View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5015_low_22 (Length: 336)

Name: NF5015_low_22
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5015_low_22
NF5015_low_22
[»] chr6 (1 HSPs)
chr6 (225-314)||(33777278-33777367)
[»] chr4 (1 HSPs)
chr4 (33-113)||(7303802-7303882)
[»] chr3 (2 HSPs)
chr3 (34-113)||(50983484-50983563)
chr3 (34-113)||(51086618-51086697)


Alignment Details
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 225 - 314
Target Start/End: Original strand, 33777278 - 33777367
Alignment:
Q  225 gttttccacagttttcctcttgttcgagtcatgattaacactaaatatagacacctctcctaaccaaacttttatactccatttattttg 314  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||    
T  33777278 gttttccaccgttatcctcttgttcgagtcatgattaacactaaatatggacacctctcctaaccaaacttctatattccatttattttg 33777367  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 7303882 - 7303802
Alignment:
Q  33 atagctagtttccttattttctataacatttcaacatgtatcgaaactattctcataattgaaatgcattaagtttgttcc 113  Q
    ||||||| ||||| |||||||||||||||| |||||||||||||| ||||| | |||| |||||| ||||||| |||||||    
T  7303882 atagctaatttccgtattttctataacattccaacatgtatcgaatctattattataaatgaaattcattaagcttgttcc 7303802  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 113
Target Start/End: Original strand, 50983484 - 50983563
Alignment:
Q  34 tagctagtttccttattttctataacatttcaacatgtatcgaaactattctcataattgaaatgcattaagtttgttcc 113  Q
    |||||||||| | |||||||||||| ||||  |||||||| ||||| ||||| |||| |||||||||||||| |||||||    
T  50983484 tagctagttttcatattttctataaaatttttacatgtattgaaacgattcttataaatgaaatgcattaagcttgttcc 50983563  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 113
Target Start/End: Original strand, 51086618 - 51086697
Alignment:
Q  34 tagctagtttccttattttctataacatttcaacatgtatcgaaactattctcataattgaaatgcattaagtttgttcc 113  Q
    |||||||||| | |||||||||||| ||||  |||||||| ||||| ||||| |||| |||||||||||||| |||||||    
T  51086618 tagctagttttcatattttctataaaatttttacatgtattgaaacgattcttataaatgaaatgcattaagcttgttcc 51086697  T

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