View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5015_high_35 (Length: 250)
Name: NF5015_high_35
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 12122140 - 12122358
Alignment:
| Q |
15 |
acatcatcagcagatagatccataagaagctttctatgaggctgccataatttgttactgggacccacagacctcaacccagagattctaaaccctaatt |
114 |
Q |
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| T |
12122140 |
acatcatcagcagatagatccataagaagctttctatgaggctgccataatttgttactgggacccacagacctcaacccagagattctaaaccctaatt |
12122239 |
T |
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| Q |
115 |
ttatcgtagaagattctcgatctttctggaggcatttccgaatgtaatcttcggaggattgagggtgccatgttcgagaaccaatcttgatgtcgacgac |
214 |
Q |
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| T |
12122240 |
ttatcgtagaagattctcgatctttctggaggcatttccgaatataatcttcggaggattgaggttgccatgttcgagaaccaatcttgatgtcgacgac |
12122339 |
T |
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| Q |
215 |
agcggcgttggtgtaattg |
233 |
Q |
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| T |
12122340 |
agcggcgttggtgtaattg |
12122358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 14691659 - 14691877
Alignment:
| Q |
15 |
acatcatcagcagatagatccataagaagctttctatgaggctgccataatttgttactgggacccacagacctcaacccagagattctaaaccctaatt |
114 |
Q |
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||||||||| |||||||||||||||||| |||| |||||||||||||||||| ||| |||||||||| |||||||| || ||||||||||||||||||| |
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| T |
14691659 |
acatcatcaacagatagatccataagaaactttttatgaggctgccataattgattagtgggacccactgacctcaaaccggagattctaaaccctaatt |
14691758 |
T |
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| Q |
115 |
ttatcgtagaagattctcgatctttctggaggcatttccgaatgtaatcttcggaggattgagggtgccatgttcgagaaccaatcttgatgtcgacgac |
214 |
Q |
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| T |
14691759 |
tgatactagaagattctcgatctttctggaggcatttccggatgtaatcttcagaggactgtgggtgccatgttcgtgaaccgatcttgatgtcgacgac |
14691858 |
T |
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| Q |
215 |
agcggcgttggtgtaattg |
233 |
Q |
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| T |
14691859 |
ggcagggttggtgtaattg |
14691877 |
T |
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