View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5015_high_28 (Length: 278)

Name: NF5015_high_28
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5015_high_28
NF5015_high_28
[»] chr5 (1 HSPs)
chr5 (13-261)||(37935242-37935489)
[»] chr4 (10 HSPs)
chr4 (70-231)||(10570993-10571158)
chr4 (96-231)||(10553293-10553428)
chr4 (81-157)||(10482452-10482528)
chr4 (41-159)||(10475482-10475598)
chr4 (67-159)||(10464547-10464639)
chr4 (41-159)||(10484704-10484820)
chr4 (95-157)||(10468313-10468375)
chr4 (79-159)||(829343-829422)
chr4 (78-154)||(8437026-8437102)
chr4 (78-154)||(8447380-8447456)
[»] chr3 (2 HSPs)
chr3 (30-172)||(25900962-25901102)
chr3 (82-231)||(25915030-25915179)
[»] chr8 (1 HSPs)
chr8 (70-157)||(42846149-42846236)
[»] chr1 (1 HSPs)
chr1 (67-155)||(50645220-50645306)
[»] chr2 (1 HSPs)
chr2 (81-147)||(25377304-25377370)


Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 261
Target Start/End: Complemental strand, 37935489 - 37935242
Alignment:
Q  13 aatattaaagcagtctaattatatactaacaaggattttaaagcaagtacgagaaacatacatgcagtaacataaattctatcaagtaatatgaggaaga 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||| ||||||| ||||||||||||||||||    
T  37935489 aatattaaagcagtctaattatatactaacaaggattttaaagcaagtagga--aacatacatgcagtaacatgaattctagcaagtaatatgaggaaga 37935392  T
Q  113 gagactcactttcattgagtcggaaccaaactttcaacgtaatcctttgcccacaaccaccatgttctattagtaattctaattttctcacatttattct 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37935391 gagactcactttcattgagtcggaaccaaactttcaacgtaatcctttgcccgcaaccaccatgttctattagtaattctaattttctcacatttattct 37935292  T
Q  213 ctctgcaattat-aaataaacgctttgtagtgagggttggagatgagagt 261  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||    
T  37935291 ctctgcaattttaaaataaacgctttgtagtgagggttggagatgagagt 37935242  T

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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 70 - 231
Target Start/End: Original strand, 10570993 - 10571158
Alignment:
Q  70 atacatgcagtaacataaattctatc----aagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcctttgccca 165  Q
    ||||||| ||||||||||||||||      ||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| |||||    
T  10570993 atacatgaagtaacataaattctaattaaaaagtaatatgaggaagagaaactcactttcatcgagttggaaccaaactttcaacgtaatccttggccca 10571092  T
Q  166 caaccaccatgttctattagtaattctaattttctcacatttattctctctgcaattataaataaa 231  Q
     ||||||||| || |||||||||||||||||| ||| | | |||| |||||||||||||| |||||    
T  10571093 taaccaccatattttattagtaattctaatttgctcgcctctattgtctctgcaattatagataaa 10571158  T

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Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 96 - 231
Target Start/End: Original strand, 10553293 - 10553428
Alignment:
Q  96 aagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcctttgcccacaaccaccatgttctattagtaattctaat 195  Q
    ||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| ||||| ||||||||| || ||||||||||||||||    
T  10553293 aagtaatatgaggaagagaaactcactttcatcgagttggaaccaaactttcaacgtaatccttggcccataaccaccatattttattagtaattctaat 10553392  T
Q  196 tttctcacatttattctctctgcaattataaataaa 231  Q
    || ||| | | |||| |||||||||||||| |||||    
T  10553393 ttgctcgcctctattgtctctgcaattatagataaa 10553428  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 10482528 - 10482452
Alignment:
Q  81 aacataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcc 157  Q
    ||||||||||| | ||||||||||| |||||||| ||||||||||| ||||||| ||||||||||||||||||||||    
T  10482528 aacataaattcaaacaagtaatatgtggaagagaaactcactttcaatgagtcgaaaccaaactttcaacgtaatcc 10482452  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 10475598 - 10475482
Alignment:
Q  41 acaaggattttaaagcaagtacgagaaacatacatgcagtaacataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaacca 140  Q
    ||||||||||||| |||||||  || |||||||||| | ||| |||||||| | ||||||||||| |||||||| |||||||||||  | |||| ||| |    
T  10475598 acaaggattttaaggcaagta--agcaacatacatgaaataatataaattcaaacaagtaatatgtggaagagaaactcactttcaacgtgtcgaaacta 10475501  T
Q  141 aactttcaacgtaatcctt 159  Q
    |||||||||||||||||||    
T  10475500 aactttcaacgtaatcctt 10475482  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 10464639 - 10464547
Alignment:
Q  67 aacatacatgcagtaacataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcctt 159  Q
    |||||| ||| ||||| |||||||||| ||||||||||| |||||||| |||||||||||  | |||| ||| | ||||||||||||||||||    
T  10464639 aacataaatgaagtaatataaattctaacaagtaatatgtggaagagaaactcactttcaacgtgtcgaaactagactttcaacgtaatcctt 10464547  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 159
Target Start/End: Complemental strand, 10484820 - 10484704
Alignment:
Q  41 acaaggattttaaagcaagtacgagaaacatacatgcagtaacataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaacca 140  Q
    |||||||||||||  ||||||  |||||||| |||| ||||  |||||||| | ||||||||||| |||||||| |||||||||||  | |||| ||| |    
T  10484820 acaaggattttaagacaagta--agaaacatgcatgaagtagtataaattcaaacaagtaatatgtggaagagacactcactttcaacgtgtcgaaacta 10484723  T
Q  141 aactttcaacgtaatcctt 159  Q
     ||||||||||||||||||    
T  10484722 gactttcaacgtaatcctt 10484704  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 10468375 - 10468313
Alignment:
Q  95 caagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcc 157  Q
    ||||||||||| |||||||| ||||||||||| ||||||  ||||||||||||||||||||||    
T  10468375 caagtaatatgtggaagagaaactcactttcaatgagtcaaaaccaaactttcaacgtaatcc 10468313  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 829343 - 829422
Alignment:
Q  79 gtaacataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcctt 159  Q
    ||||||||||||| | ||||| ||||| | |||||| |||||||||||| || ||| |||||||||||||| |||||||||    
T  829343 gtaacataaattcaaacaagtcatatgtgaaagagaaactcactttcatagaatcgaaaccaaactttcaa-gtaatcctt 829422  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 8437026 - 8437102
Alignment:
Q  78 agtaacataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaa 154  Q
    ||||||| |||||| |  |||||||||| |||| ||| |||||| ||||  |||||| |||||||||||||||||||    
T  8437026 agtaacaaaaattcaaaaaagtaatatgtggaatagaaactcacattcaacgagtcgaaaccaaactttcaacgtaa 8437102  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 8447380 - 8447456
Alignment:
Q  78 agtaacataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaa 154  Q
    ||||||| |||||  | ||||||||||| |||| ||| |||||| ||||  |||||| |||||||||||||||||||    
T  8447380 agtaacaaaaattaaaacaagtaatatgtggaatagaaactcacattcaacgagtcgaaaccaaactttcaacgtaa 8447456  T

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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 30 - 172
Target Start/End: Original strand, 25900962 - 25901102
Alignment:
Q  30 attatatactaacaaggattttaaagcaagtacgagaaacatacatgcagtaacataaattctatcaagtaatatgaggaagagagactcactttcattg 129  Q
    |||||| ||| |||||||||||||||||||||  || || ||||||| |||||||||||||||| ||||||||||||| |||||| |||||||||||       
T  25900962 attataaactgacaaggattttaaagcaagta--agcaatatacatgaagtaacataaattctaacaagtaatatgagaaagagaaactcactttcaact 25901059  T
Q  130 agtcggaaccaaactttcaacgtaatcctttgcccacaaccac 172  Q
    ||| | |||||||||||||||||||||||| ||||||||||||    
T  25901060 agttgaaaccaaactttcaacgtaatccttggcccacaaccac 25901102  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 231
Target Start/End: Original strand, 25915030 - 25915179
Alignment:
Q  82 acataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcctttgcccacaaccaccatgttcta 181  Q
    |||||||||||||||||||||||||  |||||| |||||||||||   ||| | |||||||||||||||||||||||| ||||||||||||| |  | ||    
T  25915030 acataaattctatcaagtaatatgaaaaagagaaactcactttcaactagttgaaaccaaactttcaacgtaatccttagcccacaaccaccgtacttta 25915129  T
Q  182 ttagtaattctaattttctcacatttattctctctgcaattataaataaa 231  Q
    |||||||||  ||||  ||| | | |||| |||||||| ||||| |||||    
T  25915130 ttagtaatttgaattggctcgcctctattttctctgcatttatagataaa 25915179  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 157
Target Start/End: Original strand, 42846149 - 42846236
Alignment:
Q  70 atacatgcagtaacataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaatcc 157  Q
    ||||||| || ||||||||||| | ||||||||||| ||||||||  |||||||||| ||||||||||| ||||||||||| ||||||    
T  42846149 atacatgaagaaacataaattcaaacaagtaatatgtggaagagacgctcactttcaatgagtcggaactaaactttcaacataatcc 42846236  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 50645220 - 50645306
Alignment:
Q  67 aacatacatgcagtaacataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttcaacgtaat 155  Q
    |||||||||| || ||| ||||||| | |||||||| ||  ||||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  50645220 aacatacatgaagaaacgtaaattcaaacaagtaatgtg--gaagagaaactcactttcaatgagtcggaactaaactttcaacgtaat 50645306  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 25377370 - 25377304
Alignment:
Q  81 aacataaattctatcaagtaatatgaggaagagagactcactttcattgagtcggaaccaaactttc 147  Q
    ||||| ||||| ||||||||||||| |||||||| ||||||||| | ||||||  ||||| ||||||    
T  25377370 aacattaattcaatcaagtaatatgtggaagagaaactcacttttaatgagtcaaaaccatactttc 25377304  T

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