View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5016_low_1 (Length: 435)
Name: NF5016_low_1
Description: NF5016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5016_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 65 - 419
Target Start/End: Complemental strand, 46731515 - 46731166
Alignment:
| Q |
65 |
accgaatacactctaagttttattttgtgaaggtttgttgcagatctgattcaattcggagctgtgtatttcgctcttgtttctccggagcctcctccta |
164 |
Q |
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| T |
46731515 |
accgaatacacactaagttttattttgtgaaggtttgttgcagatctgattcaattcggagctgtgtatttcgctcttgtttctccggagcctcctccta |
46731416 |
T |
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| Q |
165 |
cggctactgcagagcaaattagaattttcgaacaagtaactgaaccattggttctgcaaaaaagagcttccctcaaaggaaaaactataagagaagctca |
264 |
Q |
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| T |
46731415 |
cggctactgcagagcaaattagaattttcgaacaagtaactgaaccattggttctgcaaaaaagatcttccctcaaaggaaaaactataagagaagctca |
46731316 |
T |
|
| Q |
265 |
aaaaactttccgtgtaactgatgcgaatcagtttgttgaaccaggaacttatttgcgagtgcatgtgcaccccaagcgttttcctaggtaaattagaatg |
364 |
Q |
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| T |
46731315 |
aaaaactttccgtgtaactgatgcgaatcagtttgttgaaccaggaacttatttgcgagtgcatgtgcaccccaagcgttttcctaggtaaattagaatg |
46731216 |
T |
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| Q |
365 |
gtagtagttggaaattggaattgcatttttgtaattgtagtgtcatgatatgata |
419 |
Q |
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| T |
46731215 |
gt-----ttggaaattggaattgcatttttgtaattgtagtgtcatgatatgata |
46731166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 46731590 - 46731535
Alignment:
| Q |
16 |
ccaaattcctagctagaattttattcttcgactcatcataatcatttttaccgaat |
71 |
Q |
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| T |
46731590 |
ccaaattcctagctagaattttattcttcgactcatcataatcatttttaccgaat |
46731535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 77 - 354
Target Start/End: Complemental strand, 7927947 - 7927670
Alignment:
| Q |
77 |
ctaagttttattttgtgaaggtttgttgcagatctgattcaattcggagctgtgtatttcgctcttgtttctccggagcctcctcctacggctactgcag |
176 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| | |||||||||| ||||||| || |
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| T |
7927947 |
ctaagttttattttgtgaaggtttgttgcggatttgattcaattcggagctgtgtatttcgctcttgtttgtccgaaacctcctcctaatgctactgaag |
7927848 |
T |
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| Q |
177 |
agcaaattagaattttcgaacaagtaactgaaccattggttctgcaaaaaagagcttccctcaaaggaaaaactataagagaagctcaaaaaactttccg |
276 |
Q |
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|||||||||| |||| || |||||||||||||| ||||| ||| |||||||||||| ||||||||||||||||||||||||| || ||||| ||||| |
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| T |
7927847 |
agcaaattagggtttttaaagaagtaactgaaccactggttgtgcgaaaaagagcttctgtcaaaggaaaaactataagagaagcacagaaaacgttccg |
7927748 |
T |
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| Q |
277 |
tgtaactgatgcgaatcagtttgttgaaccaggaacttatttgcgagtgcatgtgcaccccaagcgttttcctaggta |
354 |
Q |
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| T |
7927747 |
tgtaactgatgtggatcaatttgttgaaccaggaacatatttgcgagtgcacgtgcaccctaagcgttttcctaggta |
7927670 |
T |
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