View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5015_high_4 (Length: 574)
Name: NF5015_high_4
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 11 - 558
Target Start/End: Complemental strand, 28014649 - 28014102
Alignment:
| Q |
11 |
ttatactaggaaattagaaggnnnnnnnggtgagtgaatccttagatgagagtgagattcttttgaatcggggtttgcaaacttttagttaaaatgcaaa |
110 |
Q |
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| T |
28014649 |
ttatactaggaaattagaaggaaaaaaaggtgagtgaatccttagatgagagtgagattcttttgaatcggggtgtgcaaactttcagttaaaatgcaaa |
28014550 |
T |
|
| Q |
111 |
tgaatattggttagtatgtgtaattttgaaattaaatcctccagttgtgaaacaataagtcaacaactttacgttctttcttcatgttattttcttgcac |
210 |
Q |
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| T |
28014549 |
tgaatattggttagtatgtgtaattttgaaattaaatccttcagttgtgaaacaataagtcaacagctttacggtctttcttgatgttattttcttgcac |
28014450 |
T |
|
| Q |
211 |
attcaaatgtaattttaaaaatgcgaatgcaagcaattttatacacggacatgtattggcagatgaatcaataactttagttacgagacataaagagcaa |
310 |
Q |
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| T |
28014449 |
attcaaatgtaatttaaaaaatgcgaatgcaagcaattttatacacggacatgtattggcagatgaatcaataactttagttacaagacataaagagcaa |
28014350 |
T |
|
| Q |
311 |
caacttagaactgacatatgctgcataaattgccaaaaaatttcac-aggtaaacttgatagtaagatctttgctatttgcaattgcaacgatctacaac |
409 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28014349 |
caacttagaactgacatatgctgcataaattgcca-aaaatttcacaaggttaacttgattgtaagatctttgctatttgcaattgcaacgatctacaac |
28014251 |
T |
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| Q |
410 |
atacaatttgtcacttttactcatgccaggagaaatttttcaatgcaaaacagcttgattaggtgtgacagtctggttaataaccagtctccggatatcg |
509 |
Q |
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| T |
28014250 |
acacaatttgtcacttttacttatgccaggagaaatttttcaatgcaaaacagcttgattaggtgtgacagtctggttaataaccagtctccggatatcg |
28014151 |
T |
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| Q |
510 |
tagaattttttcctgccacaccagatcgagtaattgtctaagataaatg |
558 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28014150 |
tggaattttttcctgccacaccagatcgagtaattgtctaagataaatg |
28014102 |
T |
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