View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5015_low_6 (Length: 471)
Name: NF5015_low_6
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 458
Target Start/End: Original strand, 38728352 - 38728798
Alignment:
| Q |
16 |
aatatcaccagcagagaaaaccttgatttgacatgtatgaatacactaatcattttgtaaa-------agaaaatcacataattgtgacagcggatatga |
108 |
Q |
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| T |
38728352 |
aatatcaccaggagagaaaaccgtgatttgacatatatgaataccctaatcagtttgtcaagataataagaaaa--acctaatcatgacaacggatatga |
38728449 |
T |
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| Q |
109 |
gcttttatgcactactcagcagcttttgtgggaaaaagaatataaatctaaaaagatcttattccaaattcttaaatagtacatatctattatgatatag |
208 |
Q |
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| T |
38728450 |
gcttttatgcattactccacagcttttgagggaaaaagaatataaatcttgaaagattttattccaaattcttagacagtacatatctgttatggtataa |
38728549 |
T |
|
| Q |
209 |
ccttcctaaacatccaaagagtgtgcacctcaaacacctattagatattaagactgtgtttacattgcccttcccgcaattagaggtttaggaggtgata |
308 |
Q |
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| T |
38728550 |
ttttcccaaacatatgaagagcgtacacctcaaa-acctattagatattaagcctgtgtttacattgccctgcctgcaattagaggtttaggaggggata |
38728648 |
T |
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| Q |
309 |
gagatctgatttcgggtgcagaattggggaaaagtatgttcagcttgtgcatcaggatatcagccctagatggaatttcattcagaagaaactgttgaac |
408 |
Q |
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| T |
38728649 |
gagatctgatttcgggtgcagaattggggaaaagtatgttcagcttgtgcatcaggatatcagccctagatggaatttcattcagaagaaactgctgaac |
38728748 |
T |
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| Q |
409 |
tatcggtttcttaaaccactccatgacagaatctcctggtgctctaagaa |
458 |
Q |
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| T |
38728749 |
tattggtttcttaaaccactccatgacagaatctcccggcgccctaagaa |
38728798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 9e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 320 - 458
Target Start/End: Complemental strand, 386882 - 386744
Alignment:
| Q |
320 |
tcgggtgcagaattggggaaaagtatgttcagcttgtgcatcaggatatcagccctagatggaatttcattcagaagaaactgttgaactatcggtttct |
419 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
386882 |
tcgggtgcagaattgggaaaaagtatgttcagcttgtgcatcaggatatcagccctagatggaatttcattcagaagaaactgctgaactatcggtttct |
386783 |
T |
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| Q |
420 |
taaaccactccatgacagaatctcctggtgctctaagaa |
458 |
Q |
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| T |
386782 |
taaaccactccatgacagaatctcctggtgctctaagaa |
386744 |
T |
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