View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5015_low_42 (Length: 229)

Name: NF5015_low_42
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5015_low_42
NF5015_low_42
[»] chr1 (9 HSPs)
chr1 (1-222)||(28326226-28326447)
chr1 (36-222)||(21159137-21159320)
chr1 (83-131)||(47569161-47569209)
chr1 (83-158)||(14508846-14508918)
chr1 (83-131)||(6326788-6326836)
chr1 (83-131)||(28239071-28239119)
chr1 (83-131)||(677215-677263)
chr1 (83-131)||(28231498-28231546)
chr1 (83-150)||(671027-671091)
[»] chr5 (1 HSPs)
chr5 (83-131)||(1717891-1717939)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 28326447 - 28326226
Alignment:
Q  1 ttaaatttaccgatgatacaatagccaaagattagatgatgatatgtgtgagaattaggtgagacattgttaccatgaagcttcatttcagaatataaat 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28326447 ttaaattgaccgatgatacaatagccaaagattagatgatgatatgtgtgagaattaggtgagacattgttaccatgaagcttcatttcagaatataaat 28326348  T
Q  101 cataagcttggtttataagtctatctttgcaagctagcctgaatatgattgtgttataacagcgcatgacagtaaaaccatcaagactttccgtgtcaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  28326347 cataagcttggtttataagtctatctttgcaagctagcctgaatatgattgtgttataacagcgcatgacagtaaaagcatgaagactttccgtgtcaat 28326248  T
Q  201 ctcaatctgtaaagcctttctc 222  Q
    ||||||||||||||||||||||    
T  28326247 ctcaatctgtaaagcctttctc 28326226  T

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Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 36 - 222
Target Start/End: Original strand, 21159137 - 21159320
Alignment:
Q  36 atgatgatatgtgtgagaattaggtgagacattgttaccatgaagcttcatttcagaatataaatcataagcttggtttataagtctatctttgcaagct 135  Q
    ||||||||| ||||  |||||||||||||| |||||| |||||||    |||||||||||||||||||| |||||||||||||||||||||||||| |||    
T  21159137 atgatgatacgtgtcggaattaggtgagacgttgttaacatgaaga---atttcagaatataaatcataggcttggtttataagtctatctttgcaggct 21159233  T
Q  136 agcctgaatatgattgtgttataacagcgcatgacagtaaaaccatcaagactttccgtgtcaatctcaatctgtaaagcctttctc 222  Q
    ||||||||||||| ||| |||||||||  | ||||||||||||||| |  | ||||| |||||||||||||||||||||||||||||    
T  21159234 agcctgaatatgactgtattataacagaacgtgacagtaaaaccataaccattttccctgtcaatctcaatctgtaaagcctttctc 21159320  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 47569209 - 47569161
Alignment:
Q  83 tcatttcagaatataaatcataagcttggtttataagtctatctttgca 131  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  47569209 tcatttcagaatataaatcataggcttggtttacaagtctatctttgca 47569161  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 14508846 - 14508918
Alignment:
Q  83 tcatttcagaatataaatcataagcttggtttataagtctatctttgcaagctagcctgaatatgattgtgttata 158  Q
    |||||||||||||||||||||| |||||||||| | |||||||||||||   ||| |||||||||||  |||||||    
T  14508846 tcatttcagaatataaatcataggcttggtttacacgtctatctttgca---tagtctgaatatgatattgttata 14508918  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 6326788 - 6326836
Alignment:
Q  83 tcatttcagaatataaatcataagcttggtttataagtctatctttgca 131  Q
    |||||||||||||||||||||| |||||||||  |||||||||||||||    
T  6326788 tcatttcagaatataaatcataggcttggtttgcaagtctatctttgca 6326836  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 28239119 - 28239071
Alignment:
Q  83 tcatttcagaatataaatcataagcttggtttataagtctatctttgca 131  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||||||    
T  28239119 tcatttcagaatacaaatcataggcttggtttacaagtctatctttgca 28239071  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 677263 - 677215
Alignment:
Q  83 tcatttcagaatataaatcataagcttggtttataagtctatctttgca 131  Q
    |||||||||||||||||||||| ||||| | || |||||||||||||||    
T  677263 tcatttcagaatataaatcataggcttgatgtacaagtctatctttgca 677215  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 28231546 - 28231498
Alignment:
Q  83 tcatttcagaatataaatcataagcttggtttataagtctatctttgca 131  Q
    |||||||||||||||| ||||| |||||||| | |||||||||||||||    
T  28231546 tcatttcagaatataattcataggcttggttaacaagtctatctttgca 28231498  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 671027 - 671091
Alignment:
Q  83 tcatttcagaatataaatcataagcttggtttataagtctatctttgcaagctagcctgaatatgatt 150  Q
    |||||||| |||||||| ||||  ||||||||| |||||||||||||||    |||||||||||||||    
T  671027 tcatttcaaaatataaaccatagccttggtttacaagtctatctttgca---cagcctgaatatgatt 671091  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 1717939 - 1717891
Alignment:
Q  83 tcatttcagaatataaatcataagcttggtttataagtctatctttgca 131  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||    
T  1717939 tcatttcagaatataaatcataggcttggtttacaagtctatctttgca 1717891  T

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