View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5016-Insertion-3 (Length: 157)

Name: NF5016-Insertion-3
Description: NF5016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5016-Insertion-3
NF5016-Insertion-3
[»] chr2 (8 HSPs)
chr2 (7-157)||(8578647-8578798)
chr2 (12-90)||(17565304-17565382)
chr2 (7-57)||(7612772-7612822)
chr2 (7-57)||(9321867-9321917)
chr2 (12-74)||(9329480-9329542)
chr2 (12-53)||(9060325-9060366)
chr2 (12-53)||(10348684-10348725)
chr2 (12-53)||(10372763-10372804)
[»] chr5 (1 HSPs)
chr5 (12-86)||(36225631-36225705)
[»] chr3 (2 HSPs)
chr3 (12-69)||(39428759-39428816)
chr3 (12-57)||(37463403-37463448)
[»] scaffold0667 (1 HSPs)
scaffold0667 (12-53)||(5340-5381)


Alignment Details
Target: chr2 (Bit Score: 112; Significance: 6e-57; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 6e-57
Query Start/End: Original strand, 7 - 157
Target Start/End: Complemental strand, 8578798 - 8578647
Alignment:
Q  7 agaaattgatcggaatcggagaagggattgtacgggtaagcgggagaggatatcgatgaacaattccgttggaacatcagccatgaaatcgaaactggtt 106  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8578798 agaaattgatcggaatcggagaagggattgtaccggtaagcgggagaggatatcgatgaacaattccgttggaacatcagccatggaatcgaaactggtt 8578699  T
Q  107 tagggttttcta-nnnnnnnnccttcatttctaattcattgtgaggtttgga 157  Q
    ||||||||||||         |||||||||||||||||||||||||||||||    
T  8578698 tagggttttctatttttttttccttcatttctaattcattgtgaggtttgga 8578647  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 17565382 - 17565304
Alignment:
Q  12 ttgatcggaatcggagaagggattgtacgggtaagcgggagaggatatcgatgaacaattccgttggaacatcagccat 90  Q
    ||||||||| |||||| ||||||||||| |||||||| |||||||| ||  |||| ||||||| ||||| |||||||||    
T  17565382 ttgatcggagtcggaggagggattgtactggtaagcgagagaggatttcagtgaataattccgatggaagatcagccat 17565304  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 7612772 - 7612822
Alignment:
Q  7 agaaattgatcggaatcggagaagggattgtacgggtaagcgggagaggat 57  Q
    ||||||||||||||||||||| |||| |||||| |||||||| ||||||||    
T  7612772 agaaattgatcggaatcggaggagggtttgtaccggtaagcgagagaggat 7612822  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 9321867 - 9321917
Alignment:
Q  7 agaaattgatcggaatcggagaagggattgtacgggtaagcgggagaggat 57  Q
    |||| ||||||||||| ||||||| |||| ||| |||||||||||||||||    
T  9321867 agaagttgatcggaattggagaagtgattttaccggtaagcgggagaggat 9321917  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 9329480 - 9329542
Alignment:
Q  12 ttgatcggaatcggagaagggattgtacgggtaagcgggagaggatatcgatgaacaattccg 74  Q
    |||| |||||||||||||| |||| ||| ||||||||||||||||| ||  | ||||||||||    
T  9329480 ttgaacggaatcggagaagtgattttaccggtaagcgggagaggatttccgttaacaattccg 9329542  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 9060366 - 9060325
Alignment:
Q  12 ttgatcggaatcggagaagggattgtacgggtaagcgggaga 53  Q
    ||||||||||||||||||| ||||| || |||||||||||||    
T  9060366 ttgatcggaatcggagaagtgattgaaccggtaagcgggaga 9060325  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 10348684 - 10348725
Alignment:
Q  12 ttgatcggaatcggagaagggattgtacgggtaagcgggaga 53  Q
    ||||||||||||||||||| |||| ||| |||||||||||||    
T  10348684 ttgatcggaatcggagaagtgattttaccggtaagcgggaga 10348725  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 10372763 - 10372804
Alignment:
Q  12 ttgatcggaatcggagaagggattgtacgggtaagcgggaga 53  Q
    ||||||||||||||||||| |||| ||| |||||||||||||    
T  10372763 ttgatcggaatcggagaagtgattttaccggtaagcgggaga 10372804  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 36225631 - 36225705
Alignment:
Q  12 ttgatcggaatcggagaagggattgtacgggtaagcgggagaggatatcgatgaacaattccgttggaacatcag 86  Q
    |||||||||||||||| |||||||| ||  |||||||||||||||| ||| ||||| | |||| |||||||||||    
T  36225631 ttgatcggaatcggaggagggattgcactagtaagcgggagaggatttcggtgaaccaatccgatggaacatcag 36225705  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 39428759 - 39428816
Alignment:
Q  12 ttgatcggaatcggagaagggattgtacgggtaagcgggagaggatatcgatgaacaa 69  Q
    ||||||||||| |||| |||||||| || ||||||||||||||||| ||| |||||||    
T  39428759 ttgatcggaattggaggagggattgcaccggtaagcgggagaggatttcggtgaacaa 39428816  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 37463403 - 37463448
Alignment:
Q  12 ttgatcggaatcggagaagggattgtacgggtaagcgggagaggat 57  Q
    ||||||||||||||||||| |||| ||| ||||| |||||||||||    
T  37463403 ttgatcggaatcggagaagtgattctactggtaaacgggagaggat 37463448  T

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Target: scaffold0667 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 5340 - 5381
Alignment:
Q  12 ttgatcggaatcggagaagggattgtacgggtaagcgggaga 53  Q
    ||||||||||||||||||| |||| ||| |||||||||||||    
T  5340 ttgatcggaatcggagaagtgattttaccggtaagcgggaga 5381  T

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