View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5015_low_31 (Length: 252)
Name: NF5015_low_31
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015_low_31 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 25 - 252
Target Start/End: Original strand, 31088637 - 31088864
Alignment:
| Q |
25 |
tacaccaataatgcaccaacagctcctctataatatgcacttgtgattgctctgtacctctcttgacctgcagtgtcccatatttgtgccttcactgtct |
124 |
Q |
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| T |
31088637 |
tacaccaataatgcaccaacagctcctctgtaatatgcacttgtgattgctctgtacctctcttgacctgcagtgtcccatatttgtgcctttactgtct |
31088736 |
T |
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| Q |
125 |
tcccttccacctgtttcaaacatagcgcgtatatatggggatggaaattagctccttctcttttaatagtgcaaatcactaaaattgtaagagaagttta |
224 |
Q |
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| T |
31088737 |
tcccttccacctgtttcaaacatagcgcgtatatatggggatggaaattagctccttctcttttaatactgcaaatcactaaaattgtaagagaagttta |
31088836 |
T |
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| Q |
225 |
tgaagaaggtatttggattttaacagtt |
252 |
Q |
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| T |
31088837 |
tgaagaaggtatttggattttaacagtt |
31088864 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 4373086 - 4373132
Alignment:
| Q |
37 |
gcaccaacagctcctctataatatgcacttgtgattgctctgtacct |
83 |
Q |
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| T |
4373086 |
gcaccaacagctcctctataatatgcacttgtaattgctcggtacct |
4373132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 138
Target Start/End: Original strand, 24248456 - 24248557
Alignment:
| Q |
37 |
gcaccaacagctcctctataatatgcacttgtgattgctctgtacctctcttgacctgcagtgtcccatatttgtgccttcactgtcttcccttccacct |
136 |
Q |
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| T |
24248456 |
gcaccaacagctcctctgtaataggcactagtaatggcacggtaccgctcctgacctgctgtgtcccagatctgtgcctttacagtctttccctctacct |
24248555 |
T |
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| Q |
137 |
gt |
138 |
Q |
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|| |
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| T |
24248556 |
gt |
24248557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 30646860 - 30646913
Alignment:
| Q |
21 |
atcatacaccaataatgcaccaacagctcctctataatatgcacttgtgattgc |
74 |
Q |
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| T |
30646860 |
atcatacacaagcaatgcaccaacagctcctcggtaatatgcacttgtgattgc |
30646913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 11931278 - 11931334
Alignment:
| Q |
55 |
taatatgcacttgtgattgctctgtacctctcttgacctgcagtgtcccatatttgt |
111 |
Q |
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| T |
11931278 |
taatatgatcttgttattgatctgaacctttcttgacctgctgtgtcccatatttgt |
11931334 |
T |
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