View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5015_low_26 (Length: 311)
Name: NF5015_low_26
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015_low_26 |
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| [»] scaffold0065 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 14206457 - 14206174
Alignment:
| Q |
17 |
aaatccatcagataaccttatccttctctgtcaccaaaatcaaaattgacaagaccaagatttcattaacattttccacaatcacttaatccactctcaa |
116 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14206457 |
aaatccatcagataaccttacccttctctgtcaccaaaatcaaaattgacaagaccaagatttcattaacatttttcacaatcacttaatccactctcaa |
14206358 |
T |
|
| Q |
117 |
tgaaaaaactcattcttttgtcagaaactcttgccccattcaaaatccagcacatcctcttaaaacttcaaaaccacacggttatttccctcaagttctt |
216 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14206357 |
tgaaaaaactcactcttttatcagaaactcttgccccattcaaaatccagcacatcctcttaaaacttaaaaaccacacggttatttccctcaagttctt |
14206258 |
T |
|
| Q |
217 |
caattggatccaaacccataactttaattctcacacccttcataccaattcaagaattttatcaacaaatcaacactactctct |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14206257 |
caattggatccaaacccgtaactttaattctcacacccttcatacccattcaagaattttatcaacaaatcaacactactctct |
14206174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 14214205 - 14213922
Alignment:
| Q |
17 |
aaatccatcagataaccttatccttctctgtcaccaaaatcaaaattgacaagaccaagatttcattaacattttccacaatcacttaatccactctcaa |
116 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14214205 |
aaatccatcagataaccttacccttctctgtcaccaaaatcaaaattgacaagaccaagatttcattaacatttttcacaatcacttaatccactctcaa |
14214106 |
T |
|
| Q |
117 |
tgaaaaaactcattcttttgtcagaaactcttgccccattcaaaatccagcacatcctcttaaaacttcaaaaccacacggttatttccctcaagttctt |
216 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14214105 |
tgaaaaaactcactcttttatcagaaactcttgccccattcaaaatccagcacatcctcttaaaacttaaaaaccacacggttatttccctcaagttctt |
14214006 |
T |
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| Q |
217 |
caattggatccaaacccataactttaattctcacacccttcataccaattcaagaattttatcaacaaatcaacactactctct |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14214005 |
caattggatccaaacccgtaactttaattctcacacccttcatacccattcaagaattttatcaacaaatcaacactactctct |
14213922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 52438954 - 52438671
Alignment:
| Q |
17 |
aaatccatcagataaccttatccttctctgtcaccaaaatcaaaattgacaagaccaagatttcattaacattttccacaatcacttaatccactctcaa |
116 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52438954 |
aaatccatcacataaccttatccttctctgtcaccaaaatcaaaattgacaagatcaagatttcattaacattttccacaatcacttaatccactctcaa |
52438855 |
T |
|
| Q |
117 |
tgaaaaaactcattcttttgtcagaaactcttgccccattcaaaatccagcacatcctcttaaaacttcaaaaccacacggttatttccctcaagttctt |
216 |
Q |
| |
|
|||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52438854 |
tgaaaaaactcactcttttatcaaaaactcttgccccattcaaaatccagcacatcctcttaaaacttcaaaaccacacggttatttccctcaagttctt |
52438755 |
T |
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| Q |
217 |
caattggatccaaacccataactttaattctcacacccttcataccaattcaagaattttatcaacaaatcaacactactctct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
52438754 |
caattggatccaaacccataactttaattctcacacccttcatacctattcaagaattttatcaacaaatcaacattactctct |
52438671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 35782 - 36068
Alignment:
| Q |
16 |
caaatccatcagataaccttatccttctctgtcaccaaaatcaaaattgacaagaccaagatttcattaacattttccacaatcacttaatccactctca |
115 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35782 |
caaatcaatcacataaccttatccttctctgtcaccaaaatcaaaattgacaagaccaagatttcattaacattttcgacaatcacttaatccactctca |
35881 |
T |
|
| Q |
116 |
atgaaaaaactcattcttttgtcagaaactcttgccccattcaaaatccagcacatcctcttaaaacttcaaaaccacacggttatttccctcaagttct |
215 |
Q |
| |
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|| |||||||||| |||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35882 |
ataaaaaaactcactcttttatcaaaaactcttgcctcattcaaaatccagcacatcctcttaaaacttcaaaaccacatggttatttccctcaagttct |
35981 |
T |
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| Q |
216 |
tcaattggatccaaacccataactttaattctcacacccttcataccaattcaagaattttatcaacaaatcaacactactctctgc |
302 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35982 |
tcaattgggtccaaacccataactttaattctcacacccttcatacccattcaagaattttatcaacaaatcaacactactctctgc |
36068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 64 - 267
Target Start/End: Original strand, 35534255 - 35534459
Alignment:
| Q |
64 |
gacaagaccaagatttcattaacattttccacaatcacttaatccactctcaatga-aaaaactcattcttttgtcagaaactcttgccccattcaaaat |
162 |
Q |
| |
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||||||||| ||||||||| ||||||||||||| |||||| |||||||||||||| ||||||||| || ||| || |||| | ||||||||||||| |
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| T |
35534255 |
gacaagacctagatttcatcaacattttccacagtcacttcatccactctcaatgggaaaaactcactcctttctctaaaaccttaaccccattcaaaat |
35534354 |
T |
|
| Q |
163 |
ccagcacatcctcttaaaacttcaaaaccacacggttatttccctcaagttcttcaattggatccaaacccataactttaattctcacacccttcatacc |
262 |
Q |
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||| ||||| ||||||||||| |||||| || | ||| | || ||||| |||||||||||| |||||||||||||| ||||||||| |||||||||||| |
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| T |
35534355 |
ccaacacattctcttaaaactccaaaacgacgccgttctatctctcaaattcttcaattgggtccaaacccataaccctaattctcatacccttcatacc |
35534454 |
T |
|
| Q |
263 |
aattc |
267 |
Q |
| |
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|||| |
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|
| T |
35534455 |
cattc |
35534459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 190
Target Start/End: Original strand, 4962513 - 4962626
Alignment:
| Q |
78 |
ttcattaacattttccacaatcacttaatccactctcaatg-aaaaaactcattcttttgtcagaaactcttgccccattcaaaatccagcacatcctct |
176 |
Q |
| |
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||||| |||||||||||||| |||||||||||||||||||| ||||||||| ||||| ||| |||| | ||||||||| ||| || ||||| ||| |
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| T |
4962513 |
ttcataaacattttccacaaacacttaatccactctcaatgtgaaaaactcactctttaatcaaaaaccttaaccccattcagaattcaacacattgtct |
4962612 |
T |
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| Q |
177 |
taaaacttcaaaac |
190 |
Q |
| |
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||||||| |||||| |
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| T |
4962613 |
taaaactccaaaac |
4962626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 299
Target Start/End: Complemental strand, 16262913 - 16262881
Alignment:
| Q |
267 |
caagaattttatcaacaaatcaacactactctc |
299 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
16262913 |
caagaattttatcaacaaatcaacactactctc |
16262881 |
T |
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