View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5016-Insertion-5 (Length: 588)
Name: NF5016-Insertion-5
Description: NF5016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5016-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 8 - 588
Target Start/End: Complemental strand, 33483725 - 33483144
Alignment:
| Q |
8 |
catagctttctttgcagatagccgcttggaaggttcatattgcagcatttgctgaaaataaaatagagaagaaaaacgacattattaaaatagaaaaggg |
107 |
Q |
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| T |
33483725 |
catagctttctttgcagatagccgcttggaaggttcatactgcagcatttgctgaaaataaaatagagaagaaaaacaacattattaaaatagaaaaagg |
33483626 |
T |
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| Q |
108 |
acaccagttaatagaaaatgttaagtaatcaagggggctaacttacagagagtaaatccactccagtctcttccaaaccgggaacagcctttgaaagact |
207 |
Q |
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| T |
33483625 |
acaccagttaatagaaaatgttaagtaatcaagggggctaacttacagagagtaaatccactccagtctcttccaaaccgggaacagcctttgaaagact |
33483526 |
T |
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| Q |
208 |
ttgaggaccccactgagggtactcatgccagttcattagtttactaacacctggccacacatcttcattaggagtccccaacagcctgaatatatggagg |
307 |
Q |
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| T |
33483525 |
ttgaggaccccactgagggtactcatgccagttcattagtttactaacacctggccacacatcttcattaggagtccccaacagcctgaatatatggagg |
33483426 |
T |
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| Q |
308 |
agttgttgcagctcagaatcaccaggaaatagtgctgtcttggtaacaagttcagctataataaccagataaaaatcagatt-nnnnnnnccctgctgca |
406 |
Q |
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| T |
33483425 |
agttgttgcagctcagaatcaccaggaaatagtgctgtcttggtaacaagttcagctataataaccagataaaaatcagattaaaaaaaaccctgctgta |
33483326 |
T |
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| Q |
407 |
agataaacaaatactaagaaataggcttttacttggttgaatgaaatatatccttaccgaaaatgcaggcaacggaccacatatccacagccattgagta |
506 |
Q |
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|||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33483325 |
agataaacaaatactaagaaatagccctttacttggttgaacgaaatatatccttaccgaaaatgcaggcaacagaccacatatccacagccattgagta |
33483226 |
T |
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| Q |
507 |
atgggtagcccccaaaaggacttcaggtgctctataccacagggttagtatctgaaaatgacacaaaagtaatgcaatcagc |
588 |
Q |
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| T |
33483225 |
atgggtagcccccaaaaggacttcaggtgctctataccacagggttagtatctgaaaatgacacaaacgtaatgcaatcagc |
33483144 |
T |
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