View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5016-Insertion-2 (Length: 653)
Name: NF5016-Insertion-2
Description: NF5016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5016-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 321 - 652
Target Start/End: Complemental strand, 24349356 - 24349025
Alignment:
| Q |
321 |
ttcgggttattttctcaacaaggatgctataggatcaatatgtgcattcgggacgagaataatgaatttatgtgcgccaaaacaatattggtaaatgcaa |
420 |
Q |
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| T |
24349356 |
ttcgagttatttcctcaacaaggatgctataggatcaatatgtgcattcgggacgagaataatgaatttatgtgcgccaaaacaatattggtaaatgcaa |
24349257 |
T |
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| Q |
421 |
atagaactcctcaagaagcgaaagcagtctgtttaccggacgtgctaaattagttacatgagatggatgtttacagggttaccattgaactagaatgtaa |
520 |
Q |
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| T |
24349256 |
atagaactcctcaagaagcgaaagcagtctgtttaccggacgtgctaaaatagttacatgagatggatgtttacagggttaccattgaactagaatgtaa |
24349157 |
T |
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| Q |
521 |
accagtgacggatgaaatctatggagattatacttatgcaattgattttcgctctataagaaacccgtcaacttttaaatcaaaactataagattagttt |
620 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24349156 |
accaatggcggatgaaatctatggagattatacttatgcaattgactttcgctctataagaaacccgttaacttttaaatcaaaactataagattagttt |
24349057 |
T |
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| Q |
621 |
ttactagaagaaatttttaatcaaatacatcg |
652 |
Q |
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|||| |||||||| |||||||||||||||||| |
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| T |
24349056 |
ttaccagaagaaacttttaatcaaatacatcg |
24349025 |
T |
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