View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5015_low_1 (Length: 798)
Name: NF5015_low_1
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 655; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 1 - 789
Target Start/End: Complemental strand, 12122162 - 12121375
Alignment:
| Q |
1 |
atggatctatctgctgatgatgtgatgttggttttgaggaaatttgtttcgtcggatggtgatgttgatgaacctgatgttgtttttgggtctagggttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12122162 |
atggatctatctgctgatgatgtgatgttggttttgaggaaatttgtttcgtcggatggtgatgttgatgaacctgatgttgtttttgggtctagggttt |
12122063 |
T |
|
| Q |
101 |
ttgttcctgttttggaggaattgttggagcttaagaaatggtttgaagttcaaactatttttcatttttattcgtgttctgttcttgtggtttatgaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12122062 |
ttgttcctgttttggaggaattgttggagcttaagaaatggtttgaagttcaaactatttttcatttttattcgtgttctgttcttgtggtttatgaaaa |
12121963 |
T |
|
| Q |
201 |
agatgaaaaggaggatgagaaaaagagtgcacgtgctgttgttaagctaattgattttgctcacgtggttgatgctaaaggtgctattgatcataatttc |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12121962 |
agatgaaaaggagaatgagaaaaagagtgcacgtgctgttgttaagcttattgattttgctcacgtggttgatgctaaaggtgctattgatcataatttc |
12121863 |
T |
|
| Q |
301 |
ttagggggtctttgttctttaattaagtttgttaaggatgttttggctggtttaggtgatgctggaaacaatgtttctaaagatgaatgctgaatgctaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12121862 |
ttagggggtctttgttctttaattaagtttgttaaggatgttttggctggtttaggtgatgctggaaacaatgtttctaaagatgaatgttgaatgctaa |
12121763 |
T |
|
| Q |
401 |
gtgagaaagagtgattatcactggtaaagatctcgtgaaagattgcactgatgtagggaacaaatgacaggaaatgtaagtgtaaagttccgcgatgtat |
500 |
Q |
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| T |
12121762 |
gtgagaaagagtgattatcactggtaaagctctcgtgaaagattgcactgatgtagggaacaaatgacaggaaatgtaagtgtaaaattccgcgatgtat |
12121663 |
T |
|
| Q |
501 |
attagcggaaga--tttctttaagcagatagatggatagataaatagatttggtttatgttgcagttagctcaaatttgatgctgatgagttaaacaaag |
598 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12121662 |
attagcggaagatttttctttaagcagatagatggatagataaatagatatggttaatgttgcaattagctcaaatttgatgctgatgagttaaacaaag |
12121563 |
T |
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| Q |
599 |
ctttatttttcttgttctttgactaataagacgactactttgtaaggtcttttgagactgtttacagagtttcaaatgatgctttgatttcaatttggat |
698 |
Q |
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| T |
12121562 |
ctttatttttcatgttctttgactaataagatgactactttgtaaggtctttt-tgactgtttacagagtttcaaaggatgttttaatttcaatttgga- |
12121465 |
T |
|
| Q |
699 |
ttactagaaagta----tgcctaaatgtggttattttagtttggatctatacttgttagtagctgttatgtattttacctttgatgtgtgatgat |
789 |
Q |
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| T |
12121464 |
ttactagaaagtatgtttggttaaacgtgg-----ttactttggatctatacttgttagtagctgttatctattttacctttgatgtgtgatgat |
12121375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 14691681 - 14691331
Alignment:
| Q |
1 |
atggatctatctgctgatgatgtgatgttggttttgaggaaatttgtttcgtcggatggtgatgttgatgaacctgatgttgtttttgggtctagggttt |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||| || || ||| ||||||||||||||||| |||||||||||||||||| | |
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| T |
14691681 |
atggatctatctgttgatgatgtgatgttggttttgaggaaatttgtttcttcagacggtaatgttgatgaacctgattgtgtttttgggtctagggtgt |
14691582 |
T |
|
| Q |
101 |
ttgttcctgttttggaggaattgttggagcttaagaaatggtttgaagttcaaactatttttcatttttattcgtgttctgttcttgtggtttatgaaaa |
200 |
Q |
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| T |
14691581 |
ttgttcctattttggaggaattattggagcttaagaaatggtttgaagttcaaactatttttcatttttattcatgttctgttcttgtggtttatgagaa |
14691482 |
T |
|
| Q |
201 |
agatgaaaaggaggatgagaaaaagagtgcacgtgctgttgttaagctaattgattttgctcacgtggttgatgctaaaggtgctattgatcataatttc |
300 |
Q |
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||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14691481 |
agatgaaaaggaggatgagaagaagagtgcaagtgctgttgttaagcttgttgattttgctcatgtggttgatgctaaaggtgctattgatcataatttc |
14691382 |
T |
|
| Q |
301 |
ttagggggtctttgttctttaattaagtttgttaaggatgttttggctggt |
351 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||||| ||||| |
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| T |
14691381 |
ttagggggtctctgttctttgattaagtttgttaaggatgttttgactggt |
14691331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 533 - 690
Target Start/End: Original strand, 14670021 - 14670180
Alignment:
| Q |
533 |
gatagataaatagatttggtttatgttgcagttagctcaaatttgatgctgatgagttaaacaaagctttatttttcttgttctttgactaataagacga |
632 |
Q |
| |
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|||||||| ||| ||| ||| ||||||||| | ||||||| |||||| || ||| ||||||||||||||||||||| |||| ||||||| ||||| || |
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| T |
14670021 |
gatagatagatatattcggtatatgttgcaatcagctcaagtttgattttgttgacttaaacaaagctttatttttcatgttatttgacttataagttga |
14670120 |
T |
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| Q |
633 |
ct-actttgtaaggtcttttgagactg-tttacagagtttcaaatgatgctttgatttca |
690 |
Q |
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| | ||| |||||||||| || |||| ||| || ||||||||||||||||| |||||| |
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| T |
14670121 |
ttgattttataaggtctttcgacactgttttgcattgtttcaaatgatgctttaatttca |
14670180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 557 - 699
Target Start/End: Complemental strand, 14643252 - 14643107
Alignment:
| Q |
557 |
gttgcagttagctcaaatttgatgctgatgagttaaacaaagctttatttttcttgttctttgactaataagacgact-actttgtaaggtcttttgaga |
655 |
Q |
| |
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|||||| | ||||||| |||||| || ||| || ||| |||||||||||||| |||| ||||||| ||||| |||| | |||||||||||||| || | |
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| T |
14643252 |
gttgcaatcagctcaagtttgattttgttgacttgaacgaagctttatttttcatgttatttgacttataagttgactgattttgtaaggtctttcgaca |
14643153 |
T |
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| Q |
656 |
ctg-tttacagagtttcaaatgatgctttgatttcaa-tttggatt |
699 |
Q |
| |
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||| ||| || ||||||||||||||||| ||||||| |||||||| |
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| T |
14643152 |
ctgttttgcattgtttcaaatgatgctttaatttcaagtttggatt |
14643107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 694
Target Start/End: Complemental strand, 14691146 - 14691093
Alignment:
| Q |
641 |
taaggtcttttgagactgtttacagagtttcaaatgatgctttgatttcaattt |
694 |
Q |
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||||||||||||| | |||||||||||||| |||||||||| |||||||||| |
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| T |
14691146 |
taaggtcttttgaaaagttttacagagtttcagatgatgctttaatttcaattt |
14691093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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