View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5015_low_25 (Length: 321)
Name: NF5015_low_25
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015_low_25 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 386483 - 386183
Alignment:
| Q |
8 |
caaacacatcaagctctatttatctgccccataaaaactatgtaagtgataagagcatttacaaagtactttgcagcaccttcctccaattcataatcaa |
107 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||||| ||||| |||| ||| |||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386483 |
caaacacatcgagctcgatttatctgtcccataagaactaggtaattgagaagaacattgacaaagtactttgcagcaccttcctccaattcataatcaa |
386384 |
T |
|
| Q |
108 |
tactttgaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggactgtgaaaagtccacacataaacgagtgggccttatgctttgt |
207 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386383 |
tacttcgaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggcctgtgaaaagtccacacataaacgagtgggccttatgctttgt |
386284 |
T |
|
| Q |
208 |
tgcactaaggatagacatcaaatgcctctcattctcttcatcctgacacctaacaagatgcgctaaaatcgaagtgtaaagaatcaaatcaacttttgca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
386283 |
tgcactaaggatagacatcaaatgcctctcattctcttcatcctgacacctaacaagatgcgctaaaatcgaagtgtaaagaatgaaatcaacttttgca |
386184 |
T |
|
| Q |
308 |
g |
308 |
Q |
| |
|
| |
|
|
| T |
386183 |
g |
386183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 38729059 - 38729359
Alignment:
| Q |
8 |
caaacacatcaagctctatttatctgccccataaaaactatgtaagtgataagagcatttacaaagtactttgcagcaccttcctccaattcataatcaa |
107 |
Q |
| |
|
|||||||| | ||||| ||||||||| ||||||| ||||| ||| ||| |||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38729059 |
caaacacaccgagctcgatttatctgtcccataagaactagataattgagaagaacattgacaaagtactttgcagcaccttcctccaattcataatcaa |
38729158 |
T |
|
| Q |
108 |
tactttgaaagaattcccttacaaaagtcaacaccggttgtcccctctgttcggggactgtgaaaagtccacacataaacgagtgggccttatgctttgt |
207 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
38729159 |
tactttgaaagaattctcttacaaatgtcaacaccggctgtcccctctgttcggggcctgtgaatagtccacacataaacgagtgcgccttatgctttgt |
38729258 |
T |
|
| Q |
208 |
tgcactaaggatagacatcaaatgcctctcattctcttcatcctgacacctaacaagatgcgctaaaatcgaagtgtaaagaatcaaatcaacttttgca |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38729259 |
tgcactaaggatagacatcaaatgcctctcattctcttcatcctgacacctaacaagatgcgctaaaatcgaagtgtaaagtatcaaatcaacttttgca |
38729358 |
T |
|
| Q |
308 |
g |
308 |
Q |
| |
|
| |
|
|
| T |
38729359 |
g |
38729359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University