View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5015_high_29 (Length: 270)
Name: NF5015_high_29
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 40666735 - 40666493
Alignment:
| Q |
12 |
acagacagcaaaaaaggaatgacccattgactgatgaagtaatcaactaatgatttctaaatataggagtcgtataaaaaa-ctaacagtttcgcgtaga |
110 |
Q |
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| T |
40666735 |
acagacagcaaaaaaggaatgacccattgactgatcaagtaatcaactaatgatttctaaatataggagtcgtataaaaaaactaacagtttcgcgtaga |
40666636 |
T |
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| Q |
111 |
gctgatgggttgcttgttccaagtgcagtatgcaaatgctcatttgtaactgccatggaatttagtatttcagcatcaatagtctcatcctctaagtcaa |
210 |
Q |
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| T |
40666635 |
gctgatgggttgcttgttccaagtgcagtatgcaaatgctcatttgtaactgccatggaatttagtatttcagcatcaatagtctcatcctctaagtcaa |
40666536 |
T |
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| Q |
211 |
tgacgtccatcttctccctaatgcattggagagcagcttcagt |
253 |
Q |
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| T |
40666535 |
tgacgtccatcttctccctaatgcattgtagagcagcttcagt |
40666493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 253
Target Start/End: Original strand, 40723270 - 40723513
Alignment:
| Q |
12 |
acagacagcaaaaaaggaatgacccattgactgatgaagtaatcaactaatgatttctaaatataggagtcgtataaaaaac--taacagtttcgcgtag |
109 |
Q |
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||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| | | ||||| |||||||||| ||||| |
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| T |
40723270 |
acagacaacaaaaaaggaatgactcattgactgatcaagtaatcaactaatgatttctaaatataggagtcggaaagaaaacactaacagtttcacgtag |
40723369 |
T |
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| Q |
110 |
agctgatgggttgcttgttccaagtgcagtatgcaaatgctcatttgtaactgccatggaatttagtatttcagcatcaatagtctcatcctctaagtca |
209 |
Q |
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| T |
40723370 |
agctgatgggttgcttgttccaagtgcggtatggaaatgctcatttgtaactgccatagaatttagtatttcagcatcaatagtctcatcctctaagtca |
40723469 |
T |
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| Q |
210 |
atgacgtccatcttctccctaatgcattggagagcagcttcagt |
253 |
Q |
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| T |
40723470 |
atgacgtccatcttctccctaatgcattgtagagcagcttcagt |
40723513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 41092395 - 41092489
Alignment:
| Q |
144 |
aaatgctcatttgtaactgccatggaatttagtatttcagcatcaatagtctcatcctctaagtcaatgacgtccatcttctccctaatgcattg |
238 |
Q |
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| T |
41092395 |
aaatgctcatttgtcactgccatggagttcaatatttcagcatcaattgtctcatcttccaagtcaatcacgtccattttttccctgatgcattg |
41092489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 253
Target Start/End: Complemental strand, 27977951 - 27977797
Alignment:
| Q |
99 |
gtttcgcgtagagctgatgggttgcttgttccaagtgcagtatgcaaatgctcatttgtaactgccatggaatttagtatttcagcatcaatagtctcat |
198 |
Q |
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||||| || ||||| || || ||||||| ||||||||| ||| ||||| |||||||| || ||||| || || ||||| ||||||||||| || |||| |
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| T |
27977951 |
gtttcacggagagcagaaggattgcttgatccaagtgcggtactgaaatgttcatttgtgaccgccattgagttaagtatctcagcatcaatggtttcat |
27977852 |
T |
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| Q |
199 |
cctctaagtcaatgacgtccatcttctccctaatgcattggagagcagcttcagt |
253 |
Q |
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| |||| |||||| || ||||| ||||| || ||||| || || ||||| ||||| |
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| T |
27977851 |
cttctaggtcaatcacatccattttctctctgatgcactgaagtgcagcctcagt |
27977797 |
T |
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