View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5016_low_3 (Length: 394)
Name: NF5016_low_3
Description: NF5016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5016_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 18968116 - 18967758
Alignment:
| Q |
1 |
atactaaaattgtttgaagtattctaatagtataaaaataatgacaattaatgtgcaagcaaataagacactttatttaattgaaaatcaattttaggta |
100 |
Q |
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| T |
18968116 |
atactaaaattgtttgaagtattctaatagtataaaaataatgacaattaatgtgcaagcaaataagacactttatttaattgaaaatcaattttaggta |
18968017 |
T |
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| Q |
101 |
cctcatatatttctgcaaatcaagttatagaaccttttgacggaataatcaagttatagaaccttttgcaatcatatagaaaaccgttcagtcactgcaa |
200 |
Q |
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| T |
18968016 |
cctcatatatttctgcaaatcaagttatagaaccttttgacggaataatctagttatagaaccttttgcaatcatatagaaaaccgttcaatcactgcaa |
18967917 |
T |
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| Q |
201 |
ttttc-nnnnnnntcacctgtgtttattccaacttgtaagcatgtaacctttcccatttgattccaatggtgtttattttcagccattaagcacacatgg |
299 |
Q |
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| T |
18967916 |
ttttcaaaaaaaatcaccagtgtttattccaacttgtaagcatgtaacctttcccatttgattccaatggtttttattttcagccattaagcacacatgg |
18967817 |
T |
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| Q |
300 |
a--agaggctttgcttacaaacgtctcctttttgttttatactgctaattaccatgtaacc |
358 |
Q |
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| T |
18967816 |
atcagaggctttg--ttcaaacgtctcctttttgttttatactgctaattaccatgtaacc |
18967758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 169 - 357
Target Start/End: Original strand, 18948930 - 18949109
Alignment:
| Q |
169 |
caatcatatagaaaaccgttcagtcactgcaattttcnnnnnnntcacctgtgtttattccaacttgtaagcatgtaacctttcccatttgattccaatg |
268 |
Q |
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| T |
18948930 |
caataatatagaaaaccgttcagtcattgcaattttc---------acttgtgtttattccaacttgtaagcatgtaacctttcccatttgattccaatg |
18949020 |
T |
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| Q |
269 |
gtgtttattttcagccattaagcacacatggaagaggctttgcttacaaacgtctcctttttgttttatactgctaattaccatgtaac |
357 |
Q |
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| T |
18949021 |
gtgtttattttcagcctttaagcacacatggaagaggctttgcttataaacgtctcctttttgttatatactgttaattatcatgtaac |
18949109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 6 - 149
Target Start/End: Original strand, 18948115 - 18948258
Alignment:
| Q |
6 |
aaaattgtttgaagtattctaatagtataaaaataatgacaattaatgtgcaagcaaataagacactttatttaattgaaaatcaattttaggtacctca |
105 |
Q |
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| T |
18948115 |
aaaattgtctgaagtattctaatagtataaaaataatgacaactaatgtgcaagaaaataagacactttatttaattgaaaatccattttaggtacctca |
18948214 |
T |
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| Q |
106 |
tatatttctgcaaatcaagttatagaaccttttgacggaataat |
149 |
Q |
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| T |
18948215 |
tatatttttgcaaaacaagttatagaaccttttggcggaataat |
18948258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 38 - 149
Target Start/End: Complemental strand, 19005627 - 19005516
Alignment:
| Q |
38 |
ataatgacaattaatgtgcaagcaaataagacactttatttaattgaaaatcaattttaggtacctcatatatttctgcaaatcaagttatagaaccttt |
137 |
Q |
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|||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| | |
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| T |
19005627 |
ataatgacaaccaatgtccaggcaaataagacactttatttaattgaaaatcaattttaggtacctcatatattttggcaaaacaagttaaagaacctct |
19005528 |
T |
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| Q |
138 |
tgacggaataat |
149 |
Q |
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| T |
19005527 |
tggaggaataat |
19005516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 18993051 - 18992941
Alignment:
| Q |
25 |
taatagtataaaaataatgacaattaatgtgcaagcaaataagacactttatttaattgaaaatcaattttaggtacctcatatatttctgcaaatcaag |
124 |
Q |
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|||||||| || |||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||| |||| |
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| T |
18993051 |
taatagtaataagataatgacaaccaatgtgcaggcaaataagacactttatttaattgaaaatcatttttaggtacctcatatattttggtaaaacaag |
18992952 |
T |
|
| Q |
125 |
ttatagaacct |
135 |
Q |
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| T |
18992951 |
ttaaagaacct |
18992941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 11174631 - 11174700
Alignment:
| Q |
41 |
atgacaattaatgtgcaagcaaataagacactttatttaattgaaaatcaattttaggtacctcatatat |
110 |
Q |
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| T |
11174631 |
atgacaagtaacgtgcaagcaaataagataccctatttaatagaaagttcattttaggtacctcatatat |
11174700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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