View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5015-Insertion-8 (Length: 496)
Name: NF5015-Insertion-8
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015-Insertion-8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 496
Target Start/End: Original strand, 36364833 - 36365308
Alignment:
| Q |
8 |
gtttgttcccttgagtccatcaaaaacagggatacaagtgtacgtggatgaagaaaagctcatgtttgaaaggaagcataaccaattgaattggatgact |
107 |
Q |
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| T |
36364833 |
gtttgttcccttgagtccatcaaaaacagtgatacaagtgtacgtggatgaagaaaagctcatgtttgaaaggaagcataaccaattgaattgaatgact |
36364932 |
T |
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| Q |
108 |
cctacttgagaagccggttattgcggcaaagatgaggtgggttagaagtcccacatagtttaaaaattcttaaatctaatgtcttaatcttttggattaa |
207 |
Q |
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| T |
36364933 |
cctacttgagaagccggttattgcggcaaatatgaggtgggttagaaatcccacatagtttaaaaattcttaaatctaatatcttaatcttttgaattaa |
36365032 |
T |
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| Q |
208 |
tattttggattaagatgtggtgttcagttcannnnnnnatgtgattcttgatccaatatcccttcatgatccaacaatgatgtaaaagtttggttcgaca |
307 |
Q |
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| T |
36365033 |
-------------gatgtggtgttcaattcatttctttatgttattcttgatccaatatcctttcatgatccaataatgatgtaaaagtttggttcgaca |
36365119 |
T |
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| Q |
308 |
taaggttaaactaatcattatgtcgaaagtcttccttacaatatggtcaagtgatgtatagcgggtgtcaacaatagtggaagtatttttagatgaaaaa |
407 |
Q |
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| T |
36365120 |
taaggttaaactaatcattatgtcgaaagtctttcttaaaatatggtcaagtgatgtatagcgggtgtcaacaatagtggaagtatttttagatgaaaaa |
36365219 |
T |
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| Q |
408 |
actttcgttttaagttaaatgtgatgttcaactcacttgtatgattttcttaatctaatgcagatgatcccccatacctcccttatgac |
496 |
Q |
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| T |
36365220 |
gctttcgttttaagttaaatgtgatgttcaactcacttgtatgattttcttaatctaatgcagatgatccccgatacctcccttatgac |
36365308 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 447
Target Start/End: Original strand, 41444462 - 41444495
Alignment:
| Q |
414 |
gttttaagttaaatgtgatgttcaactcacttgt |
447 |
Q |
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| T |
41444462 |
gttttaagttaaatgtgatgttcaactcacttgt |
41444495 |
T |
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