View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5015_high_23 (Length: 335)
Name: NF5015_high_23
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 26309725 - 26309419
Alignment:
| Q |
18 |
aaatgttactatat--atgttgatcatatagtaaaatcgttcttttttattgatggtatcaatcaatctcattgatttgtttttggagaattattacctt |
115 |
Q |
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| T |
26309725 |
aaatgttactatatgtatgttgatcatatagtaaaatcgttcttttttattgatggtatcaatcaatctcattgatttgtttttggagaattattacctt |
26309626 |
T |
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| Q |
116 |
ccttgtatgtacttcaactactagtttataactccctctttttctgatgaaaattgcactatgatgttgggtgggaaggacaaaagggataagacaaaac |
215 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26309625 |
ccttgtatatacttcaactactagtttataactccctctttttctgatgaatattgcactatgatgttgggtgagaaggacaaaagggataagacaaaac |
26309526 |
T |
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| Q |
216 |
ttgtttgttagagatccaattgcaatagaattacctcaaagccatcatccacacaatacaaaggaggatctcgacatcatgaacaggtcaatttaattat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26309525 |
ttgtttgttagagatccaattgcaatagaattacctcaaagc---catccacacgatacaaaggaggatctcgacatcatgaacaggtcaatttaattat |
26309429 |
T |
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| Q |
316 |
caaccctatg |
325 |
Q |
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|||||||||| |
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| T |
26309428 |
caaccctatg |
26309419 |
T |
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