View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5016_low_5 (Length: 247)
Name: NF5016_low_5
Description: NF5016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5016_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 8579019 - 8578789
Alignment:
| Q |
5 |
gagaagcaaaggaggccgttacatgaaccaccgagaagatcaatattagggttaaataaattgatgtttaaaggaacggagaatttaacgtgggttgtta |
104 |
Q |
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| T |
8579019 |
gagatgcaaaggaggccgttacatgaaccaccgagaagatcaatattagggttaaataaattgatgtttaaaggaacggagaatttaacgtgggttgtta |
8578920 |
T |
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| Q |
105 |
gattagagaaatcaagttggtagagatcatagttgtggcggaggatgatcttgatactgaaggagtttttgaagtaatgtttggtgaaggtgtgggaatc |
204 |
Q |
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| T |
8578919 |
gattagagaaatcaagttggtagagatcatagttgtggcggaggatgatcttgatactgaaggagtttttgaggtaatgtttggtgaaggtgtgggaatc |
8578820 |
T |
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| Q |
205 |
tatgaaggatcgaagtgatttagaaattgat |
235 |
Q |
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| T |
8578819 |
tatgaaggatcgaagtgatttagaaattgat |
8578789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 8577907 - 8577697
Alignment:
| Q |
14 |
aggaggccgttacatgaaccaccgagaagatcaatattagggttaaataaattgatgtttaaaggaacggagaatttaacgtgggttgttagattagaga |
113 |
Q |
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| T |
8577907 |
aggagaccattacatgaaccaccaagaagatcaattttagggttccataaattgatgtctaaaggattgcgga-tttaacgtgggtggttagattaggga |
8577809 |
T |
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| Q |
114 |
aatcaagttggtagagatcatagttgtggcggaggatgatcttgatactgaaggagtttttgaagtaatgtttggtgaaggtgtgggaatctatgaagga |
213 |
Q |
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| T |
8577808 |
aatcaagttggtagagatcggagttgtggcagaggataaaattgaaactgagggagtttttgaggtaaaagttgatgaagttgtgggaatcaattaagga |
8577709 |
T |
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| Q |
214 |
tcgaagtgattt |
225 |
Q |
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| T |
8577708 |
tcaaattgattt |
8577697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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