View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5017-Insertion-11 (Length: 337)
Name: NF5017-Insertion-11
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5017-Insertion-11 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 1636953 - 1636703
Alignment:
| Q |
8 |
cttcgcttctctcttggtcgttatgtagagtgatgcagaaaacacaatgtttaatagtctatgcattttaattgtaataatacatgaagagaaaggtgga |
107 |
Q |
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| T |
1636953 |
cttcgcttctctcttggtcgttatgtagagtgatgcagaaaacacaatgtttaatagtctatgcattttaattgtaataatacacgaagaggaaggtgga |
1636854 |
T |
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| Q |
108 |
tcctttaaatnnnnnnntaagaaaaagcacaaactagggcttgttgttattgaaactatttgtcaattacatcaaagtctagtttgttttagtattcgtg |
207 |
Q |
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| T |
1636853 |
tcctttaaataaaaaaataaaaaaaagcacaagctagggcttgttgttattgaaactatttgtcaattacatcaaagtctagtttgttttagtattcgtg |
1636754 |
T |
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| Q |
208 |
acggtttaatggaaaaaatatatatgatatgatcatatatttggattgagg |
258 |
Q |
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| T |
1636753 |
acggtttaatggaaaaaatatatatgatatgatcatatatttggattgagg |
1636703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 1612250 - 1612189
Alignment:
| Q |
40 |
atgcagaaaacacaatgtttaatagtctatgcattttaattgtaataatacatgaagagaaaggt |
104 |
Q |
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| T |
1612250 |
atgcagaaaacataatgtttaagagtgtatacattttaatt---ataatacatgaagaggaaggt |
1612189 |
T |
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