View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5017-Insertion-13 (Length: 189)
Name: NF5017-Insertion-13
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5017-Insertion-13 |
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Alignment Details
Target: chr1 (Bit Score: 94; Significance: 4e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 35167651 - 35167502
Alignment:
| Q |
8 |
attcactccaattttaactttcttacttagtcttctacatcaatctatttcttgagtgcttattctttctctatatctctacttcgttttcaatgttttt |
107 |
Q |
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| T |
35167651 |
attcactccaattttaactttcttacttattcttctatatcac-ctatttctttat--ctcatcatttctctatatctctacttcgttttcaatgttttc |
35167555 |
T |
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| Q |
108 |
gttcaaattttgtatagataattcatagatgaaattatgtgttaatttttctt |
160 |
Q |
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| T |
35167554 |
gttcaaattttgtgtagataattcatagatgaaattatgtgttaatttttctt |
35167502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 9e-41
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 12228235 - 12228377
Alignment:
| Q |
8 |
attcactccaattttaactttcttacttagtcttctacatcaatctatttcttgagtgcttattctttctctatatctctacttcgttttcaatgttttt |
107 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||| |||||||| | || ||| ||||||||||||||||||||||||||||||||||| |
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| T |
12228235 |
attcagtccaattttaactttcttacttattcttctacatc----tatttctttat--ctcattttttctctatatctctacttcgttttcaatgttttt |
12228328 |
T |
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| Q |
108 |
gttcaaattttgtatagataattcatagatgaaattatgtgttaatttt |
156 |
Q |
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| T |
12228329 |
gttcaaattttatgtagataattcatagatgaaattacgtgttaatttt |
12228377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 45099853 - 45099999
Alignment:
| Q |
8 |
attcactccaattttaactttcttacttagtcttctacatcaatctatttcttgagtgcttattctttctctatatctctacttcgttttcaatgttttt |
107 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||| || ||||| | || ||||||||||||||||||||||||||||||||||||||| |
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| T |
45099853 |
attcagtccaattttaactttcttacttattcttctacatctatttatttat------ctcattctttctctatatctctacttcgttttcaatgttttt |
45099946 |
T |
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| Q |
108 |
gttcaaattttgtatagataattcatagatgaaattatgtgttaatttttctt |
160 |
Q |
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||||||||||| | |||||||||||||||||||||| ||||||||||||||| |
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| T |
45099947 |
gttcaaattttatgtagataattcatagatgaaattgcgtgttaatttttctt |
45099999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 17898583 - 17898536
Alignment:
| Q |
115 |
ttttgtatagataattcatagatgaaat--tatgtgttaatttttctt |
160 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
17898583 |
ttttgtgtagataattcatagatgaaattatatgtgttaatttttctt |
17898536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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