View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5016_low_6 (Length: 207)
Name: NF5016_low_6
Description: NF5016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5016_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 5 - 190
Target Start/End: Complemental strand, 33483907 - 33483721
Alignment:
| Q |
5 |
atccaaatccttacaatccacaactttatggaatacnnnnnnnnn-taagacggcaaatgttatcatcctaaaacagactaggatatgcgctcgagagaa |
103 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33483907 |
atccaaatccttacaatccacaactttatggaatacaaagaaaaaataagacggcaaatgttatcaacctaaaacagactaggatatgcgctcgagagaa |
33483808 |
T |
|
| Q |
104 |
gcatgataagaattcctaaatccaaaacatcatttggaacctagagataggtcttgtctaggtcatcaaagtaagggtgttccatag |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33483807 |
gcatgataagaattcctaaatccaaaacatcatttggaacctagagataggtcttgtctaggtcatcaaagtaagggtgttccatag |
33483721 |
T |
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