View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5016-Insertion-4 (Length: 601)

Name: NF5016-Insertion-4
Description: NF5016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5016-Insertion-4
NF5016-Insertion-4
[»] chr1 (12 HSPs)
chr1 (8-601)||(2403502-2404095)
chr1 (33-340)||(2789783-2790089)
chr1 (341-601)||(29833076-29833343)
chr1 (341-601)||(734579-734846)
chr1 (341-520)||(2409957-2410136)
chr1 (340-537)||(29833852-29834047)
chr1 (341-595)||(8933549-8933811)
chr1 (341-517)||(10909108-10909292)
chr1 (341-517)||(10911352-10911535)
chr1 (341-517)||(13011698-13011881)
chr1 (437-594)||(18353733-18353892)
chr1 (382-511)||(23253018-23253145)
[»] chr5 (13 HSPs)
chr5 (341-601)||(22600828-22601087)
chr5 (341-601)||(11849917-11850175)
chr5 (341-601)||(11852175-11852433)
chr5 (340-584)||(37215396-37215639)
chr5 (341-601)||(23164254-23164508)
chr5 (389-601)||(37207788-37207999)
chr5 (340-517)||(21743622-21743798)
chr5 (340-595)||(1779221-1779479)
chr5 (341-415)||(37207996-37208070)
chr5 (341-402)||(15469197-15469258)
chr5 (490-595)||(1779599-1779713)
chr5 (515-595)||(15469006-15469086)
chr5 (443-483)||(1779181-1779221)
[»] chr4 (13 HSPs)
chr4 (341-601)||(50855771-50856029)
chr4 (341-601)||(42468439-42468707)
chr4 (341-601)||(42470768-42471036)
chr4 (341-601)||(45162095-45162364)
chr4 (343-601)||(45166987-45167254)
chr4 (340-590)||(19429075-19429334)
chr4 (341-517)||(13774151-13774336)
chr4 (340-593)||(8739317-8739563)
chr4 (344-517)||(13776449-13776630)
chr4 (128-309)||(4244715-4244897)
chr4 (455-581)||(43179575-43179710)
chr4 (43-111)||(4245253-4245320)
chr4 (442-578)||(24908156-24908300)
[»] chr7 (21 HSPs)
chr7 (341-601)||(3932631-3932899)
chr7 (341-601)||(3934870-3935138)
chr7 (341-601)||(8733495-8733762)
chr7 (341-601)||(8414490-8414758)
chr7 (437-601)||(19786679-19786843)
chr7 (341-601)||(3052120-3052387)
chr7 (437-601)||(19788985-19789149)
chr7 (341-601)||(36464213-36464491)
chr7 (341-517)||(8731176-8731359)
chr7 (341-595)||(42678571-42678832)
chr7 (340-494)||(18395337-18395498)
chr7 (341-435)||(19789178-19789272)
chr7 (341-438)||(16496953-16497049)
chr7 (343-435)||(19786872-19786964)
chr7 (343-565)||(19093846-19094092)
chr7 (341-438)||(16535135-16535231)
chr7 (341-438)||(16630431-16630527)
chr7 (343-434)||(21769071-21769161)
chr7 (438-517)||(28610345-28610424)
chr7 (341-395)||(42680808-42680862)
chr7 (341-380)||(28610268-28610308)
[»] chr2 (12 HSPs)
chr2 (341-601)||(31486799-31487069)
chr2 (341-601)||(31489083-31489353)
chr2 (351-573)||(29801924-29802152)
chr2 (341-517)||(42277782-42277965)
chr2 (349-593)||(34576612-34576860)
chr2 (341-517)||(42275556-42275739)
chr2 (341-592)||(23859919-23860187)
chr2 (347-482)||(8995076-8995210)
chr2 (341-435)||(5164151-5164244)
chr2 (341-403)||(39816089-39816151)
chr2 (347-421)||(15730020-15730093)
chr2 (338-370)||(26341506-26341538)
[»] chr8 (6 HSPs)
chr8 (341-601)||(4876908-4877176)
chr8 (341-601)||(4879236-4879504)
chr8 (341-601)||(24519153-24519422)
chr8 (341-601)||(36379465-36379735)
chr8 (341-601)||(36377181-36377450)
chr8 (341-591)||(21268120-21268388)
[»] scaffold0050 (2 HSPs)
scaffold0050 (341-596)||(29261-29514)
scaffold0050 (340-596)||(31574-31830)
[»] scaffold0599 (1 HSPs)
scaffold0599 (341-554)||(1579-1801)
[»] chr3 (5 HSPs)
chr3 (341-517)||(4530835-4531020)
chr3 (341-511)||(4533138-4533317)
chr3 (443-596)||(18966221-18966374)
chr3 (517-592)||(1701104-1701179)
chr3 (518-574)||(8535522-8535578)
[»] scaffold0098 (1 HSPs)
scaffold0098 (341-420)||(3707-3785)
[»] scaffold0008 (1 HSPs)
scaffold0008 (341-440)||(88433-88531)
[»] chr6 (2 HSPs)
chr6 (343-487)||(20642217-20642359)
chr6 (452-517)||(21199308-21199373)
[»] scaffold1361 (1 HSPs)
scaffold1361 (341-435)||(46-140)
[»] scaffold0045 (2 HSPs)
scaffold0045 (345-402)||(64082-64137)
scaffold0045 (345-402)||(71414-71469)


Alignment Details
Target: chr1 (Bit Score: 594; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 8 - 601
Target Start/End: Original strand, 2403502 - 2404095
Alignment:
Q  8 agaaatacatcaaattagcccctcattaatgcctcatgccatcaaattagttgttacagtgacatcaaatcgggtccctaaatggatgaaactgatggga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2403502 agaaatacatcaaattagcccctcattaatgcctcatgccatcaaattagttgttacagtgacatcaaatcgggtccctaaatggatgaaactgatggga 2403601  T
Q  108 tttaactatccgtgaaggacaaggaccaatttgatatatttgattaatggaagactaatgtgattttgcgtatatcttttaagcactgaagtataaattt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2403602 tttaactatccgtgaaggacaaggaccaatttgatatatttgattaatggaagactaatgtgattttgcgtatatcttttaagcactgaagtataaattt 2403701  T
Q  208 aatcataaacaaggacagagactcacataacagagaataaaaagcatgagctttggaccacatttcgctataaactgatcaatgatgctaattgccatgt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2403702 aatcataaacaaggacagagactcacataacagagaataaaaagcatgagctttggaccacatttcgctataaactgatcaatgatgctaattgccatgt 2403801  T
Q  308 ccaaagaagaacttgaaatgacagcaaactttgtggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatatt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2403802 ccaaagaagaacttgaaatgacagcaaactttgtggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatatt 2403901  T
Q  408 atattatttgaatgtttctatgcttgatgatgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaata 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2403902 atattatttgaatgtttctatgcttgatgatgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaata 2404001  T
Q  508 tctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2404002 tctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 2404095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 33 - 340
Target Start/End: Complemental strand, 2790089 - 2789783
Alignment:
Q  33 ttaatgcctcatgccatcaaattagttgttacagtgacatcaaatcgggtccctaaatggatgaaactgatgggatttaactatccgtgaaggacaagga 132  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  2790089 ttaatgcctcgtgccatcaaattagttgttacagtgacatcaaatcag-tccctaaaaggatgaaactgatgggatttaattatccgtgaaggacaagga 2789991  T
Q  133 ccaatttgatatatttgattaatggaagactaatgtgattttgcgtatatcttttaagcactgaagtataaatttaatcataaacaaggacagagactca 232  Q
    ||||| |||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||    
T  2789990 ccaatctgatatatttaattaatggaagactaatttgattttgcgtatatctttgaagcactgaagtatgcatttaatcataaacaaggacagagactca 2789891  T
Q  233 cataacagagaataaaaagcatgagctttggaccacatttcgctataaactgatcaatgatgctaattgccatgtccaaagaagaacttgaaatgacagc 332  Q
    |||||||||||| ||||||||||  || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2789890 cataacagagaacaaaaagcatgtactctggaccacatttcactataaactgatcaatgatgctaattgccatgtccaaagaagaacttgaaatgccagc 2789791  T
Q  333 aaactttg 340  Q
    ||||||||    
T  2789790 aaactttg 2789783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 341 - 601
Target Start/End: Original strand, 29833076 - 29833343
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat-- 438  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||||||      
T  29833076 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaatgcttgatgattt 29833174  T
Q  439 ------gccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagag 532  Q
          |||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29833175 gaatgtgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagag 29833274  T
Q  533 atatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29833275 acatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 29833343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 341 - 601
Target Start/End: Original strand, 734579 - 734846
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatg- 439  Q
    ||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||| |||||  |||||||| ||||||  ||| ||||||||| ||      
T  734579 tggctcagggacaaaaggaaaggtagagaaaatagagaaacact--aatattctcaaggaaaag-ttatattacttgaatcattcaatgcttgattatct 734675  T
Q  440 ---------ccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 530  Q
             ||||||||||| ||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  734676 tgagtatgaccaaaacactaggtggtgagccttatttatactattctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctag 734775  T
Q  531 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  734776 agatatggatactctagtacataaacctagaaggatctagaaaagttaagacttccctagtgcttatttag 734846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 341 - 520
Target Start/End: Original strand, 2409957 - 2410136
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 440  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2409957 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctataatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 2410056  T
Q  441 caaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaag 520  Q
    |||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||    
T  2410057 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaattagcaatatctagaaacaaag 2410136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 340 - 537
Target Start/End: Complemental strand, 29834047 - 29833852
Alignment:
Q  340 gtggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatg 439  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||| | ||| ||||||||| ||     
T  29834047 gtggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatattacttgaaggattcaatgcttgatcat- 29833950  T
Q  440 ccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatg 537  Q
    ||||||||||| || |||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29833949 ccaaaacactaggtagtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatg 29833852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 341 - 595
Target Start/End: Original strand, 8933549 - 8933811
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 440  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||  |||||||| ||||||| ||| |||||||||  |      
T  8933549 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatattttcaaagaaaag-ttatattacttgaatgattcaatgcttgattcttg 8933647  T
Q  441 caaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaa---------acaaagaaaagtctaga 531  Q
    ||||||||| |||||||| ||||||||||||||||||||||||  ||| ||||||||||||||| |||||||||         ||||||||| | |||||    
T  8933648 caaaacacttagtggtgagccttatttatactactctaggaaggttctacattacaaactagaattatctagaaacattgattacaaagaaaggcctaga 8933747  T
Q  532 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgctt 595  Q
     | |||||||||||||| |||| | |||||||||||||||||  |||||| || ||||||||||    
T  8933748 aacatggatactctagttcatatgactagaaggatctagaaacattaagattttcctagtgctt 8933811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 341 - 517
Target Start/End: Complemental strand, 10909292 - 10909108
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttga-----t 435  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||  |||||||| ||||||| ||| ||||||||     |    
T  10909292 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaacgaaaagttatattacttgaatgattcaatgcttgattcttt 10909193  T
Q  436 ga---tgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 517  Q
    ||   |||| ||||||| |||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  10909192 gaatgtgcctaaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaaca 10909108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 341 - 517
Target Start/End: Complemental strand, 10911535 - 10911352
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttga-----t 435  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||     |    
T  10911535 tggctcagggacaaaaggaaaggtagataaaatagagaaacactctaatattctcaaagaaaa-gttatattacttgaatgattcaatgcttgattcttt 10911437  T
Q  436 ga---tgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 517  Q
    ||   |||| ||||||| |||||||| ||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  10911436 gaatgtgcctaaacacttagtggtgagccttatttatactactctaggaagggtctacattacaaactagaaatatctagaaaca 10911352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 341 - 517
Target Start/End: Complemental strand, 13011881 - 13011698
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttga-----t 435  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||| ||| ||||||||     |    
T  13011881 tggctcaggaacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattatttgaatgattcaatgcttgattcttt 13011783  T
Q  436 ga---tgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 517  Q
    ||   || | ||||||| |||||||| |||||||||||||||||||||||| |||| ||||| |||||| |||||||||||||||    
T  13011782 gaatgtgtctaaacacttagtggtgagccttatttatactactctaggaaggctctacattaaaaactaaaaatatctagaaaca 13011698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 437 - 594
Target Start/End: Complemental strand, 18353892 - 18353733
Alignment:
Q  437 atgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtct--agagat 534  Q
    |||||||||||||  | ||||| || || |||||||||||||| ||  |||  ||||||||| |||||| |||||||||||  ||  ||     | |||     
T  18353892 atgccaaaacacttggaggtgagccctaattatactactctagtaatgctccacattacaaaatagaaagatctagaaacattgattagaaataaaagac 18353793  T
Q  535 atggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgct 594  Q
    |||||||||||||| |||| | ||||||||||||||||||| ||||| || |||||||||    
T  18353792 atggatactctagttcatatgactagaaggatctagaaaagataagattttcctagtgct 18353733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 511
Target Start/End: Complemental strand, 23253145 - 23253018
Alignment:
Q  382 tctctaatattctcaaagaaaatattat-attatttgaatgtttctatgcttgatgatgccaaaacactaagtggtgaaccttatttatactactctagg 480  Q
    ||||||||||||||||||||| |  ||| |||  ||||||||||||||||||||   |||||||| |||  ||| ||| |||||| || || | |||||     
T  23253145 tctctaatattctcaaagaaagt--tatcattgattgaatgtttctatgcttgaat-tgccaaaatacttggtgatgagccttatatacaccagtctagt 23253049  T
Q  481 aagactctccattacaaactagaaatatcta 511  Q
    |||||| | ||||||||| ||||||||||||    
T  23253048 aagactttacattacaaaatagaaatatcta 23253018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 341 - 601
Target Start/End: Complemental strand, 22601087 - 22600828
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 440  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |    
T  22601087 tggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaatgcttgatgat-c 22600989  T
Q  441 caaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggat 540  Q
    |||||||||| ||||||| |||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22600988 caaaacactaggtggtgagccttatttatactactttagcaagactctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatggat 22600889  T
Q  541 actctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22600888 actctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 22600828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 341 - 601
Target Start/End: Original strand, 11849917 - 11850175
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 440  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||| ||| |||||||||||| |    
T  11849917 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatattatttgaatgattcaatgcttgatgat-c 11850014  T
Q  441 caaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggat 540  Q
    |||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11850015 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatggat 11850114  T
Q  541 actctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11850115 actcttgtacataagcctagaaggatctagaaaatttaagacttccctagtgcttatttag 11850175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 341 - 601
Target Start/End: Original strand, 11852175 - 11852433
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 440  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| |||||||| ||| |    
T  11852175 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaatgcttgacgat-c 11852272  T
Q  441 caaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggat 540  Q
    |||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  11852273 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaataaaagtctagagatatggat 11852372  T
Q  541 actctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||    
T  11852373 actctagtacataagcctagaaggtcctagaaaagttatgacttccctagtgcttatttag 11852433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 340 - 584
Target Start/End: Complemental strand, 37215639 - 37215396
Alignment:
Q  340 gtggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatg 439  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  37215639 gtggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaatgcttgatgatg 37215540  T
Q  440 ccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatgga 539  Q
    | ||||||||| ||||||| |||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||| |||||| |||||    
T  37215539 c-aaaacactatgtggtgagccttatttatactactctaggaaggctcttcattaccaactagaaatatctagaaacaaagaaaagtttagagacatgga 37215441  T
Q  540 tactctagtacataagcctagaaggatctagaaaagttaagactt 584  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  37215440 tactctagtatataagcctagaaggatctagaaaagttaagactt 37215396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 341 - 601
Target Start/End: Original strand, 23164254 - 23164508
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 440  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||    || |    
T  23164254 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaatgctt----at-c 23164347  T
Q  441 caaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggat 540  Q
    |||||||||| ||||||  |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23164348 caaaacactaggtggtgggccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatggat 23164447  T
Q  541 actctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23164448 actctagtacataagcctagaaggatctagaaaagttaagacttccctagtgtttatttag 23164508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 389 - 601
Target Start/End: Complemental strand, 37207999 - 37207788
Alignment:
Q  389 tattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgccaaaacactaagtggtgaaccttatttatactactctaggaagactct 488  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||| ||||    
T  37207999 tattctcaaagaaaagattatattatttgaatgcttcaatgcttgatgatgc-aaaacactaggtggtgagccttatttatactactctaggaaggctct 37207901  T
Q  489 ccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccct 588  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37207900 ccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagttaagacttccct 37207801  T
Q  589 agtgcttatttag 601  Q
    |||||||||||||    
T  37207800 agtgcttatttag 37207788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 340 - 517
Target Start/End: Complemental strand, 21743798 - 21743622
Alignment:
Q  340 gtggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatg 439  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||  ||| ||||||||  |||    
T  21743798 gtggcccagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaagt-ttatattatttgaattcttcaatgcttgagtatg 21743700  T
Q  440 ccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 517  Q
    || || ||||  |||||||| ||||||||||||||||||||||| |||| || ||||||||| ||||||||| |||||    
T  21743699 cctaaccacttggtggtgaatcttatttatactactctaggaaggctctacactacaaactaaaaatatctaaaaaca 21743622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 340 - 595
Target Start/End: Original strand, 1779221 - 1779479
Alignment:
Q  340 gtggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatg 439  Q
    ||||||||||||||||||||||     ||||||||||| ||| |||||||||||||||||||||  |||||||| ||||||| ||| || ||||||  |     
T  1779221 gtggctcagggacaaaaggaaa-----agaaaatagaggaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaatacttgattttt 1779314  T
Q  440 ccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaa---------acaaagaaaagtctag 530  Q
     |||||||||   |||||| |||||||||||| ||||||||||| |||| ||||||||||||||| |||||||||         ||||||||| | ||||    
T  1779315 acaaaacacttgttggtgagccttatttataccactctaggaaggctctacattacaaactagaattatctagaaacattgattacaaagaaaggcctag 1779414  T
Q  531 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgctt 595  Q
    | | |||||||||||||| |||| | |||||||||||||||||  |||||| ||  |||||||||    
T  1779415 aaacatggatactctagttcatatgactagaaggatctagaaacattaagatttttctagtgctt 1779479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 341 - 415
Target Start/End: Complemental strand, 37208070 - 37207996
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatt 415  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  37208070 tggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcgaagaaaagattatattatt 37207996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 341 - 402
Target Start/End: Complemental strand, 15469258 - 15469197
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaa 402  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  15469258 tggctcagggacaaaaggaaaggtaaaaaaaatagagaaactctctaatattctcaaagaaa 15469197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 595
Target Start/End: Original strand, 1779599 - 1779713
Alignment:
Q  490 cattacaaactagaaatatctagaaaca---------aagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaag 580  Q
    ||||||||||||||||||||||||||||         | |||| | ||||||||| ||||| |||||| |||| | |||||||||||||||||  |||||    
T  1779599 cattacaaactagaaatatctagaaacattgattacaaggaaaggcctagagatagggatattctagttcatatgactagaaggatctagaaacattaag 1779698  T
Q  581 acttccctagtgctt 595  Q
    | |||||||| ||||    
T  1779699 atttccctagcgctt 1779713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 515 - 595
Target Start/End: Complemental strand, 15469086 - 15469006
Alignment:
Q  515 acaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgctt 595  Q
    |||| ||||||| ||||||||| ||||| ||| | |||| | ||||| ||||||||||||||||| | || ||||||||||    
T  15469086 acaaggaaaagtttagagatatagatacactaattcatatgactagatggatctagaaaagttaatattttcctagtgctt 15469006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 483
Target Start/End: Original strand, 1779181 - 1779221
Alignment:
Q  443 aaacactaagtggtgaaccttatttatactactctaggaag 483  Q
    |||||||  ||||||| ||||||||||||||||||||||||    
T  1779181 aaacacttggtggtgagccttatttatactactctaggaag 1779221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 341 - 601
Target Start/End: Original strand, 50855771 - 50856029
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 440  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||  |||||||| ||||||| ||| |||||||||||| |    
T  50855771 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcgaggaaaag-ttatattacttgaatgattcaatgcttgatgat-c 50855868  T
Q  441 caaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggat 540  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  50855869 caaaacactaggtggtgaaccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatggat 50855968  T
Q  541 actctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50855969 actctggtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 50856029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 341 - 601
Target Start/End: Original strand, 42468439 - 42468707
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 440  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||||||||    
T  42468439 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatattacttgaatgcttcaatgcttgatgatgc 42468537  T
Q  441 ---------caaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctaga 531  Q
             ||||||||||  |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42468538 ttcagtatccaaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctaga 42468637  T
Q  532 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42468638 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 42468707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 341 - 601
Target Start/End: Original strand, 42470768 - 42471036
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 440  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||||||||    
T  42470768 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatattacttgaatgcttcaatgcttgatgatgc 42470866  T
Q  441 ---------caaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctaga 531  Q
             ||||||||||  |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42470867 ttcagtatccaaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctaga 42470966  T
Q  532 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42470967 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 42471036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 341 - 601
Target Start/End: Complemental strand, 45162364 - 45162095
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 440  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||| ||||||||||    
T  45162364 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaatgtttgatgatgc 45162266  T
Q  441 ----------caaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 530  Q
              |||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45162265 ttgagtatgccaaaacactaggtggtgagccttatttatactattctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 45162166  T
Q  531 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  45162165 agatatggatactctagtacataaacctagaaggatctagaaaagtaaagacttccctagtgcttatttag 45162095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 343 - 601
Target Start/End: Complemental strand, 45167254 - 45166987
Alignment:
Q  343 gctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc-- 440  Q
    ||||| |||||||||||||| ||  |||||||||||||| |||||||||||| ||| ||||  |||||||||||||||| ||| ||| ||||||||||      
T  45167254 gctcatggacaaaaggaaagttaccgaaaatagagaaacactctaatattcttaaaaaaaag-ttatattatttgaatgattcaatgtttgatgatgctt 45167156  T
Q  441 --------caaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagag 532  Q
            |||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45167155 gagtatgccaaaacactaggtggtgagccttatttatactattctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagag 45167056  T
Q  533 atatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  45167055 atatggatactctagtacataaacctagaaggatctagaaaagtaaagacttccctagtgcttatttag 45166987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 340 - 590
Target Start/End: Original strand, 19429075 - 19429334
Alignment:
Q  340 gtggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttga----- 434  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| ||||||| ||| ||||||||         
T  19429075 gtggctcacggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaagtatatattacttgaatgattcaatgcttgagtatc 19429174  T
Q  435 -tga---tgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 530  Q
     |||   |  | |||||||  ||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||    
T  19429175 ttgaatatatctaaacacttggtggtgagccttatttatactactctaggtaggctctccattacaaactagaaatatctataaacaaagaaaagtctag 19429274  T
Q  531 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctag 590  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  19429275 agatatgaatactctagtacataaaactagaaggatctagaaaagtcaagacttccctag 19429334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 341 - 517
Target Start/End: Complemental strand, 13774336 - 13774151
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatg---- 436  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||||        
T  13774336 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattacttgaatgattcaatgcttgatgatgc 13774238  T
Q  437 ------atgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 517  Q
          |||||||||||||| ||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  13774237 ttcagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaaca 13774151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 340 - 593
Target Start/End: Complemental strand, 8739563 - 8739317
Alignment:
Q  340 gtggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaa-atattatattatttgaatgtttctatgcttgatgat 438  Q
    |||||||||||| ||||||||||  |||||||||| |||||||||||||| ||||||| |||| |||||||  || ||||||  ||| ||| ||||  |     
T  8739563 gtggctcagggataaaaggaaagaaagagaaaataaagaaactctctaatgttctcaaggaaagatattat--tagttgaattcttcaatgattgagta- 8739467  T
Q  439 gccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatgg 538  Q
         ||||||  ||||| | |||| ||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8739466 -----aacacttggtggtaagccttgtttatacaactctaggaaggctctacattacaaactagaaatatctagaaacaaagaaaaatctagagatatgg 8739372  T
Q  539 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgc 593  Q
    || ||||||| |||| | |||||||||||||||||  |||||| |||||||||||    
T  8739371 atgctctagttcatatgactagaaggatctagaaacattaagatttccctagtgc 8739317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 344 - 517
Target Start/End: Complemental strand, 13776630 - 13776449
Alignment:
Q  344 ctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttga-----tga- 437  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||  |||||||| ||||||| ||| ||||||||     |||     
T  13776630 ctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaacgaaaagttatattacttgaatgattcaatgcttgattctttgaa 13776531  T
Q  438 --tgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 517  Q
      |||| ||||||| || ||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  13776530 tgtgcctaaacacttagcggtgagccttatttatactactctaggaaggctctgcattacaaactagaaatatctagaaaca 13776449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 128 - 309
Target Start/End: Complemental strand, 4244897 - 4244715
Alignment:
Q  128 aaggaccaatttgatatatttgattaatggaagactaatgtgattttgcgtatatcttttaagcactgaagtataaatttaatcataaacaagga-caga 226  Q
    ||||||||| ||||||| ||| ||||||||| ||||||||||||||  | |||||||| ||| |||||||||||| ||||||||||||| || ||  | |    
T  4244897 aaggaccaacttgatatctttaattaatggaggactaatgtgatttcacatatatcttctaaacactgaagtatacatttaatcataaataaagataata 4244798  T
Q  227 gactcacataacagagaataaaaagcatgagctttggaccacatttcgctataaactgatcaatgatgctaattgccatgtcc 309  Q
    ||||||||| |||||||||  |||||||   | ||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  4244797 gactcacatcacagagaattgaaagcatatcccttggaccacattttgctatgaactgatcaatgatgctaattgccatgtcc 4244715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 455 - 581
Target Start/End: Complemental strand, 43179710 - 43179575
Alignment:
Q  455 gtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca---------aagaaaagtctagagatatggatactct 545  Q
    |||| ||| |||||||||||||||| || ||||| |||||||||||||||||||||| |||||         ||||||||| |||||| |||||||||||    
T  43179710 gtgagcctaatttatactactctagaaaaactctgcattacaaactagaaatatctacaaacattgattacaaagaaaagtatagagacatggatactct 43179611  T
Q  546 agtacataagcctagaaggatctagaaaagttaaga 581  Q
    ||| |||| | ||||||||||| | |||||||||||    
T  43179610 agttcatatgactagaaggatccaaaaaagttaaga 43179575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 4245320 - 4245253
Alignment:
Q  43 atgccatcaaattagttgttacagtgacatcaaatcgggtccctaaatggatgaaactgatgggattta 111  Q
    |||||||||| |||||| ||||||||| |||| ||||  |||||||| |||||||||||||||||||||    
T  4245320 atgccatcaagttagttcttacagtgatatcatatcga-tccctaaaaggatgaaactgatgggattta 4245253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 442 - 578
Target Start/End: Original strand, 24908156 - 24908300
Alignment:
Q  442 aaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca--------aagaaaagtctagaga 533  Q
    ||||||||  |||||||||| |||||||||||||||||||||  ||  | ||||||| |||||| || ||||| ||        |||||||||||| |||    
T  24908156 aaaacacttggtggtgaaccctatttatactactctaggaaggttccacgttacaaagtagaaagatgtagaagcatttattacaagaaaagtctaaaga 24908255  T
Q  534 tatggatactctagtacataagcctagaaggatctagaaaagtta 578  Q
    |||||||||| |||| |||| | ||| || || ||||||||||||    
T  24908256 tatggatactttagttcatatgactaaaaagacctagaaaagtta 24908300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 341 - 601
Target Start/End: Complemental strand, 3932899 - 3932631
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 440  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||| ||||    
T  3932899 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaatgcttgattatgc 3932801  T
Q  441 ---------caaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctaga 531  Q
             ||||||||||  |||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3932800 ttgagtatccaaaacactagatggtgagccttatttatactattctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctaga 3932701  T
Q  532 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3932700 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 3932631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 341 - 601
Target Start/End: Complemental strand, 3935138 - 3934870
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 440  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||| ||||    
T  3935138 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaatgcttgattatgc 3935040  T
Q  441 ---------caaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctaga 531  Q
             ||||||||||  |||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3935039 ttgagtatccaaaacactagatggtgagccttatttatactattctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctaga 3934940  T
Q  532 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3934939 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 3934870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 341 - 601
Target Start/End: Original strand, 8733495 - 8733762
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat-- 438  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||      
T  8733495 tggctcagggacaaaagagaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaatgcttgatgattc 8733594  T
Q  439 --------gccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 530  Q
            |||||||||||| ||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  8733595 ttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctcctttacaaactagaaatatctagaaacaaagaaaagtctag 8733694  T
Q  531 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  8733695 agatatggatactctagtacataagcctagaaggatctagaaaagttaaga---ccctagtgcttatttag 8733762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 341 - 601
Target Start/End: Original strand, 8414490 - 8414758
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttc----------tatgc 430  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  |||||||||||||||| |||          |||||    
T  8414490 tggctcagggacaaaaggaaaggtagagaaaatagaaaaacactctaatattctcaaagaaaag-ttatattatttgaatgattcaatgcttgaatatgc 8414588  T
Q  431 ttgatgatgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 530  Q
    ||||  |||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  8414589 ttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaaaatctagaaacaaagaaaagtctag 8414688  T
Q  531 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    ||||||||||| | ||||| ||||  |||||| ||||||||||||| ||||||||||||||||||||||||    
T  8414689 agatatggatattttagtatataaaactagaa-gatctagaaaagtcaagacttccctagtgcttatttag 8414758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 437 - 601
Target Start/End: Complemental strand, 19786843 - 19786679
Alignment:
Q  437 atgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatat 536  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19786843 atgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatat 19786744  T
Q  537 ggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19786743 ggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 19786679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 341 - 601
Target Start/End: Complemental strand, 3052387 - 3052120
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 440  Q
    ||||| |||||||||||||| ||||||||||||| ||||||||| |  |||||||||||||| | |||||||||||||||| ||| ||||||||  || |    
T  3052387 tggctgagggacaaaaggaatggtagagaaaataaagaaactctat--tattctcaaagaaagt-ttatattatttgaatgcttcaatgcttgagtatac 3052291  T
Q  441 ----------caaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 530  Q
              |||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3052290 ttgagtatatcaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctag 3052191  T
Q  531 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||    
T  3052190 agatatggatattctagtacataaaactagaaggatctagaaaagttaagacttccctaatgcttatttag 3052120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 437 - 601
Target Start/End: Complemental strand, 19789149 - 19788985
Alignment:
Q  437 atgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatat 536  Q
    |||||||||||||| ||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19789149 atgccaaaacactaggtggtgagccttatttatactactctagtaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatat 19789050  T
Q  537 ggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19789049 ggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 19788985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 341 - 601
Target Start/End: Original strand, 36464213 - 36464491
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttga------ 434  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||          
T  36464213 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaatgcttgactatgc 36464311  T
Q  435 ----------tga---tgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaaga 521  Q
              |||   ||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  36464312 ttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaaga 36464411  T
Q  522 aaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    ||||||| |||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  36464412 aaagtctggagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttag 36464491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 341 - 517
Target Start/End: Original strand, 8731176 - 8731359
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgat----- 435  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| |||||||||         
T  8731176 tggctcagggacaaaaggaaaggtagataaaatagagaaacactctaatattctcaaagaaaa-gttatattacttgaatgattcaatgcttgattcttt 8731274  T
Q  436 ---gatgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 517  Q
         |||| ||||||| |||||||| |||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||    
T  8731275 aaatgtgcctaaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaattagaaatatctagaaaca 8731359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 341 - 595
Target Start/End: Original strand, 42678571 - 42678832
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 440  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||  |||||||| ||||||| ||| |||||||||  |      
T  42678571 tggctcagggacaaaaggaaaggtagagaaaataaagaaacactctaatattctcaaagaaaa-gttatattacttgaatgattcaatgcttgatcct-t 42678668  T
Q  441 caaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaa---------acaaagaaaagtctaga 531  Q
    |||||||||  ||||||| |||||||||||||||  | |||||  ||| ||||||||||||||| |||||||||         ||||||||| | |||||    
T  42678669 caaaacacttggtggtgagccttatttatactaccttgggaaggttctacattacaaactagaattatctagaaacattgattacaaagaaaggcctaga 42678768  T
Q  532 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgctt 595  Q
     | |||||||||||||  |||| | |||||||||||||||||  |||||| || ||||||||||    
T  42678769 aacatggatactctaggtcatatgactagaaggatctagaaacattaagattttcctagtgctt 42678832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 340 - 494
Target Start/End: Complemental strand, 18395498 - 18395337
Alignment:
Q  340 gtggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttga----- 434  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||         
T  18395498 gtggcttagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattacttgaatgattcaatgcttgactctt 18395400  T
Q  435 tga---tgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccatta 494  Q
    | |   || | ||||||| |||||||| |||||||||||||||||||||||| |||| |||||    
T  18395399 ttaatgtgtctaaacacttagtggtgagccttatttatactactctaggaaggctctacatta 18395337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 341 - 435
Target Start/End: Complemental strand, 19789272 - 19789178
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgat 435  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  |||||||| ||||||  ||| |||||||||    
T  19789272 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgat 19789178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 341 - 438
Target Start/End: Original strand, 16496953 - 16497049
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat 438  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||  |||||||| || |||| ||| ||||||||||||    
T  16496953 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattacttaaatgattcaatgcttgatgat 16497049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 343 - 435
Target Start/End: Complemental strand, 19786964 - 19786872
Alignment:
Q  343 gctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgat 435  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  |||||||| ||||||  ||| |||||||||    
T  19786964 gctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgat 19786872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 343 - 565
Target Start/End: Original strand, 19093846 - 19094092
Alignment:
Q  343 gctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaa----ata-ttatattatttgaatg--------tttctatg 429  Q
    |||||||| |||||||| ||||||||||||||||  ||||||||||||||||||||||||    ||| ||||||||||||||||        |||  ||     
T  19093846 gctcagggtcaaaaggagaggtagagaaaataga--aactctctaatattctcaaagaaagtttatatttatattatttgaatgtttgaatttttgaata 19093943  T
Q  430 cttgatgatgccaaaacactaagtggtgaaccttatttatactactctaggaag----actctccattacaaactagaaatatctagaa---------ac 516  Q
    |||||  |||||  ||||||  |||| ||||||||||||||||||||||| |||    ||||| |||||||||||||||||||||| ||         ||    
T  19093944 cttgagtatgcctgaacacttggtggcgaaccttatttatactactctagaaagacgtactctacattacaaactagaaatatctaaaaatatcgattac 19094043  T
Q  517 aaagaaaagtctagagatatggatactctagtacataagcctagaagga 565  Q
    ||||||||||||||||| ||||||||||||||  ||||| |||||||||    
T  19094044 aaagaaaagtctagagacatggatactctagtttataagtctagaagga 19094092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 341 - 438
Target Start/End: Original strand, 16535135 - 16535231
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat 438  Q
    |||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||  |||||||| || |||| ||| ||||||||||||    
T  16535135 tggctcggggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattacttaaatgattcaatgcttgatgat 16535231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 341 - 438
Target Start/End: Complemental strand, 16630527 - 16630431
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat 438  Q
    |||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||  |||||||| || |||| ||| ||||||||||||    
T  16630527 tggctcggggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattacttaaatgattcaatgcttgatgat 16630431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 343 - 434
Target Start/End: Original strand, 21769071 - 21769161
Alignment:
Q  343 gctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttga 434  Q
    |||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||| | |  ||||||||||||||||| ||||||||    
T  21769071 gctcagggatgaaaggaaaggtagagaaaatagagaaactctttaatattctcaaagaaagt-tgttattatttgaatgtttcaatgcttga 21769161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 438 - 517
Target Start/End: Original strand, 28610345 - 28610424
Alignment:
Q  438 tgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 517  Q
    |||| |||||||  ||||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||    
T  28610345 tgcctaaacacttggtggtgagccttatttatactactctagaaaggctctacattacaaactagaaatatctagaaaca 28610424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 341 - 395
Target Start/End: Complemental strand, 42680862 - 42680808
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctc 395  Q
    ||||| ||| |||||| |||||||||||||||||||||||| |||||||||||||    
T  42680862 tggctgaggaacaaaatgaaaggtagagaaaatagagaaacactctaatattctc 42680808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 380
Target Start/End: Original strand, 28610268 - 28610308
Alignment:
Q  341 tggctcagggacaaaaggaaagg-tagagaaaatagagaaa 380  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  28610268 tggctcagggacaaaaggaaaggttagagaaaataaagaaa 28610308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 175; Significance: 6e-94; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 341 - 601
Target Start/End: Complemental strand, 31487069 - 31486799
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat-- 438  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  |||||||| ||||||  ||| ||||||||| ||      
T  31487069 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattatct 31486970  T
Q  439 -------gccaaaacactaag-tggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 530  Q
           ||||||||||| || |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||    
T  31486969 tgagtatgccaaaacacttaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctggaaacaaagaaaagtccag 31486870  T
Q  531 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31486869 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 31486799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 341 - 601
Target Start/End: Complemental strand, 31489353 - 31489083
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat-- 438  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  |||||||| ||||||  ||| ||||||||| ||      
T  31489353 tggcttagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattatct 31489254  T
Q  439 -------gccaaaacactaag-tggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 530  Q
           ||||||||||| || |||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||| ||    
T  31489253 tgagtatgccaaaacacttaggtggtgagccttatttatactactttaggaaggctctccattacaaactagaaatatctggaaacaaagaaaagtccag 31489154  T
Q  531 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  31489153 agatatggatactctagtacataagcttagaaggatctagaaaagctaagacttccctagtgcttatttag 31489083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 351 - 573
Target Start/End: Complemental strand, 29802152 - 29801924
Alignment:
Q  351 acaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattat-att---at--ttgaatgtttctatgcttgatgatgccaaa 444  Q
    |||||| ||||||||||||||||||  ||||||||||||||||||||| || ||||||| |||   ||  ||||||  ||| ||||||||  ||||| ||    
T  29802152 acaaaatgaaaggtagagaaaatagtaaaactctctaatattctcaaaaaagatattattatttgaatgcttgaattcttcaatgcttgactatgcctaa 29802053  T
Q  445 acactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactc 544  Q
    |||||  ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||     
T  29802052 acacttggtggtgagccttatttatactactctaggaagactccccattacaaactagaaatatctacaaacaaagaaaagtctagagatatggatgcta 29801953  T
Q  545 tagtacataagcctagaaggatctagaaa 573  Q
    |||| |||| | |||||||||| ||||||    
T  29801952 tagttcatatgactagaaggatttagaaa 29801924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 341 - 517
Target Start/End: Original strand, 42277782 - 42277965
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttga-----t 435  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||     |    
T  42277782 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattacttgaatgattcaatgcttgattcttt 42277880  T
Q  436 ga---tgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 517  Q
    ||   |||| ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42277881 gaatgtgcctaaacacttagtggtgagccttatttatactactctaggaagactctacattacaaactagaaatatctagaaaca 42277965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 349 - 593
Target Start/End: Original strand, 34576612 - 34576860
Alignment:
Q  349 ggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgccaaaacac 448  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||     |||||||||||||| ||  || ||| |  ||||| ||||||    
T  34576612 ggacaaaaggtaaggtagagaaaatagagaaactctctaatattctcaaagaaag----atattatttgaatgcttgaattcttca--atgcctaaacac 34576705  T
Q  449 taagtggtgaaccttatttatactactct-aggaagactctccattacaaactagaaatatctagaaaca---------aagaaaagtctagagatatgg 538  Q
    |   |||||| |||||||||||||| ||| |||||| |||| ||||||||||||||||||||||||||||         |||||||||||||||| |||     
T  34576706 ttgatggtgagccttatttatactaatcttaggaaggctctacattacaaactagaaatatctagaaacattgattacaaagaaaagtctagagacatga 34576805  T
Q  539 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgc 593  Q
    |||||||||| |||| | ||||||||||||||||||||||||| ||| |||||||    
T  34576806 atactctagttcatatgactagaaggatctagaaaagttaagatttctctagtgc 34576860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 341 - 517
Target Start/End: Original strand, 42275556 - 42275739
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttga-----t 435  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| || |||||     |    
T  42275556 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattacttgaatgattcaatacttgattcttt 42275654  T
Q  436 ga---tgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 517  Q
    ||   |||| ||||||| |||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  42275655 gaatgtgcctaaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaaca 42275739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 341 - 592
Target Start/End: Complemental strand, 23860187 - 23859919
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaa-atattatattatttgaatgtttctatgcttga----- 434  Q
    ||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||| ||||  |||||||| |||||||| ||||||||         
T  23860187 tggctcagggacaaaaggaaaagcatagaaaatagagaaactctctaatattctcaaagaaagatat--tattatttaaatgtttcaatgcttgagtatc 23860090  T
Q  435 -tg---atgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaa---------acaaaga 521  Q
     ||   || |  |||||||  ||||||| |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||         |||||||    
T  23860089 ttgaatatacgtaaacacttggtggtgagccttatttatactactctaggaaggctctacattacaaactagaattatctagaaatattgattacaaaga 23859990  T
Q  522 aaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtg 592  Q
    || | ||||| | ||| |||||||||| |||||| ||||||||||||||||||| ||||| ||| ||||||    
T  23859989 aaggcctagaaacatgcatactctagttcataagactagaaggatctagaaaagctaagatttctctagtg 23859919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 347 - 482
Target Start/End: Original strand, 8995076 - 8995210
Alignment:
Q  347 agggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgccaaaac 446  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||| ||| ||||||||  ||  ||||||    
T  8995076 agggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaa-gttatattacttgaatgattcaatgcttgagtattacaaaac 8995174  T
Q  447 actaagtggtgaaccttatttatactactctaggaa 482  Q
    |||  |||| || |||||||||||||||||||||||    
T  8995175 acttggtggagagccttatttatactactctaggaa 8995210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 341 - 435
Target Start/End: Original strand, 5164151 - 5164244
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgat 435  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| |||||||||    
T  5164151 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattacttgaatgcttcaatgcttgat 5164244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 341 - 403
Target Start/End: Original strand, 39816089 - 39816151
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaa 403  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39816089 tggctcacggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaa 39816151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 347 - 421
Target Start/End: Complemental strand, 15730093 - 15730020
Alignment:
Q  347 agggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatg 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||| |||||||    
T  15730093 agggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaataaaa-gttatattacttgaatg 15730020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 338 - 370
Target Start/End: Original strand, 26341506 - 26341538
Alignment:
Q  338 ttgtggctcagggacaaaaggaaaggtagagaa 370  Q
    |||||||||| ||||||||||||||||||||||    
T  26341506 ttgtggctcaaggacaaaaggaaaggtagagaa 26341538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 341 - 601
Target Start/End: Complemental strand, 4877176 - 4876908
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat-- 438  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||  |||||||| ||||||  ||| ||||||||| ||      
T  4877176 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaggaaaag-ttatattacttgaatcattcaatgcttgattatct 4877078  T
Q  439 -------gccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctaga 531  Q
           | ||||||||||  |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4877077 tgagtatgtcaaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctaga 4876978  T
Q  532 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4876977 gatatggatactatagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 4876908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 341 - 601
Target Start/End: Complemental strand, 4879504 - 4879236
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat-- 438  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||  |||||||| ||||||  ||| ||||||||| ||      
T  4879504 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaggaaaag-ttatattacttgaatcattcaatgcttgattatct 4879406  T
Q  439 -------gccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctaga 531  Q
           | ||||||||||  |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4879405 tgagtatgtcaaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctaga 4879306  T
Q  532 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4879305 gatatggatactatagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 4879236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 341 - 601
Target Start/End: Original strand, 24519153 - 24519422
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 440  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||  |||||||| ||||||| ||| ||||||||| ||||    
T  24519153 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaag-ttatattacttgaatgattcaatgcttgattatgc 24519251  T
Q  441 ----------caaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 530  Q
              ||||||||||  |||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  24519252 ttcagtatgccaaaacactagatggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctag 24519351  T
Q  531 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24519352 agatatggatacttttgtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 24519422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 341 - 601
Target Start/End: Original strand, 36379465 - 36379735
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat-- 438  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  |||||||| ||||||  ||| ||||||||| ||      
T  36379465 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattatct 36379564  T
Q  439 -------gccaaaacactaag-tggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 530  Q
           ||||||||||  || |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||    
T  36379565 tgagtatgccaaaacacccaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctggaaacaaagaaaagtccag 36379664  T
Q  531 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36379665 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 36379735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 341 - 601
Target Start/End: Original strand, 36377181 - 36377450
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat-- 438  Q
    ||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||  |||||||| ||||||  ||| ||||||||| ||      
T  36377181 tggctcaaggacaaa-ggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattattt 36377279  T
Q  439 -------gccaaaacactaag-tggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 530  Q
           ||||||||||| || |||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||  ||||||||||||||  ||    
T  36377280 tgagtatgccaaaacacttaggtggtgagccttatttatactactctaggaaggctctccattacaaagtagaaatatctgaaaacaaagaaaagttcag 36377379  T
Q  531 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36377380 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttag 36377450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 341 - 591
Target Start/End: Original strand, 21268120 - 21268388
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat-- 438  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||  |||||||| ||||||  ||| ||||||||| ||      
T  21268120 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattatct 21268219  T
Q  439 ----------------gccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaa 522  Q
                    ||| |||||||| || |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21268220 tgagtatttggattatgcctaaacactaggtagtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaa 21268319  T
Q  523 aagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagt 591  Q
    ||||||||||||||||||||| ||||||||||  |||||||||||||||||||| ||||||||||||||    
T  21268320 aagtctagagatatggatactttagtacataaaactagaaggatctagaaaagtcaagacttccctagt 21268388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 148; Significance: 8e-78; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 341 - 596
Target Start/End: Complemental strand, 29514 - 29261
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |  | |||||||| |||| ||| ||||||||  ||||    
T  29514 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatgttctcaaagaaagttgt-tattatttaaatgcttcaatgcttgagtatgc 29416  T
Q  441 caaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggat 540  Q
    | |  ||||  ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  29415 ctacgcacttggtggtgagccttatttatactactctaggaagactctccattacaaactaaaaatatctagaaac-aagaaaagtctagagatatggat 29317  T
Q  541 actctagtacataagcctagaaggatctagaaaagttaagacttccctagtgctta 596  Q
      ||||||||||| | |||||||||||||||||  |||||| ||||||||||||||    
T  29316 gttctagtacatatgactagaaggatctagaaacattaagatttccctagtgctta 29261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 340 - 596
Target Start/End: Complemental strand, 31830 - 31574
Alignment:
Q  340 gtggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatg 439  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |  | ||||||||||||| | | ||||||||  |||    
T  31830 gtggctcaaggacaaaaggaaaggtagagaaaatagagaaactctctaatgttctcaaagaaatttgt-tattatttgaatgctacaatgcttgagtatg 31732  T
Q  440 ccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagag--atatg 537  Q
    || | |||||  ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||  |||||    
T  31731 cctacacacttggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctaaaaac-aagaaaagtctagagatatatg 31633  T
Q  538 gatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgctta 596  Q
    |||  ||||||||||| | |||||||||||||||||  |||||| ||||||||||||||    
T  31632 gatgttctagtacatatgactagaaggatctagaaacattaagatttccctagtgctta 31574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 145; Significance: 5e-76; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 341 - 554
Target Start/End: Complemental strand, 1801 - 1579
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 440  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||  |||||||| ||||||| ||| ||||||||||||||    
T  1801 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatatcctcaaagaaaag-ttatattacttgaatgattcaatgcttgatgatgc 1703  T
Q  441 ----------caaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 530  Q
              |||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1702 ttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctag 1603  T
Q  531 agatatggatactctagtacataa 554  Q
    ||||||||||||||||||||||||    
T  1602 agatatggatactctagtacataa 1579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 6e-54; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 341 - 517
Target Start/End: Complemental strand, 4531020 - 4530835
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatg---- 436  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||||        
T  4531020 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattacttgaatgattcaatgcttgatgatgc 4530922  T
Q  437 ------atgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 517  Q
          |||||||||||||| ||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  4530921 ttcagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaaca 4530835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 341 - 511
Target Start/End: Complemental strand, 4533317 - 4533138
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatg---- 436  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||||        
T  4533317 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattacttgaatgattcaatgcttgatgatgc 4533219  T
Q  437 ------atgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatcta 511  Q
          |||||||||||||| ||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  4533218 ttcagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatcta 4533138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 443 - 596
Target Start/End: Original strand, 18966221 - 18966374
Alignment:
Q  443 aaacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatac 542  Q
    |||||||  ||||||| |||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||| |||||||||| ||||||||||||||    
T  18966221 aaacacttggtggtgagccttatttatactactctaggaagacactccatgacacactagaaatatctagaaaccaagaaaagtcaagagatatggatac 18966320  T
Q  543 tctagtacataagcctagaaggatctagaaaagttaagacttccctagtgctta 596  Q
    |||||||| || | |||||||||||||||||  |||||| || |||||||||||    
T  18966321 tctagtacgtatgactagaaggatctagaaacattaagattttcctagtgctta 18966374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 517 - 592
Target Start/End: Complemental strand, 1701179 - 1701104
Alignment:
Q  517 aaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtg 592  Q
    ||||||||| ||||| ||||||||| |||| | |||| | ||||||||||||||||||||||||| ||||||||||    
T  1701179 aaagaaaagcctagaaatatggataatctaattcatatgactagaaggatctagaaaagttaagatttccctagtg 1701104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 518 - 574
Target Start/End: Complemental strand, 8535578 - 8535522
Alignment:
Q  518 aagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaa 574  Q
    |||||||||||||||||||||||||| ||||  ||| | ||||||||||||| ||||    
T  8535578 aagaaaagtctagagatatggatactttagtttatatgactagaaggatctaaaaaa 8535522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 341 - 420
Target Start/End: Original strand, 3707 - 3785
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaat 420  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||    
T  3707 tggctcagggacaaaaggaaaggtagagaaaatagagtaactctctaatattctcaaagaaagt-ttatattatttgaat 3785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 341 - 440
Target Start/End: Complemental strand, 88531 - 88433
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 440  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||  |||||||| ||||||| ||| ||| ||||||||||    
T  88531 tggctcagggacaaaaggaaaggtagagaaaatagagaaagactctaatattctcaaagaaaa-gttatattacttgaatgattcaatgtttgatgatgc 88433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 343 - 487
Target Start/End: Complemental strand, 20642359 - 20642217
Alignment:
Q  343 gctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgcca 442  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||  | ||||||||||| ||| ||||||||  || ||     
T  20642359 gctcagggacaaaatgaaaggtagagaaaatagagaaattctctaatattctcaaag-aaatatatttttatttgaatgcttcaatgcttgactat-cct 20642262  T
Q  443 aaacactaagtggtgaaccttatttatactactctaggaagactc 487  Q
    | |||||   || ||| |||||||||||||||| |||||||||||    
T  20642261 acacacttgatgatgagccttatttatactactgtaggaagactc 20642217  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 452 - 517
Target Start/End: Complemental strand, 21199373 - 21199308
Alignment:
Q  452 gtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 517  Q
    ||||||||||||||||||| ||||| |||||| || | ||||||||||||||||||||||||||||    
T  21199373 gtggtgaaccttatttatagtactccaggaaggctgtacattacaaactagaaatatctagaaaca 21199308  T

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Target: scaffold1361 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 341 - 435
Target Start/End: Complemental strand, 140 - 46
Alignment:
Q  341 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgat 435  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||  |||  |||||||| ||||||| ||| |||||||||    
T  140 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactttaatattctcaaacgaaaagttatattacttgaatgattcaatgcttgat 46  T

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Target: scaffold0045 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 402
Target Start/End: Complemental strand, 64137 - 64082
Alignment:
Q  345 tcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaa 402  Q
    |||| ||||||| |||||||| ||||||||||||||  | ||||||||||||||||||    
T  64137 tcagagacaaaatgaaaggtaaagaaaatagagaaa--ccctaatattctcaaagaaa 64082  T

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Target: scaffold0045; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 402
Target Start/End: Complemental strand, 71469 - 71414
Alignment:
Q  345 tcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaa 402  Q
    |||| ||||||| |||||||| ||||||||||||||  | ||||||||||||||||||    
T  71469 tcagagacaaaatgaaaggtaaagaaaatagagaaa--ccctaatattctcaaagaaa 71414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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