - 5133792
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagata 260  Q
    ||||| |||||||||  ||||||||||||| |||||||||||| |||||    
T  5133840 acatggtcataagctactttcagcttatttccataagctctcttagata 5133792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 8820294 - 8820334
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctct 252  Q
    ||||||||| |||||| ||||||||||||| ||||||||||    
T  8820294 acatgttcacaagctgttttcagcttatttccataagctct 8820334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 41216710 - 41216770
Alignment:
Q  235 cttattttcataagctctctaagatagttcatgaaagcaacttaaacaaaaacaatttaac 295  Q
    |||||||| ||||||||||||| |||||| || ||| ||||||| | ||||| ||||||||    
T  41216710 cttattttgataagctctctaaaatagtttataaaatcaacttatataaaaataatttaac 41216770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 376
Target Start/End: Complemental strand, 264414 - 264268
Alignment:
Q  229 tttcagcttattttcataagctctctaagatagttcatgaaagcaacttaaacaaaaacaatttaacttgcttttatcttctgtcaaagaaatagcttat 328  Q
    |||||| ||||||||||||| |||| ||||||| | ||||||  | |||| || ||||| |||||||||  ||||||||| ||    |||||||||||||    
T  264414 tttcagtttattttcataagttctccaagatagct-atgaaaatagcttagacgaaaacgatttaactttattttatcttttgctttagaaatagcttat 264316  T
Q  329 gcataagcgcttatcatcataatcacttatgctataagtttcaaatta 376  Q
      |||||| |||||||| |||| ||||| ||||||||| | |||||||    
T  264315 atataagcacttatcatgataagcacttgtgctataagctgcaaatta 264268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 6647455 - 6647397
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    ||||||||||||| || ||||| ||||||||||||||||||||||||||| | ||||||    
T  6647455 acatgttcataagatgttttcaacttattttcataagctctctaagatagcttatgaaa 6647397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 4420711 - 4420662
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatag 261  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||    
T  4420711 acatgttcataagctgttttcagcttatttccataagctctccaagatag 4420662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 350
Target Start/End: Original strand, 9093561 - 9093703
Alignment:
Q  215 tgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaacttaaa-------caaaaacaatttaacttgcttttatct 307  Q
    |||| |||| ||| ||||||||||||||| |||| ||||||||| || | |||||| || |||| |       | |||||||||||||||  ||||||||    
T  9093561 tgttaataacctgttttcagcttattttcttaagttctctaagacagcttatgaaaacagcttatagcttatacgaaaacaatttaactttattttatct 9093660  T
Q  308 tctgtcaaagaaatagcttatgcataagcgcttatcatcataa 350  Q
    | ||  | ||||||||||||| |||||||||||||||| ||||    
T  9093661 tttgatatagaaatagcttatccataagcgcttatcatgataa 9093703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 3528871 - 3528813
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    |||||| |||||  || ||||| ||||||||||||||||||| ||||||||||||||||    
T  3528871 acatgtccataacttgttttcatcttattttcataagctctccaagatagttcatgaaa 3528813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 20368182 - 20368248
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    ||||||||||||||| |||||| |||||||||||||| |||| |||| || | |||||| |||||||    
T  20368182 acatgttcataagctagtttcaacttattttcataagttctccaagaaagcttatgaaaacaactta 20368248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 13908531 - 13908491
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctct 252  Q
    |||||||| ||||||| ||||||||||||||||||||||||    
T  13908531 acatgttcgtaagctgttttcagcttattttcataagctct 13908491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 28641751 - 28641791
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctct 252  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  28641751 acatgttcataagctgtttttagcttattttcataagctct 28641791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 328
Target Start/End: Original strand, 8349726 - 8349789
Alignment:
Q  265 atgaaagcaacttaaacaaaaacaatttaacttgcttttatcttctgtcaaagaaatagcttat 328  Q
    |||||||||||||| | ||||||||||||||||  ||||||||| ||| | |||||||| ||||    
T  8349726 atgaaagcaacttatataaaaacaatttaactttattttatcttttgttagagaaatagtttat 8349789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 255
Target Start/End: Complemental strand, 323631 - 323597
Alignment:
Q  221 taagctggtttcagcttattttcataagctctcta 255  Q
    ||||||| |||||||||||||||||||||||||||    
T  323631 taagctgttttcagcttattttcataagctctcta 323597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 246
Target Start/End: Complemental strand, 821867 - 821833
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcata 246  Q
    |||||||||||||||| ||||||||||||||||||    
T  821867 acatgttcataagctgttttcagcttattttcata 821833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 2112268 - 2112202
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    ||||||||||||| || |||| | ||||||  |||||| ||||||||||||| |||||| |||||||    
T  2112268 acatgttcataagttgttttcggtttatttctataagcactctaagatagtttatgaaaacaactta 2112202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 342
Target Start/End: Original strand, 32386108 - 32386238
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaacttaaacaaaaacaatttaacttgcttttatcttctg 311  Q
    |||||| |||||| || |||||||||| ||||||||||| || | ||||  | |||||| || |||| | ||||||| ||| ||||  ||||||||| |     
T  32386108 acatgtccataagttgttttcagcttactttcataagctttccaggataactaatgaaaacagcttatataaaaacagttttactttattttatcttttc 32386207  T
Q  312 tcaaagaaatagcttatgcataagcgcttat 342  Q
    | |  |||||||||||| ||||||| |||||    
T  32386208 taagtgaaatagcttatacataagcacttat 32386238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 1498032 - 1497991
Alignment:
Q  229 tttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||    
T  1498032 tttcaccttattttcataagctctccaagatagtttatgaaa 1497991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 31624158 - 31624109
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatag 261  Q
    |||||||||||||||| ||||| |||||||||||||  |||| |||||||    
T  31624158 acatgttcataagctgttttcaacttattttcataatttctccaagatag 31624109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 31812036 - 31812081
Alignment:
Q  233 agcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    ||||||||||||||||||||| ||||||| | |||||| |||||||    
T  31812036 agcttattttcataagctctccaagatagcttatgaaaacaactta 31812081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 364
Target Start/End: Original strand, 32206100 - 32206181
Alignment:
Q  283 aaaacaatttaacttgcttttatcttctgtcaaagaaatagcttatgcataagcgcttatcatcataatcacttatgctata 364  Q
    |||| ||||||||||  ||| ||||| ||||| ||| ||||||||  |||||| ||||||||| |||| | |||||||||||    
T  32206100 aaaataatttaactttatttcatcttttgtcatagagatagcttacacataagtgcttatcatgataagcgcttatgctata 32206181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 696670 - 696634
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataag 248  Q
    |||||||||||||||| |||||||||||| |||||||    
T  696670 acatgttcataagctgttttcagcttattctcataag 696634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 6537015 - 6536975
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctct 252  Q
    ||||||||||||| || ||||||||||||| ||||||||||    
T  6537015 acatgttcataagttgttttcagcttatttccataagctct 6536975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 9027646 - 9027606
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctct 252  Q
    |||||| |||||| || ||||||||||||||||||||||||    
T  9027646 acatgtccataagttgttttcagcttattttcataagctct 9027606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 9912196 - 9912244
Alignment:
Q  215 tgttcataagctggtttcagcttattttcataagctctctaagatagtt 263  Q
    ||||||||||||| ||| |||||||||||||||| |||| || ||||||    
T  9912196 tgttcataagctgttttgagcttattttcataagttctccaatatagtt 9912244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 35069507 - 35069459
Alignment:
Q  318 aaatagcttatgcataagcgcttatcatcataatcacttatgctataag 366  Q
    ||||||||||||||||||| |||||||| |||| | ||| |||||||||    
T  35069507 aaatagcttatgcataagcacttatcatgataaacgcttgtgctataag 35069459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 39907870 - 39907813
Alignment:
Q  213 catgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    ||||||||| ||||| ||||||||||||||||| || |||||||||||||| ||||||    
T  39907870 catgttcattagctgttttcagcttattttcattagttctctaagatagtttatgaaa 39907813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 2012633 - 2012676
Alignment:
Q  228 gtttcagcttattttcataagctctctaagatagttcatgaaag 271  Q
    |||||||||||||| ||||||||||||||||||||| |||||||    
T  2012633 gtttcagcttatttccataagctctctaagatagtttatgaaag 2012676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 366
Target Start/End: Original strand, 44777095 - 44777145
Alignment:
Q  316 agaaatagcttatgcataagcgcttatcatcataatcacttatgctataag 366  Q
    |||||||| ||||||||||| ||||||||| |||| |||||||||||||||    
T  44777095 agaaatagtttatgcataagtgcttatcatgataaacacttatgctataag 44777145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 15075088 - 15075145
Alignment:
Q  213 catgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    ||||| ||||||||| ||| ||||||||| ||||||||||||||| ||||| ||||||    
T  15075088 catgtacataagctgtttttagcttatttccataagctctctaaggtagtttatgaaa 15075145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 20881655 - 20881704
Alignment:
Q  229 tttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    |||||||||||||||||||| ||| |||||||||| |||||| |||||||    
T  20881655 tttcagcttattttcataagttctttaagatagtttatgaaaacaactta 20881704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 278
Target Start/End: Complemental strand, 39967985 - 39967922
Alignment:
Q  215 tgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    ||||||||||||| ||||| ||||||||||| || ||||| |||||| | |||||| |||||||    
T  39967985 tgttcataagctgttttcaacttattttcattagttctctcagatagcttatgaaaacaactta 39967922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 48917368 - 48917415
Alignment:
Q  232 cagcttattttcataagctctctaagatagttcatgaaagcaacttaa 279  Q
    |||||||||||||||||||||| ||||||| | |||||| ||||||||    
T  48917368 cagcttattttcataagctctccaagatagcttatgaaaacaacttaa 48917415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 529439 - 529385
Alignment:
Q  216 gttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    |||||||||||| ||||| | ||||||||||||||||| ||||||| | ||||||    
T  529439 gttcataagctgttttcaacatattttcataagctctccaagatagcttatgaaa 529385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 270
Target Start/End: Original strand, 6552294 - 6552352
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    |||| ||||||||||| ||||||||||||||||||| ||||  | ||||||| ||||||    
T  6552294 acatattcataagctgttttcagcttattttcataaactctgcatgatagtttatgaaa 6552352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 7244748 - 7244690
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    ||||| ||||||| || ||||||||||||||||||||||||| || |||| | ||||||    
T  7244748 acatgctcataagttgttttcagcttattttcataagctctccaatatagcttatgaaa 7244690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 22283754 - 22283804
Alignment:
Q  220 ataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    |||||||| ||||||||||||| |||||| |||||||||| ||| ||||||    
T  22283754 ataagctgttttcagcttatttccataagttctctaagatggtttatgaaa 22283804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 35007666 - 35007617
Alignment:
Q  211 tacatgttcataagctggtttcagcttattttcataagctctctaagatag 261  Q
    |||||||||||||| || |||||||||||||||| |||||||| |||||||    
T  35007666 tacatgttcataagttgttttcagcttattttca-aagctctcaaagatag 35007617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 38010782 - 38010724
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    |||||||||||||||| ||| ||||||||| |||||| |||||| ||||| | ||||||    
T  38010782 acatgttcataagctgtttttagcttatttccataagttctctaggatagattatgaaa 38010724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 44151482 - 44151548
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactta 278  Q
    |||||| |||||| || ||||||||||||| |||||||| |  ||||||||| |||||| |||||||    
T  44151482 acatgtccataagatgttttcagcttatttccataagcttttcaagatagtttatgaaaacaactta 44151548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 334
Target Start/End: Original strand, 28613604 - 28613665
Alignment:
Q  273 aacttaaacaaaaacaatttaacttgcttttatcttctgtcaaagaaatagcttatgcataa 334  Q
    |||||| ||||||||||||||||||  ||||||||| ||| | | ||||||||||| |||||    
T  28613604 aacttatacaaaaacaatttaactttgttttatcttttgttataaaaatagcttatacataa 28613665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 11048095 - 11048059
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataag 248  Q
    |||||||||||||||| |||||||||||| |||||||    
T  11048095 acatgttcataagctgttttcagcttattctcataag 11048059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 21568757 - 21568801
Alignment:
Q  322 agcttatgcataagcgcttatcatcataatcacttatgctataag 366  Q
    ||||||| |||||| ||||||||| |||| |||||||||||||||    
T  21568757 agcttatacataagtgcttatcatgataagcacttatgctataag 21568801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 27378836 - 27378888
Alignment:
Q  218 tcataagctggtttcagcttattttcataagctctctaagatagttcatgaaa 270  Q
    ||||||| || |||||| |||||||||||||||||| | ||||||| ||||||    
T  27378836 tcataagttgttttcagtttattttcataagctctccaggatagtttatgaaa 27378888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 43219646 - 43219682
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataag 248  Q
    |||||||||||||||| |||||||||||| |||||||    
T  43219646 acatgttcataagctgttttcagcttattctcataag 43219682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 306387 - 306329
Alignment:
Q  219 cataagctggtttcagcttattttcataagctctctaagatagttcatgaaagcaactt 277  Q
    ||||||||| |||||||||| || ||||||||||||| ||||| | |||||| ||||||    
T  306387 cataagctgttttcagcttacttacataagctctctaggatagcttatgaaaacaactt 306329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 27069 - 27020
Alignment:
Q  212 acatgttcataagctggtttcagcttattttcataagctctctaagatag 261  Q
    |||||| ||||| ||| ||||||||||||| ||||||||||||| |||||    
T  27069 acatgtgcataaactgttttcagcttatttccataagctctctatgatag 27020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 345
Target Start/End: Original strand, 21311 - 21420
Alignment:
Q  236 ttattttcataagctctctaagatagttcatgaaagcaacttaaacaaaaacaatttaacttgcttttatcttctgtcaaagaaatagcttatgcataag 335  Q
    ||||||||||||  |||| || |||| | |||||| || |||| || |||||||||||||||  ||||||||| |   | | ||||||||||| ||||||    
T  21311 ttattttcataatttctccaatatagcttatgaaaacagcttatacgaaaacaatttaactttattttatcttttcctataaaaatagcttatacataag 21410  T
Q  336 cgcttatcat 345  Q
     |||||||||    
T  21411 tgcttatcat 21420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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