View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5015_low_5 (Length: 554)
Name: NF5015_low_5
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 471; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 18 - 547
Target Start/End: Original strand, 8459392 - 8459923
Alignment:
| Q |
18 |
gtttctttgatggagatttaaataaattatggttttgaatctatggtttgtagaccatgctacatctttcaacgagattatgtttatagtcatttgttgc |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8459392 |
gtttctttgatggagatttaaataaattatggttttgaatctatggtttgtagaccatgctacatctttcaacgagattatgtttgtagtcatttgttgc |
8459491 |
T |
|
| Q |
118 |
gttatttgaaagattaagaatggcatggtgttcaacaaccgtaaatgaattatctcgcagtgacttaacaacattcattcttatatagctcttttccttg |
217 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8459492 |
gttatctgaaagattaagaatggcatggtgttcaacaaccgtaaatgaattatcttgcagtgacttaacaacattcattcttatatagctcttttccttg |
8459591 |
T |
|
| Q |
218 |
aaggttctaggtactcctaccattcaaaaaccgacgtgtgaggccagttggattcctcctcctgaagacaacataaaagttaatatggacgacaactctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8459592 |
aaggttctaggtactcctaccattcaaaaaccgacgtgtgaggccagttgaattcctcctcctgaagacaacataaaagttaatatggacgacaactctt |
8459691 |
T |
|
| Q |
318 |
tcaacgatcatggaa---tcggctttggtggcatcttgcgcaacaacaatggaaactggttatttgggttcttgctctctaattccttatgcatcgaact |
414 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8459692 |
tcaacgatcatggaagatgtggctttggtggcatcttgcg-aacaacaatggaaactggttatttgggttcttgctctctaattccttatgcgtcgaact |
8459790 |
T |
|
| Q |
415 |
tcatacaattttaaatggtctcaaaattgctcaaactagacgattgagaaataatatcgttgaataagatttcactctaacagttggtttcacttctcat |
514 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8459791 |
tcatgcaattttaaatggtctcaaaattgctcaaactagacaattgagaaatattatcgttgaataagatttcactctaacagttggtttcacttctcat |
8459890 |
T |
|
| Q |
515 |
gcaacttctcaactccatccttatgttcttctc |
547 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
8459891 |
gcaacttctcaactccatccttatgttcttctc |
8459923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 8464077 - 8464229
Alignment:
| Q |
18 |
gtttctttgatggagatttaaataaattatggttttgaatctatggtttgtagaccatgctacatctttcaacgagattatgtttatagtcatttgttgc |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||| ||||| |||||||||||||||| |||||| |
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|
| T |
8464077 |
gtttctttgatggagatttaaataaattatggttttgaatccatggttttttgaccatgctacatcttttaacgatattatgtttatagtcacttgttgg |
8464176 |
T |
|
| Q |
118 |
gttatttgaaagattaagaatggcatggtgttcaacaaccgtaaatgaattatct |
172 |
Q |
| |
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||||| || | || ||||| ||||| ||||||| || ||||||||||||||| |
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|
| T |
8464177 |
gttatctg--gcactaggaatgacatggagttcaacgactgtaaatgaattatct |
8464229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 433 - 548
Target Start/End: Original strand, 8466079 - 8466194
Alignment:
| Q |
433 |
tctcaaaattgctcaaactagacgattgagaaataatatcgttgaataagatttcactctaacagttggtttcacttctcatgcaacttctcaactccat |
532 |
Q |
| |
|
|||||| ||||||||| || | |||| || |||| |||| || ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8466079 |
tctcaagattgctcaatctgaaagattcaggaatattatcattaaattagattccactctaacagttgatttcacttctcatgcaacttctcaactccat |
8466178 |
T |
|
| Q |
533 |
ccttatgttcttctca |
548 |
Q |
| |
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||||||| || ||||| |
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|
| T |
8466179 |
ccttatgctcctctca |
8466194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 386
Target Start/End: Original strand, 32513374 - 32513549
Alignment:
| Q |
214 |
cttgaaggttctaggtactcctaccattcaaaaaccgacgtgtgaggccagttggattcctcctcctgaagacaacataaaagttaatatggacgacaac |
313 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||| ||||||| | |||||||| || || |||||||| ||| ||||| ||| |||| | | | |
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|
| T |
32513374 |
cttgcaggtactaggtactcctaccattcaaaaaccgacatgtgaggttacttggattcatcttcttgaagacatcattaaagtgaatgtggatggaagc |
32513473 |
T |
|
| Q |
314 |
tctttcaacgatcatgga--atc-ggctttggtggcatcttgcgcaacaacaatggaaactggttatttgggttct |
386 |
Q |
| |
|
||||||||| | | || | ||| |||||||| | ||||||||| ||||||||||| ||| |||| ||||||||| |
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|
| T |
32513474 |
tctttcaacaaccctgaaagatcgggctttggggacatcttgcgtaacaacaatggcgactagttacttgggttct |
32513549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 384
Target Start/End: Original strand, 23051309 - 23051616
Alignment:
| Q |
79 |
acatctttcaacgagattatgtttatagtcatttgttgcgttatttgaaagattaagaatggcatggtgttcaacaaccgtaaatgaattatctcgcagt |
178 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |||||| ||||| ||| ||| | |||| | |||||||||| || |||||| |||||||| || | |
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|
| T |
23051309 |
acatcttccaacgggattatgtttatagtcacttgttgggttatctgatagactcgaaatgacttggtgttcaatgactctaaatggattatctcacatt |
23051408 |
T |
|
| Q |
179 |
gacttaacaacattcattcttatatagctcttttccttgaaggttctaggtactcctaccattcaaaaaccgacgtgtgaggccagttggattcctcctc |
278 |
Q |
| |
|
||||||| || ||||||||||||| | | |||||| | |||| || ||||||||| ||| |||||| || |||||||| | |||||| | ||||| |
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|
| T |
23051409 |
gacttaagaaaattcattcttatagatccattttcc-agcaggtccttaatactcctacaatttaaaaactgatgtgtgaggtctcttggatccatcctc |
23051507 |
T |
|
| Q |
279 |
ctgaagacaacataaaagttaatatggacgacaactctttcaacgatcatgga--atc-ggctttggtggcatcttgcgcaacaacaatggaaactggtt |
375 |
Q |
| |
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| |||| | |||||||||||| |||| | | ||||||||| ||| |||| ||| |||||| |||||| ||||||||||||||||| |||||| |
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| T |
23051508 |
cgaaagataccataaaagttaaagtggatggaagttctttcaacaatcctggaagatcaagctttgatggcattttgcgcaacaacaatggtgtctggtt |
23051607 |
T |
|
| Q |
376 |
atttgggtt |
384 |
Q |
| |
|
| ||||||| |
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|
| T |
23051608 |
acttgggtt |
23051616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 142 - 364
Target Start/End: Original strand, 25316185 - 25316410
Alignment:
| Q |
142 |
atggtgttcaacaaccgtaaatgaattatctcgcagtgacttaacaacattcatt-cttatatagctcttttccttgaaggttctaggtactcctaccat |
240 |
Q |
| |
|
|||||||||||| | |||||| ||||||| | | || ||||| || ||||||| |||||||| | |||||| ||| | || |||||||||||| |||| |
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|
| T |
25316185 |
atggtgttcaacgatggtaaatagattatctggaaatgtcttaaaaaaattcatttcttatataacccttttc-ttgcatgtcctaggtactcctgccat |
25316283 |
T |
|
| Q |
241 |
tcaaaaaccgacgtgtgaggccagttggattcctcctcctgaagacaacataaaagttaatatggacgacaactctttcaacgatcatggaa---tcggc |
337 |
Q |
| |
|
|||||||||| |||||| || ||||||| |||||| |||||||| || ||||||||| |||| | |||||||||| ||| ||||| | ||| |
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|
| T |
25316284 |
acaaaaaccgatgtgtgaaatcacttggatttctcctcttgaagacacaattaaagttaatgtggatataagctctttcaacaatcctggaaaattaggc |
25316383 |
T |
|
| Q |
338 |
tttggtggcatcttgcgcaacaacaat |
364 |
Q |
| |
|
||||| ||||||||| ||||||||||| |
|
|
| T |
25316384 |
tttgggggcatcttgggcaacaacaat |
25316410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 536
Target Start/End: Original strand, 25316465 - 25316593
Alignment:
| Q |
408 |
tcgaacttcatacaattttaaatggtctcaaaattgctcaaactagacgattgagaaataatatcgttgaataagatttcactctaacagttggtttcac |
507 |
Q |
| |
|
|||||||| || || |||||||| ||||| | |||||| || ||| | ||| ||||||| ||||||||||| | ||| || | || ||||| ||| | |
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|
| T |
25316465 |
tcgaactttatgcagttttaaatagtctcgagattgctaaagctaaagaattaagaaatattatcgttgaatcatattccattttagtagttgattttcc |
25316564 |
T |
|
| Q |
508 |
ttctcatgcaacttctcaactccatcctt |
536 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |
|
|
| T |
25316565 |
ttctcatggaacttctcaaccccatcctt |
25316593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 226 - 322
Target Start/End: Complemental strand, 52729422 - 52729327
Alignment:
| Q |
226 |
aggtactcctaccattcaaaaaccgacgtgtgaggccagttggattcctcctcctgaagacaacataaaagttaatatggacgacaactctttcaac |
322 |
Q |
| |
|
|||||||| |||||| ||||||| || |||||| |||| |||||||||||||||||||| || ||| |||||||| |||| | ||||||||||||| |
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|
| T |
52729422 |
aggtactcttaccatccaaaaactgatgtgtgaagccacttggattcctcctcctgaaggcaccat-taagttaatgtggatgtcaactctttcaac |
52729327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 41616852 - 41616799
Alignment:
| Q |
61 |
tggtttgtagaccatgctacatctttcaacgagattatgtttatagtcatttgt |
114 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||| |||||||||||||||||| |||| |
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|
| T |
41616852 |
tggtctgtagaccatgttacatatttcaactagattatgtttatagtcacttgt |
41616799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 539
Target Start/End: Original strand, 24746506 - 24746578
Alignment:
| Q |
467 |
aatatcgttgaataagatttcactctaacagttggtttcacttctcatgcaacttctcaactccatccttatg |
539 |
Q |
| |
|
|||||| |||||| ||||||| ||||| |||| ||||||||||| || |||||||||||| |||||||||| |
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|
| T |
24746506 |
aatatcattgaatcagatttccgtctaatagtttatttcacttctcgtggaacttctcaacttcatccttatg |
24746578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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