View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5016-Insertion-6 (Length: 547)

Name: NF5016-Insertion-6
Description: NF5016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5016-Insertion-6
NF5016-Insertion-6
[»] chr2 (3 HSPs)
chr2 (8-546)||(17150568-17151109)
chr2 (322-531)||(28948467-28948677)
chr2 (409-455)||(35996594-35996640)
[»] chr6 (2 HSPs)
chr6 (288-547)||(30491898-30492157)
chr6 (9-168)||(30491628-30491786)
[»] chr1 (9 HSPs)
chr1 (288-547)||(15114405-15114664)
chr1 (288-547)||(15127421-15127680)
chr1 (8-174)||(15121437-15121602)
chr1 (8-174)||(15145625-15145790)
chr1 (288-475)||(15121142-15121330)
chr1 (288-475)||(15145330-15145518)
chr1 (462-547)||(46391776-46391861)
chr1 (322-523)||(8681628-8681829)
chr1 (380-509)||(12266341-12266470)
[»] scaffold0291 (1 HSPs)
scaffold0291 (343-485)||(15874-16016)
[»] scaffold0013 (1 HSPs)
scaffold0013 (343-407)||(99234-99298)


Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 8 - 546
Target Start/End: Original strand, 17150568 - 17151109
Alignment:
Q  8 ctggaatggtcggcacacaattaaggaatcccaactgctgaaacaaatgatgttacagcggaaagtgatgaaacaaatgttgatacaaatgatgttgcaa 107  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  17150568 ctggaatggtcggcacacaatcaaggaatcccaactgctgaaacaaattatgttacagcggaaagtgatgaaacaaatgttgatacaaatgatgttaca- 17150666  T
Q  108 gctaaaaaagatgtaaatgacatggagattagcgcatctgatatgccccttgacaaccaaaatgatgcc----agcaacccacagatgtctatcccacac 203  Q
    | | |||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||      |||| |||||||||||| |||||||||    
T  17150667 gttgaaaaagctgtaaatgacatggagattagcgcatctgctatgccccttggcaaccaaaatgatgtgttgtagcaccccacagatgtccatcccacac 17150766  T
Q  204 tagttaattctaatgatgggcagattatgcatgttaattccaatgatgatgcaactgagcagattttggaagctcaaataattcagtcactacggtgcag 303  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17150767 tagttaattctaatgatgggcagattatgcatgttaattctaatgatgatgcaattgagcagattttggaagctcaaataattcagtcactacggtgcag 17150866  T
Q  304 caccaagaggcacaaaccagcaaaaacattcagagcggtttggatttgtgggctagaattcgtgagtatgacaaacggactgctgaggagggatttacgc 403  Q
    |||||||||||||| ||||||||||||||| || || |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17150867 caccaagaggcacacaccagcaaaaacatttagcgcagtttggatttatgggctagaattcgtgagtatgacaaacgaactgctgaggagggatttacgc 17150966  T
Q  404 aagtactaagcaagcagcagaagcaagcaaggaagaaacaagtcttgggaaagcctctgtataacacccgtactaggggtggtccttctccgtctatcca 503  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||    
T  17150967 aagtactaagcaagcagcagaagcaagcaaggaagaaccaagtcttgggaaagcctccgcataacacccgtactaggggtggtccttctccatctatcca 17151066  T
Q  504 atgaatctgttatattggaacgtctgaggtaagtgttgtgctg 546  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  17151067 atgaatctgttatattggaatgtctgaggtaagtgttgtgctg 17151109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 322 - 531
Target Start/End: Original strand, 28948467 - 28948677
Alignment:
Q  322 agcaaaaacattcagagcggtttggatttgtgggctagaattcgtgagtatgacaaacggactgctgaggagggatttacgcaagtactaagcaagcagc 421  Q
    |||||||||||  |||| |||||||| || ||||||||||| |  || || ||| ||||||| ||||| || ||||| ||||||||||| |  ||  | |    
T  28948467 agcaaaaacatatagagtggtttggagttatgggctagaatccaagaatacgaccaacggaccgctgaagaaggattcacgcaagtactcacaaaaaaac 28948566  T
Q  422 agaagcaagcaaggaagaaa-caagtcttgggaaagcctctgtataacacccgtactaggggtggtccttctccgtctatccaatgaatctgttatattg 520  Q
    || ||||||  ||||| ||| |||||| | |||||||| |  ||||  |||||| | |||||||||||| ||||  ||  ||||||||||||||||||||    
T  28948567 agcagcaaggtaggaaaaaaacaagtcctcggaaagccgcattatacaacccgtgcaaggggtggtcctcctccaactgaccaatgaatctgttatattg 28948666  T
Q  521 gaacgtctgag 531  Q
    ||| |||||||    
T  28948667 gaatgtctgag 28948677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 35996594 - 35996640
Alignment:
Q  409 ctaagcaagcagcagaagcaagcaaggaagaaacaagtcttgggaaa 455  Q
    ||||||||| ||||||| ||| |||||||||| ||||||||||||||    
T  35996594 ctaagcaagaagcagaaacaaacaaggaagaatcaagtcttgggaaa 35996640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 152; Significance: 3e-80; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 288 - 547
Target Start/End: Original strand, 30491898 - 30492157
Alignment:
Q  288 agtcactacggtgcagcaccaagaggcacaaaccagcaaaaacattcagagcggtttggatttgtgggctagaattcgtgagtatgacaaacggactgct 387  Q
    ||||||||| ||||| || ||||||||||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||     
T  30491898 agtcactactgtgcaacaacaagaggcacacatcagcaaaaacattcagagtggtttggatttatgggctagaattcgtgagtatgaccaacggactgcc 30491997  T
Q  388 gaggagggatttacgcaagtactaagcaagcagcagaagcaagcaaggaagaaacaagtcttgggaaagcctctgtataacacccgtactaggggtggtc 487  Q
    ||||||||||||||||||||| |||||||| |||| || ||| |||||||||| ||||| ||||||||||| | ||||||||| ||||| || |||||||    
T  30491998 gaggagggatttacgcaagtattaagcaagaagcaaaaacaaacaaggaagaaccaagtattgggaaagccgccgtataacactcgtacaagcggtggtc 30492097  T
Q  488 cttctccgtctatccaatgaatctgttatattggaacgtctgaggtaagtgttgtgctga 547  Q
    ||||||| |||||||||||||| || | |||||||||||| |||||||||| ||||||||    
T  30492098 cttctccatctatccaatgaatttggtttattggaacgtccgaggtaagtgctgtgctga 30492157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 30491628 - 30491786
Alignment:
Q  9 tggaatggtcggcacacaattaaggaatcccaactgctgaaacaaatgatgttacagcggaaagtgatgaaacaaatgttgatacaaatgatgttgcaag 108  Q
    ||||| ||||| |||||||| ||||||| |||| |||| || |||||||||||| ||| ||||||||||| ||||||||| |||||||||||||| | ||    
T  30491628 tggaacggtcgacacacaatcaaggaataccaattgctaaatcaaatgatgttatagctgaaagtgatgacacaaatgtttatacaaatgatgttac-ag 30491726  T
Q  109 ctaaaaaagatgtaaatgacatggagattagcgcatctgatatgccccttgacaaccaaa 168  Q
    || |||||| ||| ||| ||||||||||||||||||||| |||||||||||||| |||||    
T  30491727 ctgaaaaagttgttaataacatggagattagcgcatctgctatgccccttgacatccaaa 30491786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 3e-80; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 288 - 547
Target Start/End: Complemental strand, 15114664 - 15114405
Alignment:
Q  288 agtcactacggtgcagcaccaagaggcacaaaccagcaaaaacattcagagcggtttggatttgtgggctagaattcgtgagtatgacaaacggactgct 387  Q
    ||||||||| |||||||| ||||||||||| ||||||||||||||||||||  |||||||||| |||||||||||||||||||||||| |  ||||| |     
T  15114664 agtcactactgtgcagcaacaagaggcacacaccagcaaaaacattcagagtagtttggatttttgggctagaattcgtgagtatgaccagtggactacc 15114565  T
Q  388 gaggagggatttacgcaagtactaagcaagcagcagaagcaagcaaggaagaaacaagtcttgggaaagcctctgtataacacccgtactaggggtggtc 487  Q
    |||||||||||||||||||||| | ||||| ||||||| ||  |||||||||| ||||||||||||||||| | ||||||||| ||||| ||| ||||||    
T  15114564 gaggagggatttacgcaagtaccaggcaagaagcagaaacattcaaggaagaaccaagtcttgggaaagccgccgtataacactcgtacaaggagtggtc 15114465  T
Q  488 cttctccgtctatccaatgaatctgttatattggaacgtctgaggtaagtgttgtgctga 547  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||||    
T  15114464 cttctccatctatccaatgaatttgttatattggaacgtccgaggtgagtgttgtgctga 15114405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 288 - 547
Target Start/End: Complemental strand, 15127680 - 15127421
Alignment:
Q  288 agtcactacggtgcagcaccaagaggcacaaaccagcaaaaacattcagagcggtttggatttgtgggctagaattcgtgagtatgacaaacggactgct 387  Q
    ||||||||| |||||||| ||||||||||| ||||||||||||||||||||  |||||||||| |||||||||||||||||||||||| |  ||||| |     
T  15127680 agtcactactgtgcagcaacaagaggcacacaccagcaaaaacattcagagtagtttggatttttgggctagaattcgtgagtatgaccagtggactacc 15127581  T
Q  388 gaggagggatttacgcaagtactaagcaagcagcagaagcaagcaaggaagaaacaagtcttgggaaagcctctgtataacacccgtactaggggtggtc 487  Q
    |||||||||||||||||||||| | ||||| ||||||| ||  |||||||||| ||||||||||||||||| | ||||||||| ||||| ||| ||||||    
T  15127580 gaggagggatttacgcaagtaccaggcaagaagcagaaacattcaaggaagaaccaagtcttgggaaagccgccgtataacactcgtacaaggagtggtc 15127481  T
Q  488 cttctccgtctatccaatgaatctgttatattggaacgtctgaggtaagtgttgtgctga 547  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||||    
T  15127480 cttctccatctatccaatgaatttgttatattggaacgtccgaggtgagtgttgtgctga 15127421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 15121602 - 15121437
Alignment:
Q  8 ctggaatggtcggcacacaattaaggaatcccaactgctgaaacaaatgatgttacagcggaaagtgatgaaacaaatgttgatacaaatgatgttgcaa 107  Q
    |||||| ||| |||||||||| |||||||| |||||||| ||  ||||||||||||||  ||||||||| |||||| ||||||||||||||||||| |||    
T  15121602 ctggaaaggttggcacacaatcaaggaatctcaactgctaaattaaatgatgttacagttgaaagtgattaaacaactgttgatacaaatgatgttacaa 15121503  T
Q  108 gctaaaaaagatgtaaatgacatggagattagcgcatctgatatgccccttgacaaccaaaatgatg 174  Q
     || |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15121502 -ctgaaaaagatgttaatgacatggagattagcgcatctgctatgccccttgacaaccaaaatgatg 15121437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 15145790 - 15145625
Alignment:
Q  8 ctggaatggtcggcacacaattaaggaatcccaactgctgaaacaaatgatgttacagcggaaagtgatgaaacaaatgttgatacaaatgatgttgcaa 107  Q
    |||||| ||| |||||||||| |||||||| |||||||| ||  ||||||||||||||  ||||||||| |||||| ||||||||||||||||||| |||    
T  15145790 ctggaaaggttggcacacaatcaaggaatctcaactgctaaattaaatgatgttacagttgaaagtgattaaacaactgttgatacaaatgatgttacaa 15145691  T
Q  108 gctaaaaaagatgtaaatgacatggagattagcgcatctgatatgccccttgacaaccaaaatgatg 174  Q
     || |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15145690 -ctgaaaaagatgttaatgacatggagattagcgcatctgctatgccccttgacaaccaaaatgatg 15145625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 288 - 475
Target Start/End: Complemental strand, 15121330 - 15121142
Alignment:
Q  288 agtcactacggtgcagcaccaagaggcacaaaccagcaaaaacattcagagcggtttggatttgtgggctagaattcgtgagtatgacaaacggactgct 387  Q
    ||||||||| |||||||| ||||||||||| | ||||||||| ||||| || ||||||||||| |||||||||||||||||||||||| | |||||| |     
T  15121330 agtcactactgtgcagcaacaagaggcacacaacagcaaaaaaattcaaagtggtttggatttatgggctagaattcgtgagtatgaccagcggactacc 15121231  T
Q  388 gaggagggatttacgcaagtactaagcaagcagcagaagcaagc-aaggaagaaacaagtcttgggaaagcctctgtataacacccgta 475  Q
    ||||||||||||| |||||||| ||||||| |||||||  ||   ||| ||||| |||||||||||||||||   ||||||||| ||||    
T  15121230 gaggagggatttaagcaagtaccaagcaagaagcagaaaaaaaataagaaagaaccaagtcttgggaaagccgtcgtataacactcgta 15121142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 288 - 475
Target Start/End: Complemental strand, 15145518 - 15145330
Alignment:
Q  288 agtcactacggtgcagcaccaagaggcacaaaccagcaaaaacattcagagcggtttggatttgtgggctagaattcgtgagtatgacaaacggactgct 387  Q
    ||||||||| |||||||| ||||||||||| | ||||||||| ||||| || ||||||||||| |||||||||||||||||||||||| | |||||| |     
T  15145518 agtcactactgtgcagcaacaagaggcacacaacagcaaaaaaattcaaagtggtttggatttatgggctagaattcgtgagtatgaccagcggactacc 15145419  T
Q  388 gaggagggatttacgcaagtactaagcaagcagcagaagcaagc-aaggaagaaacaagtcttgggaaagcctctgtataacacccgta 475  Q
    ||||||||||||| |||||||| ||||||| |||||||  ||   ||| ||||| |||||||||||||||||   ||||||||| ||||    
T  15145418 gaggagggatttaagcaagtaccaagcaagaagcagaaaaaaaataagaaagaaccaagtcttgggaaagccgtcgtataacactcgta 15145330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 462 - 547
Target Start/End: Complemental strand, 46391861 - 46391776
Alignment:
Q  462 gtataacacccgtactaggggtggtccttctccgtctatccaatgaatctgttatattggaacgtctgaggtaagtgttgtgctga 547  Q
    ||||||||||||||| ||||||||||||||||| |||||| ||||| |||| | |||||||||||| |||||||||||||||||||    
T  46391861 gtataacacccgtacaaggggtggtccttctccatctatctaatgattctggtttattggaacgtccgaggtaagtgttgtgctga 46391776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 523
Target Start/End: Complemental strand, 8681829 - 8681628
Alignment:
Q  322 agcaaaaacattcagagcggtttggatttgtgggctagaattcgtgagtatgacaaacggactgctgaggagggatttacgcaagtactaagcaagcagc 421  Q
    ||||||||||| || || | |||||| || ||||||||||| || || || ||| |||||||||| |   | ||||| |||||||||||    ||| |||    
T  8681829 agcaaaaacatacatagtgatttggaattatgggctagaatccgcgaatacgaccaacggactgcagcaaaaggattaacgcaagtactctcaaagaagc 8681730  T
Q  422 agaagcaagcaaggaagaaacaagtcttgggaaagcctctgtataacacccgtactaggggtggtccttctccgtctatccaatgaatctgttatattgg 521  Q
    || ||||||| | ||| ||||||||| | |||||||| |  ||||| |||||| | | |||||||| | ||||  ||  |||||||||||||||||||||    
T  8681729 agcagcaagctatgaaaaaacaagtcctcggaaagccgcattataaaacccgtgcaaagggtggtcatcctccaactgcccaatgaatctgttatattgg 8681630  T
Q  522 aa 523  Q
    ||    
T  8681629 aa 8681628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 509
Target Start/End: Original strand, 12266341 - 12266470
Alignment:
Q  380 ggactgctgaggagggatttacgcaagtactaagcaagcagcagaagcaagcaaggaagaaacaagtcttgggaaagcctctgtataacacccgtactag 479  Q
    ||||||| || ||||||||||| |||||  ||| |||| | ||||||||| ||| ||| |||| ||||||||||||| | |  ||||  |||||| | ||    
T  12266341 ggactgcagacgagggatttacacaagtcttaaccaagaaacagaagcaaacaatgaaaaaactagtcttgggaaagtcgccttatagaacccgtgcgag 12266440  T
Q  480 gggtggtccttctccgtctatccaatgaat 509  Q
    ||||| |||| |||| |||  |||||||||    
T  12266441 gggtgatcctcctccatctgcccaatgaat 12266470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 343 - 485
Target Start/End: Complemental strand, 16016 - 15874
Alignment:
Q  343 ttggatttgtgggctagaattcgtgagtatgacaaacggactgctgaggagggatttacgcaagtactaagcaagcagcagaagcaagcaaggaagaaac 442  Q
    |||||||| ||||||||||||||||| |||||||||||||| || ||||| ||||| || ||||| ||   |||  ||||  | ||||||  ||| ||||    
T  16016 ttggatttatgggctagaattcgtgaatatgacaaacggaccgcggaggaaggattcactcaagttctttccaataagcaacaacaagcacagaaaaaac 15917  T
Q  443 aagtcttgggaaagcctctgtataacacccgtactaggggtgg 485  Q
    |||| || |||||  || |||||||||| ||||| ||||||||    
T  15916 aagttttaggaaaatctttgtataacactcgtacaaggggtgg 15874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 407
Target Start/End: Original strand, 99234 - 99298
Alignment:
Q  343 ttggatttgtgggctagaattcgtgagtatgacaaacggactgctgaggagggatttacgcaagt 407  Q
    |||||||| ||||||||||||||||| |||||||||||||| || ||||| ||||| || |||||    
T  99234 ttggatttatgggctagaattcgtgaatatgacaaacggaccgcggaggaaggattcactcaagt 99298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University