View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5015_low_27 (Length: 308)
Name: NF5015_low_27
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 23 - 294
Target Start/End: Complemental strand, 40944284 - 40944013
Alignment:
| Q |
23 |
agagggaccaaatctcctgaagctgtgattgtaccgcgaagtggtaaacatggagtgacgttgttgttaaggagatttgtgatggcttccaagatttcaa |
122 |
Q |
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| T |
40944284 |
agagggaccaaatctcctgaagctgtgattgtaccgcgaagtggtaaacatggagtgacgttgttgttaaggagattggtgatggcttccaagatttcaa |
40944185 |
T |
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| Q |
123 |
atctgattcctgaataaccttggaggagtgtgttgattctcactagcatggcagctcttgttgctgtgtgtggaagtgtgtggcttgactcagttccgtt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
40944184 |
atctgattcctgaataaccttggaggagtgtgttgattctcactagcatggcagctcttgttgctgtgtgtggaagtgtgtggcttgactcacttccttt |
40944085 |
T |
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| Q |
223 |
tccaaatattccagcattcaaaaatctgtaaaacaagcagaataagcatcagaaccatatattttcttctgt |
294 |
Q |
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| T |
40944084 |
tccaaatattccagcattcaaaaatctgaaaaacaagcagaataagcatcagaaccatttattttcttctgt |
40944013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 23 - 259
Target Start/End: Complemental strand, 40958249 - 40958013
Alignment:
| Q |
23 |
agagggaccaaatctcctgaagctgtgattgtaccgcgaagtggtaaacatggagtgacgttgttgttaaggagatttgtgatggcttccaagatttcaa |
122 |
Q |
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| T |
40958249 |
agagggaccaaatctcctgaagctgtgattgtaccgcgaagtggtaaacatggagtgacgttgttgttaaggagcttagtgatggcttccaagatttcaa |
40958150 |
T |
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| Q |
123 |
atctgattcctgaataaccttggaggagtgtgttgattctcactagcatggcagctcttgttgctgtgtgtggaagtgtgtggcttgactcagttccgtt |
222 |
Q |
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| T |
40958149 |
atctaattcctgaatagccttggaggagtgtgttgattctcactagcatggctgctcttgttgccgtgtgtggtagtgtgtgatttgactctgttccatt |
40958050 |
T |
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| Q |
223 |
tccaaatattccagcattcaaaaatctgtaaaacaag |
259 |
Q |
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| T |
40958049 |
tccgaatattcctgcattcaaaaacctggaaaacaag |
40958013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 41 - 246
Target Start/End: Original strand, 28185153 - 28185358
Alignment:
| Q |
41 |
gaagctgtgattgtaccgcgaagtggtaaacatggagtgacgttgttgttaaggagatttgtgatggcttccaagatttcaaatctgattcctgaataac |
140 |
Q |
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| T |
28185153 |
gaagctgtgattgtaccgcgaagtggtaaacatggggtaatattgttgttcaagagctttgtgatagcttccaagatttcaaatctaataccagaatacc |
28185252 |
T |
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| Q |
141 |
cttggaggagtgtgttgattctcactagcatggcagctcttgttgctgtgtgtggaagtgtgtggcttgactcagttccgtttccaaatattccagcatt |
240 |
Q |
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| T |
28185253 |
cttgaagaagagtgttgatcctcacaagcattgcagctcttgttgctgtatgtggtagtgtacaatttgattctgtaccattgccaaatattccggcatt |
28185352 |
T |
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| Q |
241 |
caaaaa |
246 |
Q |
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|||||| |
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| T |
28185353 |
caaaaa |
28185358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 42610605 - 42610688
Alignment:
| Q |
107 |
gcttccaagatttcaaatctgattcctgaataaccttggaggagtgtgttgattctcactagcatggcagctcttgttgctgtg |
190 |
Q |
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||||||| |||||||||||||||||||||||| ||||| || | |||||||||||| || | |||| | |||||||| |||||| |
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| T |
42610605 |
gcttccatgatttcaaatctgattcctgaatatccttgaagcaatgtgttgattctaaccaacatgcctgctcttgtggctgtg |
42610688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 251
Target Start/End: Complemental strand, 40548956 - 40548770
Alignment:
| Q |
65 |
ggtaaacatggagtgacgttgttgttaaggagatttgtgatggcttccaagatttcaaatctgattcctgaataaccttggaggagtgtgttgattctca |
164 |
Q |
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||||||||||| || | ||||| ||| || || ||||| |||||||| | |||||| ||||||||||||| || ||||| ||||||||||||||||| | |
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| T |
40548956 |
ggtaaacatggtgtaatgttgtggttgagaagttttgtaatggcttctagcatttcatatctgattcctgagtagccttgaaggagtgtgttgattctta |
40548857 |
T |
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| Q |
165 |
ctagcatggcagctcttgttgctgtgtgtggaagtgtgtggcttgactcagttccgtttccaaatattccagcattcaaaaatctgt |
251 |
Q |
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| T |
40548856 |
ctaacattgcagctcttgttgcattttgtggcaatgtatggcattgttctgttccattaccaaaaattccagcattcaaaaacctgt |
40548770 |
T |
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