View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5015_high_2 (Length: 608)

Name: NF5015_high_2
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5015_high_2
NF5015_high_2
[»] chr4 (13 HSPs)
chr4 (19-427)||(43172773-43173183)
chr4 (429-587)||(43173215-43173373)
chr4 (267-377)||(43178897-43179005)
chr4 (504-570)||(52936641-52936707)
chr4 (509-570)||(23160040-23160101)
chr4 (527-572)||(3047201-3047246)
chr4 (531-572)||(7490359-7490400)
chr4 (503-576)||(29731373-29731446)
chr4 (527-576)||(37970192-37970241)
chr4 (511-572)||(39606569-39606629)
chr4 (527-572)||(54500567-54500612)
chr4 (508-572)||(32006498-32006562)
chr4 (508-544)||(46434759-46434795)
[»] chr8 (9 HSPs)
chr8 (511-576)||(3650514-3650579)
chr8 (511-572)||(11754251-11754312)
chr8 (512-560)||(1230664-1230712)
chr8 (508-572)||(10152454-10152518)
chr8 (527-575)||(36588112-36588160)
chr8 (504-572)||(42700503-42700571)
chr8 (500-555)||(12959304-12959359)
chr8 (512-555)||(42932231-42932274)
chr8 (503-544)||(13284259-13284300)
[»] chr2 (5 HSPs)
chr2 (511-575)||(22608522-22608586)
chr2 (503-572)||(41939102-41939171)
chr2 (508-563)||(690795-690850)
chr2 (530-582)||(7206113-7206165)
chr2 (503-539)||(42451464-42451500)
[»] chr1 (8 HSPs)
chr1 (511-559)||(4806797-4806845)
chr1 (511-554)||(7996691-7996734)
chr1 (527-578)||(36371058-36371109)
chr1 (511-569)||(43284032-43284090)
chr1 (527-572)||(3528487-3528532)
chr1 (519-572)||(3573334-3573387)
chr1 (507-576)||(5270738-5270807)
chr1 (531-576)||(15973027-15973072)
[»] chr7 (7 HSPs)
chr7 (503-570)||(23221392-23221459)
chr7 (512-572)||(48289028-48289087)
chr7 (511-544)||(27279405-27279438)
chr7 (503-576)||(28200379-28200452)
chr7 (503-560)||(32563118-32563174)
chr7 (511-571)||(25251509-25251569)
chr7 (511-563)||(27158889-27158941)
[»] chr6 (8 HSPs)
chr6 (510-563)||(29457188-29457241)
chr6 (509-572)||(2105903-2105966)
chr6 (507-544)||(6503286-6503323)
chr6 (503-540)||(7338836-7338873)
chr6 (511-576)||(29069477-29069542)
chr6 (508-572)||(4826288-4826352)
chr6 (516-576)||(6003388-6003448)
chr6 (508-572)||(34701145-34701209)
[»] chr5 (5 HSPs)
chr5 (512-572)||(19248477-19248537)
chr5 (519-569)||(29962359-29962409)
chr5 (519-569)||(30012389-30012439)
chr5 (510-572)||(37614428-37614490)
chr5 (508-570)||(37791162-37791224)
[»] chr3 (9 HSPs)
chr3 (516-580)||(42102041-42102105)
chr3 (520-570)||(6901465-6901515)
chr3 (530-572)||(33223866-33223908)
chr3 (522-563)||(25289326-25289367)
chr3 (515-572)||(48376833-48376890)
chr3 (511-571)||(2563928-2563988)
chr3 (512-560)||(29791786-29791834)
chr3 (511-559)||(31463495-31463543)
chr3 (503-563)||(53852742-53852802)
[»] scaffold0045 (2 HSPs)
scaffold0045 (511-578)||(63854-63921)
scaffold0045 (511-578)||(71186-71253)


Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Original strand, 43172773 - 43173183
Alignment:
Q  19 ggctgtagctcttaaatctaactctcagtccaatatgattaatgtttcaatggactaagctgcaagtacttttgcaccgtctaatccttctgatcggatg 118  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  43172773 ggctgtagctcttaactctaactctcagtccaatatgattaatgtttcaatggactaagctgcaagcagttttgcaccgtctaatccttctgatcggatg 43172872  T
Q  119 gattagtttttgtgcgcattgatgaatttgttatcgttcgcaat---gtgtcgttccatttttatataaataaaaattgaacgttacaaattacgagcat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| || || |||||||| |||||| ||||||||||| |||    
T  43172873 gattagtttttgtgcgcattgatgaatttgttatcgttcgcaattttgtgtcgttccattttaat-tatataaaaatggaacgtaacaaattacgaccat 43172971  T
Q  216 tgacaaattcatcttaaaaataatgtaataatattcacttttacatgctataatttgcccacattttgtatgttttgcaaaaggtggtgtgagaataaaa 315  Q
    |||||||| ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43172972 tgacaaatccatcttaaaaataatgtaataattttcacttttatatgctattatttgcccacattttgtatgttttgcaaaaggtggtgtgagaataaaa 43173071  T
Q  316 atatacatgtgacatgtccgtataaattgtgcatatggattaagtaattttacaacaaaaaataatctaaaacaagaagttttaagatactgtagtcaaa 415  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43173072 atatacatgtggcatgtccgtataaattgtgcatatggattaattaattttacaacaaaaaataatctaaaacaagaagttttaagatattgtagtcaaa 43173171  T
Q  416 tttaatgtcttt 427  Q
    ||||||||||||    
T  43173172 tttaatgtcttt 43173183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 429 - 587
Target Start/End: Original strand, 43173215 - 43173373
Alignment:
Q  429 tgaatttttcattgaggtatagtagaatactaaatcaagcttgccaattactataattcaatcttcgcttttgatggttggagtttgaacctcaaacatt 528  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  43173215 tgaatttttcattgaggtatagtagaatactgaatcaagcttgtcaattactataattcaatcttcgcttttgatggttggagtttgaaccctaaacatt 43173314  T
Q  529 acatatattatacattttttctaccaactgagctacgctcacgatgaccaatgtgtatg 587  Q
    |||||||||||| |||||||||||||| ||||||| | ||||||||||||| |||||||    
T  43173315 acatatattatatattttttctaccaattgagctaagttcacgatgaccaaggtgtatg 43173373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 267 - 377
Target Start/End: Original strand, 43178897 - 43179005
Alignment:
Q  267 aatttgcccacattttgtatgttttgcaaaaggtggtgtgagaataaaaatatacatgtgacatgtccgtataaattgtgcata---tggattaagtaat 363  Q
    |||||||||||||||||| | |||||||||||||||||||||||| |||||||||     || ||||| |||||||||||||||   | |||||||||||    
T  43178897 aatttgcccacattttgtgtattttgcaaaaggtggtgtgagaatcaaaatatac-----acgtgtccatataaattgtgcatatattagattaagtaat 43178991  T
Q  364 tttacaacaaaaaa 377  Q
    ||||||| ||||||    
T  43178992 tttacaaaaaaaaa 43179005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 504 - 570
Target Start/End: Complemental strand, 52936707 - 52936641
Alignment:
Q  504 ggttggagtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcac 570  Q
    |||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||| || ||||||    
T  52936707 ggtttgagtttgaacctcaaaccttacatatattatacattgtttctatcaactgagttaagctcac 52936641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 509 - 570
Target Start/End: Complemental strand, 23160101 - 23160040
Alignment:
Q  509 gagtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcac 570  Q
    |||||||||||||  || ||||||||||||| |||| |  ||||||||||||||||||||||    
T  23160101 gagtttgaacctcggaccttacatatattatgcattgtccctaccaactgagctacgctcac 23160040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 572
Target Start/End: Complemental strand, 3047246 - 3047201
Alignment:
Q  527 ttacatatattatacattttttctaccaactgagctacgctcacga 572  Q
    ||||||||||||||| || || ||||||||||||||| ||||||||    
T  3047246 ttacatatattatacgttgttcctaccaactgagctaagctcacga 3047201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 531 - 572
Target Start/End: Original strand, 7490359 - 7490400
Alignment:
Q  531 atatattatacattttttctaccaactgagctacgctcacga 572  Q
    |||||||||||||||| ||||||||||||| || ||||||||    
T  7490359 atatattatacattttctctaccaactgagttaagctcacga 7490400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 576
Target Start/End: Original strand, 29731373 - 29731446
Alignment:
Q  503 tggttggagtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcacgatgac 576  Q
    |||||||| |||||||| |||||||||||||| |||| ||||    | |||||||||||||  |||||||||||    
T  29731373 tggttggaatttgaaccccaaacattacatattttatgcattgccccaaccaactgagctaaactcacgatgac 29731446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 576
Target Start/End: Original strand, 37970192 - 37970241
Alignment:
Q  527 ttacatatattatacattttttctaccaactgagctacgctcacgatgac 576  Q
    |||||||||||||||||||||| ||||||||||  || | ||||||||||    
T  37970192 ttacatatattatacattttttataccaactgaattaagttcacgatgac 37970241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 572
Target Start/End: Original strand, 39606569 - 39606629
Alignment:
Q  511 gtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcacga 572  Q
    ||||||||||| ||| |||||||| ||||||| || ||| ||||||||||||| ||||||||    
T  39606569 gtttgaacctcgaactttacatattttataca-ttgttcaaccaactgagctaagctcacga 39606629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 572
Target Start/End: Complemental strand, 54500612 - 54500567
Alignment:
Q  527 ttacatatattatacattttttctaccaactgagctacgctcacga 572  Q
    ||||||||||||| |||| | |||||||||||||||| ||||||||    
T  54500612 ttacatatattatgcattgtctctaccaactgagctaagctcacga 54500567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 572
Target Start/End: Complemental strand, 32006562 - 32006498
Alignment:
Q  508 ggagtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcacga 572  Q
    |||||||||||| | ||| ||||||||||||| |||| |  |||||||||||||||  |||||||    
T  32006562 ggagtttgaaccccgaactttacatatattatgcattatccctaccaactgagctaaactcacga 32006498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 544
Target Start/End: Original strand, 46434759 - 46434795
Alignment:
Q  508 ggagtttgaacctcaaacattacatatattatacatt 544  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  46434759 ggagtttgaacctcaaaccttacatatattatgcatt 46434795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 511 - 576
Target Start/End: Complemental strand, 3650579 - 3650514
Alignment:
Q  511 gtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcacgatgac 576  Q
    ||||||||| | ||| ||||||||||||| |||||||||||||||||||| || ||||||||||||    
T  3650579 gtttgaaccccgaaccttacatatattatgcattttttctaccaactgagttaagctcacgatgac 3650514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 511 - 572
Target Start/End: Complemental strand, 11754312 - 11754251
Alignment:
Q  511 gtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcacga 572  Q
    |||||||||  |||| |||||||||||||||||| ||||||| |||||||||| | ||||||    
T  11754312 gtttgaacccgaaactttacatatattatacattgtttctactaactgagctaagatcacga 11754251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 512 - 560
Target Start/End: Original strand, 1230664 - 1230712
Alignment:
Q  512 tttgaacctcaaacattacatatattatacattttttctaccaactgag 560  Q
    |||||||||||||| ||||||||||||| |||| || ||||||||||||    
T  1230664 tttgaacctcaaaccttacatatattatgcattgttcctaccaactgag 1230712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 508 - 572
Target Start/End: Complemental strand, 10152518 - 10152454
Alignment:
Q  508 ggagtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcacga 572  Q
    |||||| ||||||||||| || ||||| ||||||||| | | |||||||||||||| ||||||||    
T  10152518 ggagttcgaacctcaaaccttgcatattttatacattgtctataccaactgagctaagctcacga 10152454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 527 - 575
Target Start/End: Original strand, 36588112 - 36588160
Alignment:
Q  527 ttacatatattatacattttttctaccaactgagctacgctcacgatga 575  Q
    |||||||||||||||||| || ||||||||||||||| | |||||||||    
T  36588112 ttacatatattatacattgttcctaccaactgagctaagttcacgatga 36588160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 504 - 572
Target Start/End: Complemental strand, 42700571 - 42700503
Alignment:
Q  504 ggttggagtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcacga 572  Q
    ||||||||||||||||||| || || |||||||||| |||| | ||||||||| ||| || ||||||||    
T  42700571 ggttggagtttgaacctcataccttgcatatattatgcattgtctctaccaaccgagttaagctcacga 42700503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 555
Target Start/End: Complemental strand, 12959359 - 12959304
Alignment:
Q  500 tgatggttggagtttgaacctcaaacattacatatattatacattttttctaccaa 555  Q
    ||||| ||||||||| ||| |||||| ||||||||||||| |||| ||||||||||    
T  12959359 tgatgtttggagtttaaacttcaaaccttacatatattatgcattgtttctaccaa 12959304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 555
Target Start/End: Original strand, 42932231 - 42932274
Alignment:
Q  512 tttgaacctcaaacattacatatattatacattttttctaccaa 555  Q
    |||||||||||||| |||||||||||||||||| ||| ||||||    
T  42932231 tttgaacctcaaaccttacatatattatacattgtttataccaa 42932274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 544
Target Start/End: Original strand, 13284259 - 13284300
Alignment:
Q  503 tggttggagtttgaacctcaaacattacatatattatacatt 544  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||    
T  13284259 tggttggggtttgaacctcaaaccttatatatattatacatt 13284300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 511 - 575
Target Start/End: Complemental strand, 22608586 - 22608522
Alignment:
Q  511 gtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcacgatga 575  Q
    |||||||||||| || || |||||||||| |||| | |||||||||||||||| |||||||||||    
T  22608586 gtttgaacctcataccttgcatatattatgcattgtctctaccaactgagctaagctcacgatga 22608522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 503 - 572
Target Start/End: Original strand, 41939102 - 41939171
Alignment:
Q  503 tggttggagtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcacga 572  Q
    |||| |||||||||| ||||||| ||||||||||||| |||| |  ||||||||| ||||| ||||||||    
T  41939102 tggtcggagtttgaatctcaaaccttacatatattatgcattatccctaccaactaagctaagctcacga 41939171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 563
Target Start/End: Complemental strand, 690850 - 690795
Alignment:
Q  508 ggagtttgaacctcaaacattacatatattatacattttttctaccaactgagcta 563  Q
    ||||||||||||||| || || ||||||||||||||| | ||| ||||||||||||    
T  690850 ggagtttgaacctcagacgttgcatatattatacattgtctcttccaactgagcta 690795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 530 - 582
Target Start/End: Complemental strand, 7206165 - 7206113
Alignment:
Q  530 catatattatacattttttctaccaactgagctacgctcacgatgaccaatgt 582  Q
    |||||||||| |||| | |||||||||||||||| |||||||| ||| |||||    
T  7206165 catatattatgcattgtctctaccaactgagctaagctcacgaggacaaatgt 7206113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 503 - 539
Target Start/End: Complemental strand, 42451500 - 42451464
Alignment:
Q  503 tggttggagtttgaacctcaaacattacatatattat 539  Q
    |||| |||||||||||||||||| |||||||||||||    
T  42451500 tggtcggagtttgaacctcaaaccttacatatattat 42451464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 511 - 559
Target Start/End: Original strand, 4806797 - 4806845
Alignment:
Q  511 gtttgaacctcaaacattacatatattatacattttttctaccaactga 559  Q
    ||||||||||||||| |||||||||||||||||| | ||||||||||||    
T  4806797 gtttgaacctcaaaccttacatatattatacattgtctctaccaactga 4806845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 554
Target Start/End: Original strand, 7996691 - 7996734
Alignment:
Q  511 gtttgaacctcaaacattacatatattatacattttttctacca 554  Q
    ||||||||||||||| ||||||||||||| |||| |||||||||    
T  7996691 gtttgaacctcaaactttacatatattatgcattgtttctacca 7996734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 578
Target Start/End: Original strand, 36371058 - 36371109
Alignment:
Q  527 ttacatatattatacattttttctaccaactgagctacgctcacgatgacca 578  Q
    ||||||||||||| |||| | |||||||||||||||| |||||||| |||||    
T  36371058 ttacatatattatgcattgtctctaccaactgagctaagctcacgaggacca 36371109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 569
Target Start/End: Original strand, 43284032 - 43284090
Alignment:
Q  511 gtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctca 569  Q
    ||||||||| ||||| |||||||||||||||||| | ||||| ||||||| || |||||    
T  43284032 gtttgaaccacaaaccttacatatattatacattgtctctactaactgagttaagctca 43284090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 572
Target Start/End: Original strand, 3528487 - 3528532
Alignment:
Q  527 ttacatatattatacattttttctaccaactgagctacgctcacga 572  Q
    |||||||||||||||||| |||||| |||||||||||  |||||||    
T  3528487 ttacatatattatacattgtttctatcaactgagctaaactcacga 3528532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 572
Target Start/End: Original strand, 3573334 - 3573387
Alignment:
Q  519 ctcaaacattacatatattatacattttttctaccaactgagctacgctcacga 572  Q
    ||||||| ||||||||||||| |||| || |||||||||||| || ||||||||    
T  3573334 ctcaaaccttacatatattatgcattgttcctaccaactgagttaagctcacga 3573387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 576
Target Start/End: Original strand, 5270738 - 5270807
Alignment:
Q  507 tggagtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcacgatgac 576  Q
    ||||||||||||  ||||| || |||||||||| |||| | ||||| ||||||| || ||||||||||||    
T  5270738 tggagtttgaactccaaactttgcatatattatgcattatctctactaactgagttaagctcacgatgac 5270807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 531 - 576
Target Start/End: Complemental strand, 15973072 - 15973027
Alignment:
Q  531 atatattatacattttttctaccaactgagctacgctcacgatgac 576  Q
    |||||||||||||| ||| ||||||||||||||  |||||||||||    
T  15973072 atatattatacattatttttaccaactgagctaacctcacgatgac 15973027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 503 - 570
Target Start/End: Complemental strand, 23221459 - 23221392
Alignment:
Q  503 tggttggagtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcac 570  Q
    ||||||||||||||||| | ||| ||||||||||||| |||| | ||||||||||||| || ||||||    
T  23221459 tggttggagtttgaaccacgaaccttacatatattatgcattgtctctaccaactgagttaagctcac 23221392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 512 - 572
Target Start/End: Complemental strand, 48289087 - 48289028
Alignment:
Q  512 tttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcacga 572  Q
    ||||||| |||||| |||||||||||||||||| |||| |||||||||| || ||||||||    
T  48289087 tttgaacttcaaac-ttacatatattatacattatttccaccaactgagttaagctcacga 48289028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 544
Target Start/End: Original strand, 27279405 - 27279438
Alignment:
Q  511 gtttgaacctcaaacattacatatattatacatt 544  Q
    ||||||||||||||| ||||||||||||||||||    
T  27279405 gtttgaacctcaaaccttacatatattatacatt 27279438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 576
Target Start/End: Original strand, 28200379 - 28200452
Alignment:
Q  503 tggttggagtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcacgatgac 576  Q
    |||| |||||||||||||| ||  || ||||||||||  ||| || |||||||||||| || ||||||||||||    
T  28200379 tggtcggagtttgaacctcgaattttgcatatattatgtattgttcctaccaactgagttaagctcacgatgac 28200452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 560
Target Start/End: Original strand, 32563118 - 32563174
Alignment:
Q  503 tggttggagtttgaacctcaaacattacatatattatacattttttctaccaactgag 560  Q
    |||||| | |||||||| |||||||||||||||||||||||| ||  |||||||||||    
T  32563118 tggttgaaatttgaacc-caaacattacatatattatacattattcgtaccaactgag 32563174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 511 - 571
Target Start/End: Complemental strand, 25251569 - 25251509
Alignment:
Q  511 gtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcacg 571  Q
    ||||||||| ||||| ||| ||||||||| |||| ||| ||||||||||| || |||||||    
T  25251569 gtttgaaccccaaaccttatatatattatgcattgtttataccaactgagttaagctcacg 25251509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 511 - 563
Target Start/End: Original strand, 27158889 - 27158941
Alignment:
Q  511 gtttgaacctcaaacattacatatattatacattttttctaccaactgagcta 563  Q
    ||||||||||||||| || |||||||||| |||| ||  ||||||||||||||    
T  27158889 gtttgaacctcaaactttgcatatattattcattgttcttaccaactgagcta 27158941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 563
Target Start/End: Complemental strand, 29457241 - 29457188
Alignment:
Q  510 agtttgaacctcaaacattacatatattatacattttttctaccaactgagcta 563  Q
    |||||||||| ||||| ||| ||||||||| ||||||| |||||||||||||||    
T  29457241 agtttgaaccacaaaccttatatatattatgcatttttcctaccaactgagcta 29457188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 509 - 572
Target Start/End: Complemental strand, 2105966 - 2105903
Alignment:
Q  509 gagtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcacga 572  Q
    ||||||||||||| ||| ||||||||||||| |||| ||| ||||||| ||||||  |||||||    
T  2105966 gagtttgaacctcgaaccttacatatattatgcattgtttttaccaaccgagctaaactcacga 2105903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 544
Target Start/End: Complemental strand, 6503323 - 6503286
Alignment:
Q  507 tggagtttgaacctcaaacattacatatattatacatt 544  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  6503323 tggagtttgaaccccaaaccttacatatattatacatt 6503286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 540
Target Start/End: Original strand, 7338836 - 7338873
Alignment:
Q  503 tggttggagtttgaacctcaaacattacatatattata 540  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  7338836 tggttggagtttgaaccttaaaccttacatatattata 7338873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 576
Target Start/End: Complemental strand, 29069542 - 29069477
Alignment:
Q  511 gtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcacgatgac 576  Q
    |||||||||||| || || |||||||||| |||| |  ||| ||||||||||| ||||||||||||    
T  29069542 gtttgaacctcagacttttcatatattatgcattgtccctatcaactgagctaagctcacgatgac 29069477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 572
Target Start/End: Complemental strand, 4826352 - 4826288
Alignment:
Q  508 ggagtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcacga 572  Q
    |||||||||||||| ||| ||||||||||||| |||| | |||||||| ||| ||| | ||||||    
T  4826352 ggagtttgaacctcgaaccttacatatattatgcattgtctctaccaattgaactaagttcacga 4826288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 516 - 576
Target Start/End: Original strand, 6003388 - 6003448
Alignment:
Q  516 aacctcaaacattacatatattatacattttttctaccaactgagctacgctcacgatgac 576  Q
    |||||||||| | |||||||||||| ||| || |||||||||||| || ||| ||||||||    
T  6003388 aacctcaaacctaacatatattatatattgttcctaccaactgaggtaagcttacgatgac 6003448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 572
Target Start/End: Complemental strand, 34701209 - 34701145
Alignment:
Q  508 ggagtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcacga 572  Q
    ||||||||||||||| || || |||||||||| |||| || ||||||||||| ||| | ||||||    
T  34701209 ggagtttgaacctcagaccttgcatatattatgcattgttcctaccaactgaactaagttcacga 34701145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 512 - 572
Target Start/End: Complemental strand, 19248537 - 19248477
Alignment:
Q  512 tttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcacga 572  Q
    |||||||| |||||||| |||||||||| |||| | | |||||||||||||| ||||||||    
T  19248537 tttgaaccccaaacattgcatatattatgcattgtctataccaactgagctaagctcacga 19248477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 519 - 569
Target Start/End: Complemental strand, 29962409 - 29962359
Alignment:
Q  519 ctcaaacattacatatattatacattttttctaccaactgagctacgctca 569  Q
    ||||||| || ||||||||||||||| |||||| ||||||||||| |||||    
T  29962409 ctcaaaccttgcatatattatacattgtttctatcaactgagctaagctca 29962359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 519 - 569
Target Start/End: Original strand, 30012389 - 30012439
Alignment:
Q  519 ctcaaacattacatatattatacattttttctaccaactgagctacgctca 569  Q
    ||||||| || ||||||||||||||| |||||| ||||||||||| |||||    
T  30012389 ctcaaaccttgcatatattatacattgtttctatcaactgagctaagctca 30012439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 510 - 572
Target Start/End: Original strand, 37614428 - 37614490
Alignment:
Q  510 agtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcacga 572  Q
    |||||||||||| ||| || |||||||||| | || | |||||||||||||||| ||||||||    
T  37614428 agtttgaacctcgaaccttgcatatattatgcgttgtctctaccaactgagctaagctcacga 37614490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 570
Target Start/End: Original strand, 37791162 - 37791224
Alignment:
Q  508 ggagtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcac 570  Q
    |||||||||||||| ||| || |||||||||| | || |||||||||||||| ||| ||||||    
T  37791162 ggagtttgaacctcgaaccttgcatatattatgcgttgtttctaccaactgaactaagctcac 37791224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 516 - 580
Target Start/End: Complemental strand, 42102105 - 42102041
Alignment:
Q  516 aacctcaaacattacatatattatacattttttctaccaactgagctacgctcacgatgaccaat 580  Q
    |||| ||||| |||||||||||||||||| |  || |||||||||||  ||||||||||||||||    
T  42102105 aaccccaaaccttacatatattatacattgtccctgccaactgagctgagctcacgatgaccaat 42102041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 520 - 570
Target Start/End: Original strand, 6901465 - 6901515
Alignment:
Q  520 tcaaacattacatatattatacattttttctaccaactgagctacgctcac 570  Q
    |||||| || ||||||||||||||| || ||||||||||||||| ||||||    
T  6901465 tcaaaccttgcatatattatacattgttcctaccaactgagctaagctcac 6901515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 530 - 572
Target Start/End: Complemental strand, 33223908 - 33223866
Alignment:
Q  530 catatattatacattttttctaccaactgagctacgctcacga 572  Q
    |||||||||| |||| |||||||||||||||||| ||||||||    
T  33223908 catatattatgcattgtttctaccaactgagctaagctcacga 33223866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 563
Target Start/End: Original strand, 25289326 - 25289367
Alignment:
Q  522 aaacattacatatattatacattttttctaccaactgagcta 563  Q
    |||| |||||||||||||||||| ||| ||||||||||||||    
T  25289326 aaaccttacatatattatacattgtttttaccaactgagcta 25289367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 572
Target Start/End: Complemental strand, 48376890 - 48376833
Alignment:
Q  515 gaacctcaaacattacatatattatacattttttctaccaactgagctacgctcacga 572  Q
    ||||| ||||| ||||||||||||| |||| | | |||||||||||||| ||||||||    
T  48376890 gaaccccaaaccttacatatattatgcattatctttaccaactgagctaagctcacga 48376833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 511 - 571
Target Start/End: Complemental strand, 2563988 - 2563928
Alignment:
Q  511 gtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcacg 571  Q
    ||||||||||| ||| ||||||||||||| |||| ||| || |||||||| || |||||||    
T  2563988 gtttgaacctcgaaccttacatatattattcattatttttatcaactgagttaagctcacg 2563928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 512 - 560
Target Start/End: Complemental strand, 29791834 - 29791786
Alignment:
Q  512 tttgaacctcaaacattacatatattatacattttttctaccaactgag 560  Q
    |||||||||||||| |||||||||||||  ||| |||||| ||||||||    
T  29791834 tttgaacctcaaaccttacatatattatgtattgtttctatcaactgag 29791786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 511 - 559
Target Start/End: Complemental strand, 31463543 - 31463495
Alignment:
Q  511 gtttgaacctcaaacattacatatattatacattttttctaccaactga 559  Q
    |||||||||||| || ||||||||||||| |||| |||||| |||||||    
T  31463543 gtttgaacctcagaccttacatatattatgcattatttctatcaactga 31463495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 503 - 563
Target Start/End: Complemental strand, 53852802 - 53852742
Alignment:
Q  503 tggttggagtttgaacctcaaacattacatatattatacattttttctaccaactgagcta 563  Q
    ||||||||||||||| | ||||  ||||||||||||| |||| ||| | ||||||||||||    
T  53852802 tggttggagtttgaatcccaaattttacatatattatgcattgtttatgccaactgagcta 53852742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 578
Target Start/End: Complemental strand, 63921 - 63854
Alignment:
Q  511 gtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcacgatgacca 578  Q
    ||||||||||||||| ||  |||||||||||||| |  |||||||||||||||  ||||||| |||||    
T  63921 gtttgaacctcaaactttgtatatattatacattgtccctaccaactgagctaaactcacgaggacca 63854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 578
Target Start/End: Complemental strand, 71253 - 71186
Alignment:
Q  511 gtttgaacctcaaacattacatatattatacattttttctaccaactgagctacgctcacgatgacca 578  Q
    ||||||||||||||| ||  |||||||||||||| |  |||||||||||||||  ||||||| |||||    
T  71253 gtttgaacctcaaactttgtatatattatacattgtccctaccaactgagctaaactcacgaggacca 71186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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