View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5015_high_8 (Length: 447)
Name: NF5015_high_8
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 36970508 - 36970936
Alignment:
| Q |
1 |
attagaaatgttcttcttcattgattccatcttcagaaaaggaaaggaactacaaatgaactccaagattgatttgaaggagcaaaccctacttaaagat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36970508 |
attagaaatgttcttcttcattgattccatcttcagaaaaggaaaggaactacatattaactccaagattgatttgaaggagcaaaccctacttaaagat |
36970607 |
T |
|
| Q |
101 |
acgctagaaaagcgtggattttatgagttctcttttgtagtccaatccgtaacgaaatagaagcnnnnnnn-catttgacttttaaaacccttttaactg |
199 |
Q |
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| T |
36970608 |
actctagaaaagcatggattttatgagttctcttttgtagtccaatccgtaacgaaatagaagcaaaaaaaacatttgacttttaaaacccttttaactg |
36970707 |
T |
|
| Q |
200 |
cttatattttcttaccgatgactactatgtttggtacttggatttgttgcatcttcttcaaacttgtcttttgcagtttcatgaagtttgttctgattta |
299 |
Q |
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| T |
36970708 |
cttgtattttcttaccgatgactactatgtttggtacttggatttgttgcatcttcttcaaacttgtcttttgcagtttcatgaagtttgttctgattta |
36970807 |
T |
|
| Q |
300 |
ttctaataagttcagcttgtctgaatttatacaagtaccttccaatagcttcagcatagttgtcaaaccctaacgaacacagagcccaacagatatcatc |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36970808 |
ttctaataagttcagcttgtctgaatttatacaagtaccttccaatagcttcagcatagttgtcaaaccctaacgaacacagagcccaacagatatcgtc |
36970907 |
T |
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| Q |
400 |
cccattaacggtcttgcgattctccttgt |
428 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
36970908 |
cccattaacggtcttgcgattctccttgt |
36970936 |
T |
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