View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5015_high_17 (Length: 392)
Name: NF5015_high_17
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 11295401 - 11295806
Alignment:
| Q |
1 |
ttgtcagttgttcaaattaaggaacaataaaaataaacccttctcctagctaacaaacaattacaattaaaacactgacataaggttgttgtgaaccatg |
100 |
Q |
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| T |
11295401 |
ttgtcagttgttcaaattaaggaacaataaaaataaacccttctcctagctaacaaacaattacaattaaaacactgacataaggttgttgtgaaccatg |
11295500 |
T |
|
| Q |
101 |
caattgcaagcatgctacaatgtagtaagcatttctaagactttcacccttcggtgacataagagaattgtaaaaggtccataaaaatatttgaattcta |
200 |
Q |
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| T |
11295501 |
caattgcaagcatgctacaatgtagtaagcatttctaagactttcacccttcagtgacataagagaattgtcaaaggtccataaaaatatttgaattcta |
11295600 |
T |
|
| Q |
201 |
aaa-tttttgttaatagtccttgaacatatataactttgtttttggtccttgatgttttgttttagaagtccttgcaaaatttgttc------------- |
286 |
Q |
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| T |
11295601 |
aaattttttgtttttagtccttgaacatatataactttgtttttggtccttgatgttttgttttagaagtccttgcaaaatttgttcatattgaaattcg |
11295700 |
T |
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| Q |
287 |
-----ataatatttattttagacttattctaagagacnnnnnnntcaaatcaaatagtctacacatataccagtatttcctcaagaaatcattaattcat |
381 |
Q |
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| T |
11295701 |
tctctataatatttattttagacttattctaagagacaaaaaaatcaaatcaaatagtctacacatataccagtatttcctcaagaaatcattaattcat |
11295800 |
T |
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| Q |
382 |
ctcact |
387 |
Q |
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| T |
11295801 |
ttcact |
11295806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 14186671 - 14186637
Alignment:
| Q |
12 |
tcaaattaaggaacaataaaaataaacccttctcc |
46 |
Q |
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| T |
14186671 |
tcaaattaaggaacaataaaaataaacccttctcc |
14186637 |
T |
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