View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5017-Insertion-10 (Length: 348)
Name: NF5017-Insertion-10
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5017-Insertion-10 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 8 - 197
Target Start/End: Complemental strand, 41034176 - 41033975
Alignment:
| Q |
8 |
aattataggatagaacaattcttgattagagtgtatttacttcattgcagaaattcgaatcatcctagctcattttccctaagaacgagagggttgagaa |
107 |
Q |
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| T |
41034176 |
aattataggatagaacaattcttgattagagtgtatttgcttcattgcagaaattcgaatcatcatagctcattttccctaaggacgagagggttgagaa |
41034077 |
T |
|
| Q |
108 |
aatatatattaacattgaggagagtcctatctatct------------tactgcttatatactgttgctaacttattaagataatgtttggttaaggaat |
195 |
Q |
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| T |
41034076 |
aatatatattaacattgaggagagtcctatctatcttactatctatcttactgcttatatactgttgctaacttattaagataatgtttggttaaggaat |
41033977 |
T |
|
| Q |
196 |
gg |
197 |
Q |
| |
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|| |
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|
| T |
41033976 |
gg |
41033975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 41033691 - 41033649
Alignment:
| Q |
254 |
tcgacatgtatttaagtaacaagttgtcaaaaaatcatatatt |
296 |
Q |
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|
| T |
41033691 |
tcgacatatatttaagtaacaagttgtcaaaaaatcatatatt |
41033649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 41030034 - 41029996
Alignment:
| Q |
114 |
tattaacattgaggagagtcctatctatcttactgctta |
152 |
Q |
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||||| ||||||||||||||||||||||||||| ||||| |
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| T |
41030034 |
tattagcattgaggagagtcctatctatcttacagctta |
41029996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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