View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5015_low_21 (Length: 351)

Name: NF5015_low_21
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5015_low_21
NF5015_low_21
[»] chr4 (26 HSPs)
chr4 (18-217)||(43913765-43913964)
chr4 (283-331)||(48845786-48845834)
chr4 (283-334)||(46397380-46397431)
chr4 (283-341)||(45170700-45170758)
chr4 (283-341)||(45505340-45505398)
chr4 (283-341)||(4416550-4416608)
chr4 (283-341)||(4416758-4416816)
chr4 (283-341)||(11306534-11306592)
chr4 (283-341)||(18414796-18414854)
chr4 (283-341)||(36752933-36752991)
chr4 (283-341)||(49983867-49983925)
chr4 (280-341)||(43913674-43913735)
chr4 (283-334)||(18414974-18415025)
chr4 (286-341)||(37724705-37724760)
chr4 (294-341)||(45170825-45170872)
chr4 (283-341)||(20870901-20870959)
chr4 (283-341)||(45505133-45505191)
chr4 (283-341)||(49984079-49984137)
chr4 (283-341)||(54702270-54702328)
chr4 (284-341)||(52485622-52485679)
chr4 (286-341)||(17524484-17524539)
chr4 (283-341)||(2516470-2516528)
chr4 (283-317)||(4416811-4416845)
chr4 (283-341)||(37724513-37724571)
chr4 (290-339)||(43913475-43913524)
chr4 (294-338)||(40426110-40426154)
[»] chr1 (13 HSPs)
chr1 (283-341)||(34518235-34518293)
chr1 (283-341)||(31872880-31872938)
chr1 (283-334)||(143101-143152)
chr1 (286-341)||(37245714-37245769)
chr1 (283-341)||(33459969-33460027)
chr1 (283-331)||(31872753-31872801)
chr1 (283-341)||(3073052-3073110)
chr1 (294-341)||(14420060-14420107)
chr1 (284-331)||(34518039-34518086)
chr1 (283-341)||(3075201-3075259)
chr1 (283-341)||(35795387-35795445)
chr1 (283-341)||(42604704-42604762)
chr1 (283-331)||(18519391-18519439)
[»] chr7 (8 HSPs)
chr7 (283-341)||(36469815-36469873)
chr7 (280-330)||(34535762-34535812)
chr7 (283-321)||(7460645-7460683)
chr7 (283-341)||(48461866-48461924)
chr7 (288-341)||(10017671-10017724)
chr7 (283-333)||(24188187-24188237)
chr7 (289-341)||(6376640-6376692)
chr7 (283-334)||(22566377-22566426)
[»] scaffold0056 (2 HSPs)
scaffold0056 (286-341)||(62803-62858)
scaffold0056 (283-341)||(63004-63062)
[»] chr8 (13 HSPs)
chr8 (283-334)||(18429611-18429662)
chr8 (289-341)||(16049760-16049812)
chr8 (283-334)||(34439511-34439562)
chr8 (283-341)||(18429487-18429545)
chr8 (283-341)||(34687828-34687886)
chr8 (283-341)||(16049554-16049612)
chr8 (283-331)||(4623143-4623191)
chr8 (286-330)||(7644856-7644900)
chr8 (283-331)||(9710290-9710338)
chr8 (283-334)||(7535541-7535592)
chr8 (283-334)||(34439296-34439347)
chr8 (283-341)||(21446057-21446115)
chr8 (286-334)||(7645071-7645119)
[»] chr3 (5 HSPs)
chr3 (283-341)||(54341277-54341335)
chr3 (283-341)||(33419822-33419880)
chr3 (283-331)||(33419614-33419662)
chr3 (286-334)||(51388046-51388094)
chr3 (289-330)||(30548023-30548064)
[»] chr2 (14 HSPs)
chr2 (283-341)||(13490248-13490306)
chr2 (283-341)||(29526874-29526932)
chr2 (283-341)||(44995340-44995398)
chr2 (290-341)||(32622469-32622520)
chr2 (283-341)||(1353112-1353170)
chr2 (283-341)||(27956799-27956857)
chr2 (283-334)||(1352906-1352957)
chr2 (283-326)||(14473551-14473594)
chr2 (283-341)||(3217359-3217417)
chr2 (283-341)||(6795452-6795510)
chr2 (283-341)||(13490454-13490511)
chr2 (283-341)||(15988530-15988588)
chr2 (283-328)||(29526669-29526714)
chr2 (289-330)||(32644048-32644089)
[»] scaffold0548 (1 HSPs)
scaffold0548 (283-341)||(3312-3370)
[»] chr6 (5 HSPs)
chr6 (283-341)||(10567742-10567800)
chr6 (283-330)||(22793588-22793635)
chr6 (283-330)||(28613240-28613287)
chr6 (296-341)||(17343165-17343210)
chr6 (283-331)||(10567537-10567585)
[»] chr5 (2 HSPs)
chr5 (283-334)||(33992409-33992460)
chr5 (283-341)||(33992616-33992674)
[»] scaffold0400 (1 HSPs)
scaffold0400 (289-329)||(9865-9905)
[»] scaffold0365 (1 HSPs)
scaffold0365 (289-329)||(10508-10548)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 43913964 - 43913765
Alignment:
Q  18 atacgtagatggtcacattgtgtttcatgtttttcttagggggcattgtgtttcacgattgtctctttttaatttagaaacacaaaagtacctatataga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43913964 atacgtagatggtcacattgtgtttcatgtttttcttagggggcattgtgtttcacgattgtctctttttaatttagaaacacaaaagtacccatataga 43913865  T
Q  118 ccattaaaccacaaattatatctttttctttgagagtaaattatatctatcttccctagcactgcaacatgtggtcatattgagaaagacttaattgcat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43913864 ccattaaaccacaaattatatctttttctttgagagtaaattatatctatcttccctagcactgcaacatgcggtcatattgagaaagacttaattgcat 43913765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 48845786 - 48845834
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcac 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48845786 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcac 48845834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 46397380 - 46397431
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgtt 334  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  46397380 tggtcccttacgttttaaaagttttaagttggtccaaaacgttactcacgtt 46397431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 45170700 - 45170758
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||||||||| ||||||    
T  45170700 tggtcccttaggttttaaaagtttcaagttggtccaaaatgttactcacgttggaataa 45170758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 45505398 - 45505340
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||||||||||||| ||| |||||||||||||| ||||||||| |||||||||    
T  45505398 tggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacattagaataa 45505340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 4416550 - 4416608
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||| ||||||||||||| ||| |||||||||||||| |||||||||||| ||||||    
T  4416550 tggtcctttacgttttaaaagtttcaagttggtccaaaacgttactcacgttggaataa 4416608  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 4416816 - 4416758
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    ||||||||||| |||||||| |||||||||||||||||| ||||||||| || ||||||    
T  4416816 tggtcccttacattttaaaagttttaagttggtccaaaacgttactcacattggaataa 4416758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 11306592 - 11306534
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||||||||||||| ||| |||||||||||||| ||||||||| || ||||||    
T  11306592 tggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcactttggaataa 11306534  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 18414796 - 18414854
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    ||||||||||| |||||||||||| |||||||| ||||| |||||||||||| ||||||    
T  18414796 tggtcccttacattttaaaaatttcaagttggttcaaaacgttactcacgttggaataa 18414854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 36752933 - 36752991
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||| |||||| ||||||    
T  36752933 tggtcccttgcgttttaaaaatttcaagttggtccaaaacgttacccacgttggaataa 36752991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 49983867 - 49983925
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||||||| || ||||||    
T  49983867 tggtcccttatgttttaaaaattttaagttggttcaaaacgttactcacatttgaataa 49983925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 341
Target Start/End: Complemental strand, 43913735 - 43913674
Alignment:
Q  280 agctggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||| |||| ||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||    
T  43913735 agctagtcctttacgttttcaaaatttcaagttggtccaaaatattattcacgttagaataa 43913674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 334
Target Start/End: Complemental strand, 18415025 - 18414974
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgtt 334  Q
    ||||||||| |||||||||| ||| |||||||||||||| ||||||||||||    
T  18415025 tggtcccttgcgttttaaaagtttcaagttggtccaaaacgttactcacgtt 18414974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 341
Target Start/End: Complemental strand, 37724760 - 37724705
Alignment:
Q  286 tcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    ||||||| ||||||||| ||| |||||||||||||| |||||||||||| ||||||    
T  37724760 tcccttaggttttaaaagtttcaagttggtccaaaacgttactcacgttggaataa 37724705  T

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Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 45170872 - 45170825
Alignment:
Q  294 gttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    ||||||||| |||||||||||||||||| |||||||||||| ||||||    
T  45170872 gttttaaaagttttaagttggtccaaaacgttactcacgttggaataa 45170825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 20870901 - 20870959
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||||||||||||| ||| ||||| |||||||| ||||||||| || ||||||    
T  20870901 tggtcccttacgttttaaaagtttcaagtttgtccaaaacgttactcacattggaataa 20870959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 45505133 - 45505191
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||| ||||||||||||||| ||| |||||||||||||| | |||||||||| ||||||    
T  45505133 tggttccttacgttttaaaagtttcaagttggtccaaaacgctactcacgttggaataa 45505191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 49984137 - 49984079
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||| ||||||||  ||| |||||||||||||| |||||||||||| ||||||    
T  49984137 tggtcccttatgttttaaagttttcaagttggtccaaaacgttactcacgttggaataa 49984079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 54702328 - 54702270
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||| ||||||| | |||||||||| | ||||||||||||||| |||||||||    
T  54702328 tggtcccttatgttttaacagttttaagttgattcaaaatgttactcacattagaataa 54702270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 341
Target Start/End: Complemental strand, 52485679 - 52485622
Alignment:
Q  284 ggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||| ||||| |||||||| ||| |||| |||||||||| ||||||||||||||||||    
T  52485679 ggtctcttacattttaaaagtttcaagtcggtccaaaatattactcacgttagaataa 52485622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 286 - 341
Target Start/End: Complemental strand, 17524539 - 17524484
Alignment:
Q  286 tcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    ||||||| ||||||||| ||||||||||| |||||| |||||| ||||| ||||||    
T  17524539 tcccttatgttttaaaagttttaagttggaccaaaacgttacttacgttggaataa 17524484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 2516528 - 2516470
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||||| |||||   ||| | ||||||||||||||||||||||||| ||||||    
T  2516528 tggtcccttacgatttaatggtttcatgttggtccaaaatgttactcacgttggaataa 2516470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 317
Target Start/End: Complemental strand, 4416845 - 4416811
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtcc 317  Q
    |||||||||| ||||||||||||||||||||||||    
T  4416845 tggtcccttatgttttaaaaattttaagttggtcc 4416811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 37724513 - 37724571
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    ||||||||||| |||||||| ||| || ||||||||||| |||||||| ||| ||||||    
T  37724513 tggtcccttacattttaaaattttcaaattggtccaaaacgttactcatgttggaataa 37724571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 43913475 - 43913524
Alignment:
Q  290 ttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaat 339  Q
    ||||||||||||| ||| |||||| ||||||| ||||||||| |||||||    
T  43913475 ttacgttttaaaagtttcaagttgatccaaaacgttactcacattagaat 43913524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 338
Target Start/End: Original strand, 40426110 - 40426154
Alignment:
Q  294 gttttaaaaattttaagttggtccaaaatgttactcacgttagaa 338  Q
    ||||||||| ||||||||||||||||||  |||||||| ||||||    
T  40426110 gttttaaaagttttaagttggtccaaaacattactcactttagaa 40426154  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 34518293 - 34518235
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  34518293 tggtcccttacgttttaaaaatttcaagttggtccaaaacgttactcacgttagaataa 34518235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 31872938 - 31872880
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||||||||||||| ||| |||||||||||||| |||||||||||| ||||||    
T  31872938 tggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacgttggaataa 31872880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 283 - 334
Target Start/End: Complemental strand, 143152 - 143101
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgtt 334  Q
    |||||||||||||||||||| ||| |||||||||||||| ||||||||||||    
T  143152 tggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacgtt 143101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 286 - 341
Target Start/End: Original strand, 37245714 - 37245769
Alignment:
Q  286 tcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||| |||||||| |||||||||||||||||| |||||||||||| ||||||    
T  37245714 tcccttacattttaaaagttttaagttggtccaaaacgttactcacgttggaataa 37245769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 33459969 - 33460027
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||| ||||||||||||| ||| |||||||||||||||||||| ||||||| |||||    
T  33459969 tggtcctttacgttttaaaagtttcaagttggtccaaaatgttacgcacgttataataa 33460027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 31872753 - 31872801
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcac 331  Q
    |||||||||||||||||||| ||| |||||||||||||| |||||||||    
T  31872753 tggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcac 31872801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 3073052 - 3073110
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    ||||| |||||||||||||| ||| ||||||||| ||||||||| ||||||| ||||||    
T  3073052 tggtctcttacgttttaaaagtttcaagttggtctaaaatgttattcacgttggaataa 3073110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 14420107 - 14420060
Alignment:
Q  294 gttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||| |||| |||||||||||||| |||||||||||| ||||||    
T  14420107 gttttaaagatttcaagttggtccaaaacgttactcacgttggaataa 14420060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 34518039 - 34518086
Alignment:
Q  284 ggtcccttacgttttaaaaattttaagttggtccaaaatgttactcac 331  Q
    |||||| |||||||||||| |||||||||||| ||||| |||||||||    
T  34518039 ggtcccctacgttttaaaagttttaagttggttcaaaacgttactcac 34518086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 3075259 - 3075201
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||| ||||||||||||| ||| ||||| |||||||| ||||||||| || ||||||    
T  3075259 tggtccattacgttttaaaagtttcaagtttgtccaaaacgttactcacattggaataa 3075201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 35795387 - 35795445
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||||||||||||  ||| ||| |||||||||| ||||| |||||| ||||||    
T  35795387 tggtcccttacgttttaaaggtttcaaggtggtccaaaacgttacccacgtttgaataa 35795445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 42604704 - 42604762
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||  ||||||||| ||| ||||||||| |||| |||||||||||| ||||||    
T  42604704 tggtccctttagttttaaaagtttcaagttggtctaaaacgttactcacgttggaataa 42604762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 18519391 - 18519439
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcac 331  Q
    |||||||||||||||||||||||| |||||| |  |||| |||||||||    
T  18519391 tggtcccttacgttttaaaaatttcaagttgatataaaacgttactcac 18519439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 36469873 - 36469815
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||    
T  36469873 tggtcccttacgttttaaaagtttcaagttggtccaaaatgttactcacgttggaataa 36469815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 34535762 - 34535812
Alignment:
Q  280 agctggtcccttacgttttaaaaattttaagttggtccaaaatgttactca 330  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  34535762 agctggtcccttacgttttaaaagttttaagttggtccaaaacgttactca 34535812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 321
Target Start/End: Original strand, 7460645 - 7460683
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaa 321  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  7460645 tggtcccttacgttttaaaaatttcaagttggtccaaaa 7460683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 48461866 - 48461924
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    ||||| |||||||||||||| | | |||||| ||||||| |||||||||||||||||||    
T  48461866 tggtctcttacgttttaaaagtatgaagttgatccaaaacgttactcacgttagaataa 48461924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 10017671 - 10017724
Alignment:
Q  288 ccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    ||||| ||||||||| ||||||||| |||||||||||||||||  |||||||||    
T  10017671 ccttatgttttaaaagttttaagttagtccaaaatgttactcaatttagaataa 10017724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 333
Target Start/End: Complemental strand, 24188237 - 24188187
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgt 333  Q
    |||||||||| ||||||| | ||| |||||||| |||||||||||||||||    
T  24188237 tggtcccttatgttttaagagtttcaagttggttcaaaatgttactcacgt 24188187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 6376692 - 6376640
Alignment:
Q  289 cttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||||||  ||||||||| |||||||| |||| |||||||| |||||    
T  6376692 cttacgttttaaagtttttaagttagtccaaaacgttattcacgttaaaataa 6376640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 22566377 - 22566426
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgtt 334  Q
    |||||||||||||||||||| |||   |||||||||||| ||||||||||||    
T  22566377 tggtcccttacgttttaaaagtttc--gttggtccaaaacgttactcacgtt 22566426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 286 - 341
Target Start/End: Original strand, 62803 - 62858
Alignment:
Q  286 tcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||    
T  62803 tcccttacgttttaaaagttttaagttggtccaaaacgttactcacgttggaataa 62858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 63062 - 63004
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    ||||||||||| |||||||| ||| | |||||||||||| ||||||||| || ||||||    
T  63062 tggtcccttacattttaaaagtttcaggttggtccaaaacgttactcactttggaataa 63004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 283 - 334
Target Start/End: Complemental strand, 18429662 - 18429611
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgtt 334  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  18429662 tggtcccttacgttttaaaagttttaagttggtccaaaacgttactcacgtt 18429611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 16049812 - 16049760
Alignment:
Q  289 cttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||    
T  16049812 cttacgttttaaaagtttcaagttggtccaaaatgttactcacgttggaataa 16049760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 283 - 334
Target Start/End: Complemental strand, 34439562 - 34439511
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgtt 334  Q
    |||||||||||||||||||| ||| |||||||||||||| ||||||||||||    
T  34439562 tggtcccttacgttttaaaagtttaaagttggtccaaaacgttactcacgtt 34439511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 18429487 - 18429545
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    ||||||||||  |||||||| ||| ||||||||||||||| ||||||||||||||||||    
T  18429487 tggtcccttatattttaaaagtttcaagttggtccaaaatattactcacgttagaataa 18429545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 34687828 - 34687886
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||| ||||||||| ||| |||||||||||||| ||||||||| |||||||||    
T  34687828 tggtcccttatgttttaaaagtttcaagttggtccaaaacgttactcactttagaataa 34687886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 16049554 - 16049612
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||| ||| || ||||||    
T  16049554 tggtccctttcgttttaaaaatttcaagttggtccaaaacgttacccacattggaataa 16049612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 4623143 - 4623191
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcac 331  Q
    ||||| |||||||||||||  ||| ||||||||||||||||||||||||    
T  4623143 tggtctcttacgttttaaaggtttcaagttggtccaaaatgttactcac 4623191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 7644856 - 7644900
Alignment:
Q  286 tcccttacgttttaaaaattttaagttggtccaaaatgttactca 330  Q
    |||||||||||||||||||||||||||||||| |||  |||||||    
T  7644856 tcccttacgttttaaaaattttaagttggtccgaaacattactca 7644900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 9710290 - 9710338
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcac 331  Q
    ||||||||||| |||||||| ||| |||||||||||||| |||||||||    
T  9710290 tggtcccttacattttaaaagtttcaagttggtccaaaacgttactcac 9710338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 334
Target Start/End: Complemental strand, 7535592 - 7535541
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgtt 334  Q
    ||||||||||| ||||| |  |||||||||||||||||| ||||||||||||    
T  7535592 tggtcccttacattttacaggttttaagttggtccaaaacgttactcacgtt 7535541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 34439296 - 34439347
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgtt 334  Q
    ||||||||||||||||||||  || |||||||||||||| |||| |||||||    
T  34439296 tggtcccttacgttttaaaagattcaagttggtccaaaacgttattcacgtt 34439347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 21446057 - 21446115
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    ||||| |||||||||||||  ||| |||||| | ||||||||||||||| |||||||||    
T  21446057 tggtctcttacgttttaaaggtttcaagttgtttcaaaatgttactcacattagaataa 21446115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 7645119 - 7645071
Alignment:
Q  286 tcccttacgttttaaaaattttaagttggtccaaaatgttactcacgtt 334  Q
    |||||||| |||||||| ||| |||||| ||||||| ||||||||||||    
T  7645119 tcccttacattttaaaagtttcaagttgatccaaaacgttactcacgtt 7645071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 54341277 - 54341335
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||||||||||||| ||| |||||||||||||| |||||||||||| ||||||    
T  54341277 tggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacgttggaataa 54341335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 33419880 - 33419822
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||||||||||||| ||||||||||| | |||| |||||||||||| ||||||    
T  33419880 tggtcccttacgttttaaaagttttaagttggactaaaacgttactcacgttggaataa 33419822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 33419614 - 33419662
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcac 331  Q
    |||||||||||||||||||| ||| |||||||||||||| |||||||||    
T  33419614 tggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcac 33419662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 51388094 - 51388046
Alignment:
Q  286 tcccttacgttttaaaaattttaagttggtccaaaatgttactcacgtt 334  Q
    |||||||| |||||||| |||||| ||||||||||| ||||||||||||    
T  51388094 tcccttacattttaaaagttttaaattggtccaaaacgttactcacgtt 51388046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 330
Target Start/End: Complemental strand, 30548064 - 30548023
Alignment:
Q  289 cttacgttttaaaaattttaagttggtccaaaatgttactca 330  Q
    |||||||||||||| ||| |||||||||||||| ||||||||    
T  30548064 cttacgttttaaaagtttcaagttggtccaaaacgttactca 30548023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 13490248 - 13490306
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    ||||| |||||||||||||| |||||||||||||||||| |||||||||||| ||||||    
T  13490248 tggtctcttacgttttaaaagttttaagttggtccaaaacgttactcacgttggaataa 13490306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 29526932 - 29526874
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||||||||||||| ||| |||||||||||||| |||||||||||| ||||||    
T  29526932 tggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcacgttggaataa 29526874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 44995398 - 44995340
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||||||||||||| | | |||||||||||||| |||||||||||| ||||||    
T  44995398 tggtcccttacgttttaaaagtatcaagttggtccaaaacgttactcacgttggaataa 44995340  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 32622520 - 32622469
Alignment:
Q  290 ttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||| |||||| |||||||||||||||||| |||||||||||| ||||||    
T  32622520 ttacgtattaaaagttttaagttggtccaaaacgttactcacgttggaataa 32622469  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 1353170 - 1353112
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    ||||| |||| ||||||||| ||| |||||||||||||||||||||||  |||||||||    
T  1353170 tggtctcttatgttttaaaagtttcaagttggtccaaaatgttactcatcttagaataa 1353112  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 27956799 - 27956857
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||||||||||||| ||| ||||||||||||||  |||| |||||| ||||||    
T  27956799 tggtcccttacgttttaaaagtttcaagttggtccaaaacattacccacgttggaataa 27956857  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 1352906 - 1352957
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgtt 334  Q
    ||||| ||||| |||||||| ||||||||||||| ||||||||| |||||||    
T  1352906 tggtctcttacattttaaaagttttaagttggtctaaaatgttattcacgtt 1352957  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 326
Target Start/End: Original strand, 14473551 - 14473594
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgtta 326  Q
    |||||||||| ||||||||| ||||||||| |||||||||||||    
T  14473551 tggtcccttatgttttaaaagttttaagtttgtccaaaatgtta 14473594  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 3217359 - 3217417
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||| ||| ||||||||| ||| ||||||||| |||| |||||||||||| ||||||    
T  3217359 tggtccattatgttttaaaattttcaagttggtctaaaacgttactcacgttggaataa 3217417  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 6795510 - 6795452
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||| ||||||||||| ||| |||||||| |||||||||||| || ||| |||||    
T  6795510 tggtccctaacgttttaaaagtttaaagttggttcaaaatgttactaacattataataa 6795452  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 13490511 - 13490454
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||||| ||||||| ||| |||||||||| ||||||||||||| || ||||||    
T  13490511 tggtcccttacgctttaaaagtttcaagttggtcc-aaatgttactcacattggaataa 13490454  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 15988588 - 15988530
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    ||||||||||  |||||||| ||||||||||||||||||  |||||||| || ||||||    
T  15988588 tggtcccttatattttaaaagttttaagttggtccaaaacattactcacattggaataa 15988530  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 29526669 - 29526714
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttact 328  Q
    ||||| |||||||||||||| ||| |||||||||||||| ||||||    
T  29526669 tggtctcttacgttttaaaagtttcaagttggtccaaaacgttact 29526714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 330
Target Start/End: Original strand, 32644048 - 32644089
Alignment:
Q  289 cttacgttttaaaaattttaagttggtccaaaatgttactca 330  Q
    |||| ||||||||| ||||||||| |||||||||||||||||    
T  32644048 cttatgttttaaaagttttaagttagtccaaaatgttactca 32644089  T

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Target: scaffold0548 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 3370 - 3312
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||||||||||||| ||| |||||||||||||| ||||||||| || ||||||    
T  3370 tggtcccttacgttttaaaagtttcaagttggtccaaaacgttactcactttggaataa 3312  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 10567800 - 10567742
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||||||||||||||||||| ||| ||||||||||||||  ||||||||||| ||||||    
T  10567800 tggtcccttacgttttaaaagtttcaagttggtccaaaacattactcacgttggaataa 10567742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 22793635 - 22793588
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactca 330  Q
    |||||||||||||||||||| ||| ||||| |||||||||||||||||    
T  22793635 tggtcccttacgttttaaaagtttcaagtttgtccaaaatgttactca 22793588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 330
Target Start/End: Original strand, 28613240 - 28613287
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactca 330  Q
    |||||||||||||||||||| || ||||||||||||||| ||||||||    
T  28613240 tggtcccttacgttttaaaagttgtaagttggtccaaaacgttactca 28613287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 341
Target Start/End: Complemental strand, 17343210 - 17343165
Alignment:
Q  296 tttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    ||||||| ||| |||||||||||||||||||||||| |||||||||    
T  17343210 tttaaaagtttcaagttggtccaaaatgttactcaccttagaataa 17343165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 10567537 - 10567585
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcac 331  Q
    |||||||||||||||||||| ||| |||||||| ||||| |||||||||    
T  10567537 tggtcccttacgttttaaaagtttcaagttggttcaaaacgttactcac 10567585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 33992409 - 33992460
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgtt 334  Q
    |||||||||||||||||||| ||| |||||||| ||||| |||| |||||||    
T  33992409 tggtcccttacgttttaaaagtttcaagttggttcaaaacgttattcacgtt 33992460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 33992674 - 33992616
Alignment:
Q  283 tggtcccttacgttttaaaaattttaagttggtccaaaatgttactcacgttagaataa 341  Q
    |||| ||||||||||||||| |||||| ||||| ||||| |||||||| ||| ||||||    
T  33992674 tggttccttacgttttaaaagttttaaattggttcaaaacgttactcatgttggaataa 33992616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 9905 - 9865
Alignment:
Q  289 cttacgttttaaaaattttaagttggtccaaaatgttactc 329  Q
    |||||||||||||| |||||| ||||| |||||||||||||    
T  9905 cttacgttttaaaagttttaatttggtacaaaatgttactc 9865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 10548 - 10508
Alignment:
Q  289 cttacgttttaaaaattttaagttggtccaaaatgttactc 329  Q
    |||||||||||||| |||||| ||||| |||||||||||||    
T  10548 cttacgttttaaaagttttaatttggtacaaaatgttactc 10508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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