View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5015_high_16 (Length: 392)
Name: NF5015_high_16
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 30 - 378
Target Start/End: Original strand, 26537036 - 26537384
Alignment:
| Q |
30 |
tcgaaccttctttcgagcttcattttttaatatctcgtcatctttcnnnnnnncagcaagatcctcatcttcagcagcctcagcagctgctgcaatagca |
129 |
Q |
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| T |
26537036 |
tcgaaccttctttcgagcttcattttttaatatctcgtcatctttcaaaaaaacagcaagatcctcatcttcagcagcctcagcagctgctgcaatagca |
26537135 |
T |
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| Q |
130 |
tttttggtactatggagatattcagctttgaagtatttgttccagaaatctacctcgctcatcttactcggtacaaaattgaggaatgcctggtgaattg |
229 |
Q |
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| T |
26537136 |
tttttggtactatggagatattcagctttgaagtatttgttccagaaatctacctcgctcatgttactcggtacaaaattgaggaatgcctggtgaattg |
26537235 |
T |
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| Q |
230 |
ctggtttgagagcaaaaatctgatattttatttctcgagtcaattgaaatttaactatatttatccgaccgtcactagtagtaggctttgtgtcgaagat |
329 |
Q |
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| T |
26537236 |
ctggtttgagagcaaaaatctgatattttatttctcgagtcaattgaaatttaactatatttatccgaccgtcactagtagtaggctttgtgtcgaagat |
26537335 |
T |
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| Q |
330 |
caaacaatttttaaatccaatcctttgttttaactttcggctttcatct |
378 |
Q |
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| T |
26537336 |
caaacaatttttaaatccaatcctttgtgttaactttcggctttcatct |
26537384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 34 - 193
Target Start/End: Original strand, 40350892 - 40351051
Alignment:
| Q |
34 |
accttctttcgagcttcattttttaatatctcgtcatctttcnnnnnnncagcaagatcctcatcttcagcagcctcagcagctgctgcaatagcatttt |
133 |
Q |
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| T |
40350892 |
accttctttcgagcttcattttctaatatctcgtcatctttcaaaaaaacagcaagatcttcatcttcagcagcctcggcagctgctgcaatagcatttt |
40350991 |
T |
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| Q |
134 |
tggtactatggagatattcagctttgaagtatttgttccagaaatctacctcgctcatct |
193 |
Q |
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| T |
40350992 |
tggtactatggagatattcagctttaaagtatttgttccagaaatctacctcgctcatct |
40351051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 308 - 378
Target Start/End: Original strand, 40355494 - 40355564
Alignment:
| Q |
308 |
tagtaggctttgtgtcgaagatcaaacaatttttaaatccaatcctttgttttaactttcggctttcatct |
378 |
Q |
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| T |
40355494 |
tagtaggctttgtgtcgaagatcaaagaatttttaaatccaatcctttgttttaactttcggctttcatct |
40355564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 40351165 - 40351224
Alignment:
| Q |
192 |
cttactcggtacaaaattgaggaatgcctggtgaattgctggtttgagagcaaaaatctg |
251 |
Q |
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| T |
40351165 |
cttactgggtacaaaattgaggaatgcctggtgaactgctggtttgagggcaaaaatctg |
40351224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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