View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5017-Insertion-1 (Length: 1140)
Name: NF5017-Insertion-1
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5017-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 634 - 1011
Target Start/End: Original strand, 21273310 - 21273675
Alignment:
| Q |
634 |
ttaaaagttatttttaattcaataaaatgattattaacctagctacctttgagtttatttgtgcataaaaggaagttagaaattacagtattactatctt |
733 |
Q |
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| T |
21273310 |
ttaaaagttatttttaattcaataaaatgattattaacctagctacctttgagtttatttgtgcataaaaggaagttagaaattacaatattactatctt |
21273409 |
T |
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| Q |
734 |
tt-acgagattgagctggattgtttgggttgcatgtgctaaatcatgatgactatatatatgcattggactttatgcatggaatatgtctttggttgtgc |
832 |
Q |
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| T |
21273410 |
tttacgagattgagctggattgtttgggttgcatgtgctaaatcatgatgactata----tgcattggactttatgcatggaatatgtctttggttgtgc |
21273505 |
T |
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| Q |
833 |
atgatatgatgcctatgcatgaccacaccacacaatgcactcaaagccccttgatttttcctctgcctttgggaaagaaacaataactttcataaaggaa |
932 |
Q |
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| T |
21273506 |
atgatatgatgcctatgcatgaccacaccacacaatgcactcaaagccccttgatttttcctctgcctttgggaaagaaacaataactttcataaaggaa |
21273605 |
T |
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| Q |
933 |
gggaaaagccaaaactagtgcaacattgtattgagaaagacactgactgcttcttcactcacgattc-aaatctgatgga |
1011 |
Q |
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| T |
21273606 |
gggaaaagccaaca----------attgtattgagaaagacacagactgcttcttcactcacgattcaaaatctgatgga |
21273675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 228 - 604
Target Start/End: Original strand, 21272927 - 21273313
Alignment:
| Q |
228 |
ttatagagatgacataatttattgtaatttgaattggacaatagtctttgcaataatcatgtggggatattcatttcaatatttagtcaaaatctgaatc |
327 |
Q |
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| T |
21272927 |
ttatagagatggcataatttattgtaatttgaattggacaatagtctttgcaataatcatgtggggctattcatttcaatatttagtcaaaatctgaatc |
21273026 |
T |
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| Q |
328 |
tatgatagttctaagcaattcccaagcgttacatcaaccatttacttatatggagtgaatggatggttcatataattgggttacatttacatataaacga |
427 |
Q |
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| T |
21273027 |
tatgatagttctaagcaatttccaagcgttacatcaaccatttacttatatggagtgaatggatggttcatataattgagttacatttacatataaacga |
21273126 |
T |
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| Q |
428 |
attttgcttaaaaactcattataaaaaatgttttaaaatattctcatgagtttatttcaggtattaaagacattacataatatatgtaaagttatgatac |
527 |
Q |
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| T |
21273127 |
attttgcttaaaaactcattataaaaaatgttttaaa--------atgtgtttatctcagatgatagagacattacataatacatgaagagttatgacat |
21273218 |
T |
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| Q |
528 |
ctt------------------agtgaatttttagccactaaacttcttaaaaaatgcttaaaaaagaattccttaactatcgtggttatatttaa |
604 |
Q |
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| T |
21273219 |
cttatttattcaccttataaaagtgaatttttagccactaaatttcttaaaaattacttaaaaaagaattcgttaactatcgtggttatatttaa |
21273313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 9e-70
Query Start/End: Original strand, 5 - 170
Target Start/End: Original strand, 21272703 - 21272869
Alignment:
| Q |
5 |
acaattacatatgatttgtaaatttaatatattcaagaccattgcgatttgcgacagtccaacacatttgagtatcaaaagacaaagccaacttttacta |
104 |
Q |
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| T |
21272703 |
acaattatatatgatttgtaaatttaatatattcaagaccattgcgatttgcgacagtccaacacatttgagtatcaaaagacaaagccaccgtttactc |
21272802 |
T |
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| Q |
105 |
tta-atactattatactggcaaatttgcttgatcctccgattgttaatgtggacaaatatcggatac |
170 |
Q |
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| T |
21272803 |
ttatatattattataccggcaaatttgcttgatcctccgattgttaatgtggacaaatatcggatac |
21272869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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