View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5015_low_9 (Length: 443)
Name: NF5015_low_9
Description: NF5015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5015_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 7 - 428
Target Start/End: Original strand, 10223719 - 10224140
Alignment:
| Q |
7 |
gcaacacagacaccacttcaacaacctctcctccttccaaccaccaacctcaccttcttcgtttacccctccgtcgtaaccccaaacccaaaaacctctc |
106 |
Q |
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| T |
10223719 |
gcaacgcagacaccacttcaacaacctctcctccttccaaccaccaacctcaccttcttcgtttacccctccgtcgtaaccccaaacccaaaaacctctc |
10223818 |
T |
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| Q |
107 |
tctcattcacccttcttcacaacctattacccctccaaagaagagcaagcgaagaagaaaatgtgattcaacttcacacatcttacccttaatggatgct |
206 |
Q |
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| T |
10223819 |
tctcattcacccttcttcacaacctattactcctccaaagaagagcaagcgaagaagaaaatgtgatacaacttcacacatcttacccttaatggatgct |
10223918 |
T |
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| Q |
207 |
cttcactttcccataaccattgatatttacacctcattggtcaaagaatgtactctttccaccgacccagaaactgctattgagttgcatacacaaatca |
306 |
Q |
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| T |
10223919 |
cttcactttcccataaccattgatatttacacctcattggtcaaagaatgtactctttccaccgacccagaaactgctattgagttgcatacacaaatca |
10224018 |
T |
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| Q |
307 |
taactagaggcatcgaactgccattgacattgctcaatcggattctgattatgtttgtttcatgcggtttattggagaatgcacgccgtgtgtttgatgt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10224019 |
taactagaggcatcgaactgccattgacattgctcaatcggattctgattatgtttgtttcatgcggtttattggagaatgcacgccgagtgtttgatgt |
10224118 |
T |
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| Q |
407 |
aatgtctgtgagggattttcat |
428 |
Q |
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| T |
10224119 |
aatgtctgtgagggattttcat |
10224140 |
T |
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