View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5015_low_43 (Length: 228)
Name: NF5015_low_43
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 3427832 - 3427613
Alignment:
| Q |
3 |
atccattttcacaaaaacaacaaaaatattctagacatagaaaattaccaagacgccaagtgatcagattgagtggtaataatagtaaccaatacaaccc |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
3427832 |
atccattttcacaaaaacaacaaaaatattctagacatagaaaattatcaagacgccaagtgatcacattgagtggtaataatagtaaccaaaacaaccc |
3427733 |
T |
|
| Q |
103 |
taaagaggaacaagaaccacaaaacattgttgtaggaaataggaggaatgttctaattggccttggaggactttgtggtactttcaccactaaccctttt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427732 |
taaagaggaacaagaaccacaaaacattgttgtaggaaataggaggaatgttctaattggccttggaggactttgtggtactttcaccactaaccctttt |
3427633 |
T |
|
| Q |
203 |
gccctagcttctccaatatc |
222 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
3427632 |
gccctagcttctccaatatc |
3427613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 3434023 - 3433804
Alignment:
| Q |
3 |
atccattttcacaaaaacaacaaaaatattctagacatagaaaattaccaagacgccaagtgatcagattgagtggtaataatagtaaccaatacaaccc |
102 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||| |
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|
| T |
3434023 |
atccattttcacaaaaacaacagaaatcttctaaacatagaatattaccaagacgccaagtgatcacattgagtggtaataatggtaaccaaaacaaccc |
3433924 |
T |
|
| Q |
103 |
taaagaggaacaagaaccacaaaacattgttgtaggaaataggaggaatgttctaattggccttggaggactttgtggtactttcaccactaaccctttt |
202 |
Q |
| |
|
|||||| ||| || ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
3433923 |
taaagaagaagaacaactacaaaacattgttgtaggaaataggaggaatgttctagttggccttggaggactttgtggtactttcaccgctaaccctttt |
3433824 |
T |
|
| Q |
203 |
gccctagcttctccaatatc |
222 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
3433823 |
gccctagcttctccaatatc |
3433804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 11896454 - 11896669
Alignment:
| Q |
7 |
attttcacaaaaacaacaaaaatattctagacatagaaaattaccaagacgccaagtgatcagattgagtggtaataatagtaaccaatacaaccctaaa |
106 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| ||||||||||| |
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|
| T |
11896454 |
attttcacaaaaacaacaaaaatcttctaaacatagaaaattaccaagacgccaagtgatcacattcagtggtaatattagtaaccaaaacaaccctaaa |
11896553 |
T |
|
| Q |
107 |
gaggaacaagaaccacaaaacattgttgtaggaaataggaggaatgttctaattggccttggaggactttgtggtactttcaccactaacccttttgccc |
206 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11896554 |
gaagaacaagaactacaaaacattgttgtaggaaataggagaaatgttctaattggccttggaggactttgtggtactttcaccactaacccttttgccc |
11896653 |
T |
|
| Q |
207 |
tagcttctccaatatc |
222 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
11896654 |
tagcttctccaatatc |
11896669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 7 - 222
Target Start/End: Original strand, 11911754 - 11911969
Alignment:
| Q |
7 |
attttcacaaaaacaacaaaaatattctagacatagaaaattaccaagacgccaagtgatcagattgagtggtaataatagtaaccaatacaaccctaaa |
106 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| ||||||||||| |
|
|
| T |
11911754 |
attttcacaaaaacaacaaaaatcttctaaacatagaaaattaccaagacgccaagtgatcacattcagtggtaatattagtaaccaaaacaaccctaaa |
11911853 |
T |
|
| Q |
107 |
gaggaacaagaaccacaaaacattgttgtaggaaataggaggaatgttctaattggccttggaggactttgtggtactttcaccactaacccttttgccc |
206 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11911854 |
gaagaacaagaactacaaaacattgttgtaggaaataggagaaatgttctaattggccttggaggactttgtggtactttcaccactaacccttttgccc |
11911953 |
T |
|
| Q |
207 |
tagcttctccaatatc |
222 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11911954 |
tagcttctccaatatc |
11911969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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