View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5015_low_39 (Length: 244)
Name: NF5015_low_39
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 3047906 - 3048080
Alignment:
| Q |
53 |
gttttgacaaagcataattgcttgagttgagtatgtccttcttgtgttaggattcttaataatctaatttggacgcattcacgaagtaaatgaatccaat |
152 |
Q |
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| T |
3047906 |
gttttgacaaagcataattgcttgagttgagtatgtccttcttgtgttaggattcttaataatctaatttggacgcattcacgaagtaaatgaatccaat |
3048005 |
T |
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| Q |
153 |
ggttcagattgattcaaaccataaaattgtgttgctattactggtcactgtatgtctataaaacatcaatgaact |
227 |
Q |
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| T |
3048006 |
ggttcagattgattcaaaccataaaattgtgttgctattactggtcactgtatgtctataaaacatcaatgaact |
3048080 |
T |
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