View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5017-Insertion-2 (Length: 1090)

Name: NF5017-Insertion-2
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5017-Insertion-2
NF5017-Insertion-2
[»] chr1 (15 HSPs)
chr1 (7-394)||(31034856-31035250)
chr1 (72-394)||(31027961-31028280)
chr1 (532-738)||(31028448-31028652)
chr1 (532-738)||(31035418-31035622)
chr1 (759-880)||(31028726-31028847)
chr1 (759-880)||(31035696-31035817)
chr1 (468-685)||(31034252-31034465)
chr1 (468-737)||(31027293-31027563)
chr1 (890-995)||(31028886-31028995)
chr1 (890-995)||(31035856-31035965)
chr1 (463-520)||(31028366-31028423)
chr1 (463-520)||(31035336-31035393)
chr1 (532-694)||(46651472-46651633)
chr1 (759-825)||(31037166-31037232)
chr1 (532-694)||(46652568-46652729)
[»] chr2 (4 HSPs)
chr2 (37-298)||(13435188-13435442)
chr2 (532-694)||(20588246-20588407)
chr2 (638-687)||(44095473-44095522)
chr2 (551-620)||(44097158-44097226)
[»] chr5 (3 HSPs)
chr5 (638-742)||(33737734-33737837)
chr5 (532-694)||(42775531-42775692)
chr5 (555-738)||(37986309-37986490)
[»] chr7 (6 HSPs)
chr7 (532-682)||(39787957-39788106)
chr7 (532-679)||(25008208-25008354)
chr7 (532-694)||(28848665-28848826)
chr7 (532-646)||(28849765-28849878)
chr7 (532-646)||(25009272-25009385)
chr7 (532-694)||(43545453-43545614)
[»] chr3 (2 HSPs)
chr3 (532-694)||(8392590-8392751)
chr3 (532-643)||(45982596-45982706)
[»] scaffold0472 (2 HSPs)
scaffold0472 (532-694)||(9131-9292)
scaffold0472 (532-694)||(10233-10394)
[»] scaffold0369 (1 HSPs)
scaffold0369 (532-679)||(8066-8213)
[»] chr4 (1 HSPs)
chr4 (532-694)||(39928044-39928205)
[»] chr6 (1 HSPs)
chr6 (604-737)||(31994753-31994885)


Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 394
Target Start/End: Original strand, 31034856 - 31035250
Alignment:
Q  7 attatgggttcttcaatttcagaggaagttgttgttgtgagttcgattgagagatggatgatgtatggtgatggaaagaggttgtggtgaggttgttgat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31034856 attatgggttcttcaatttcagaggaagttgttgttgtgagttcgattgagagatggatgatgtatggtgatggaaagaggttgtggtgaggttgttgat 31034955  T
Q  107 ggtgtgtggaccgtgtaatttttccatatttgtgttgaagataaagaatggtaatttcatctggagagagaaaggctttcactcgattgaagatttgttg 206  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31034956 ggtgtgtggaccgtgtaattttttcatatttgtgttgaagataaagaagggtaatttcatccggagagagaaaggctttcactcgattgaagatttgttg 31035055  T
Q  207 ttgttgtgagtgtgtagttaacaatcatgtttaagccgtaaccgtgaaattgtccacaattaactccacaacacatgaggtatcaaagacaactagatga 306  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31035056 ttgttgtgagtgtgtagttaacaatcatgtttaagtcgtaaccgtg-aattgtccacaattaactccacaacacatgaggtatcaaagacaactagatga 31035154  T
Q  307 acaagaggtatagattcctggtgaatgatg--------aatttgttgcagaccatgaatttctattattgagagttgagatttctgggttggattg 394  Q
    |||||||||| | |||||||||||||||||        ||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||    
T  31035155 acaagaggtacaaattcctggtgaatgatgaatttgttaatttgttgcagatcatgaatttctattattgagagttggtatttctgggttggattg 31035250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 72 - 394
Target Start/End: Original strand, 31027961 - 31028280
Alignment:
Q  72 tggtgatggaaagaggttgtggtgaggttgttgatggtgtgtggaccgtgtaatttttccatatttgtgttgaagataaagaatggtaatttcatctgga 171  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  31027961 tggtgatggaaataggttgtggtgaggttgttgatggtgtgtggaccacgtaatttttccatatttgtgttgaagataaagaattgtaatttcatccgga 31028060  T
Q  172 gagagaaaggctttcactcgattgaagatttgttgttgttgtgagtgtgtagttaacaatcatgtttaagccgtaaccgtgaaattgtccacaattaact 271  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31028061 gaga--aaggctttcactcgattgaagatttgttgttgttgtgagtgtgtagttaacaatcatgtttaagccgtaaccgtgaa-ttgtccacaattaact 31028157  T
Q  272 ccacaacacatgaggtatcaaagacaactagatgaacaagaggtatagattcctggtgaatgatgaatttgttgcagaccatgaatttctattattgaga 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31028158 ccacaacacatgaggtatcaaagacaactagatgaacaagaggtacagattcctggtgaatgatgaatttgttgcagatcatgaatttctattattgaga 31028257  T
Q  372 gttgagatttctgggttggattg 394  Q
    |||| ||||||||||||||||||    
T  31028258 gttgggatttctgggttggattg 31028280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 532 - 738
Target Start/End: Original strand, 31028448 - 31028652
Alignment:
Q  532 aatttcatccttctgcacatttgcgtttttggttttggtccattcgtttctagccacttgtcatctctaagtacacataagcctgtttttgccaactgac 631  Q
    |||||||||| ||||||||||||| |||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||||| ||    
T  31028448 aatttcatccctctgcacatttgcatttttggttttggtccatccgttt-tagccacgtgtcatctctaagtacacataagcctgtttttaccaactcac 31028546  T
Q  632 atttcaccacgtgtgactttgtttgtcaacaaagcatttttgtaacggaagttaactggaggggattgaaagcaaacggttaacaagttacaaggatggt 731  Q
    ||||||||||||| | || ||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||    
T  31028547 atttcaccacgtgcggctctgtttgtcaacaaagcatttttgtaacggaagttaaccgga-gggattaaaagcaaacggttaacaagttacaaggatggt 31028645  T
Q  732 tttgaaa 738  Q
    |||||||    
T  31028646 tttgaaa 31028652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 532 - 738
Target Start/End: Original strand, 31035418 - 31035622
Alignment:
Q  532 aatttcatccttctgcacatttgcgtttttggttttggtccattcgtttctagccacttgtcatctctaagtacacataagcctgtttttgccaactgac 631  Q
    |||||||||| ||||||||||||| |||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||||| ||    
T  31035418 aatttcatccctctgcacatttgcatttttggttttggtccatccgttt-tagccacgtgtcatctctaagtacacataagcctgtttttaccaactcac 31035516  T
Q  632 atttcaccacgtgtgactttgtttgtcaacaaagcatttttgtaacggaagttaactggaggggattgaaagcaaacggttaacaagttacaaggatggt 731  Q
    ||||||||||||| | || ||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||    
T  31035517 atttcaccacgtgcggctctgtttgtcaacaaagcatttttgtaacggaagttaaccgga-gggattaaaagcaaacggttaacaagttacaaggatggt 31035615  T
Q  732 tttgaaa 738  Q
    |||||||    
T  31035616 tttgaaa 31035622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 759 - 880
Target Start/End: Original strand, 31028726 - 31028847
Alignment:
Q  759 tattttatatcatgtgcttttttatactctacgaacattttatgaaataaaatttaaaattattctccaattactctcggcaaatattttttactatgat 858  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||| ||||||||||||||||||||    
T  31028726 tattttatatcatgtgctcttttatactctacgaacattttatgaaatacactttaaaattaatctccaattactctcgccaaatattttttactatgat 31028825  T
Q  859 atttgtacgaaatttttacttc 880  Q
    ||| ||||||||||||||||||    
T  31028826 attagtacgaaatttttacttc 31028847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 759 - 880
Target Start/End: Original strand, 31035696 - 31035817
Alignment:
Q  759 tattttatatcatgtgcttttttatactctacgaacattttatgaaataaaatttaaaattattctccaattactctcggcaaatattttttactatgat 858  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||| ||||||||||||||||||||    
T  31035696 tattttatatcatgtgctcttttatactctacgaacattttatgaaatacactttaaaattaatctccaattactctcgccaaatattttttactatgat 31035795  T
Q  859 atttgtacgaaatttttacttc 880  Q
    ||| ||||||||||||||||||    
T  31035796 attagtacgaaatttttacttc 31035817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 468 - 685
Target Start/End: Complemental strand, 31034465 - 31034252
Alignment:
Q  468 ggatgaagaacatgaaatctcttgtttttagatttcaaa-ttttgatgtttaagnnnnnnnnnnnaatttcatccttctgcacatttgcgtttttggttt 566  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||| |           |||||||||||||||||||||| ||||||||||||    
T  31034465 ggatgaagaagatgaaatctcttgtttttagatttcaaaattttgatgtttacggtttttt----aatttcatccttctgcacatttacgtttttggttt 31034370  T
Q  567 tggtccattcgtttctagccacttgtcatctctaagtacacataagcctgtttttgccaactgacatttcaccacgtgtgactttgtttgtcaacaaagc 666  Q
    |||||| | | || ||||| ||||||||||||| |||||||||||||||||||||||||||| |||| || | |  |||||||   ||||| | ||||||    
T  31034369 tggtccctccatt-ctagcgacttgtcatctcttagtacacataagcctgtttttgccaactcacatctcgcaaactgtgactccatttgttatcaaagc 31034271  T
Q  667 atttttgtaacggaagtta 685  Q
    ||||||||||| |||||||    
T  31034270 atttttgtaacagaagtta 31034252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 468 - 737
Target Start/End: Complemental strand, 31027563 - 31027293
Alignment:
Q  468 ggatgaagaacatgaaatctcttgtttttagatttcaaa-ttttgatgtttaagnnnnnnnnnnnaatttcatccttctgcacatttgcgtttttggttt 566  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||| |           |||||||||| | ||||||||| ||||||||||||    
T  31027563 ggatgaagaagatgaaatctcttgtttttagatttcaaaattttgatgtttacggtttttt----aatttcatccatgtgcacatttacgtttttggttt 31027468  T
Q  567 tggtc-----cattcgtttctagccacttgtcatctctaagtacacataagcctgtttttgccaactgacatttcaccacgtgtgactttgtttgtcaac 661  Q
    ||||      |  ||  |||||| |||||||||||||| | ||||||||||| |||||||||||||| |||| || |||| |||||||   ||||  | |    
T  31027467 tggttttggtccctccattctaggcacttgtcatctcttaatacacataagcttgtttttgccaactcacatctcgccacctgtgactccatttgctatc 31027368  T
Q  662 aaagcatttttgtaacggaagttaactggaggggattgaaagcaaacggttaacaagttacaaggatggttttgaa 737  Q
    ||||||||||| |||| ||||||||| ||| | || | ||||||||||||||||||||| ||| ||||||||||||    
T  31027367 aaagcatttttttaacagaagttaacggga-gtgactaaaagcaaacggttaacaagttgcaatgatggttttgaa 31027293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 890 - 995
Target Start/End: Original strand, 31028886 - 31028995
Alignment:
Q  890 tgattaatctatgtcgggtaggtcacgcccaagggggctggtcactaaagca--gggttttaggctcttaaattttat-atattaaaatgga--taagtg 984  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||  |||||||||||||||||||||||| |||||||||||||   |||||    
T  31028886 tgattaatctatgtcgggtaggtcacgaccaagggggct-gtcactaaagcaaggggttttaggctcttaaattttataatattaaaatggaataaagtg 31028984  T
Q  985 tttattaaggg 995  Q
    |||||||||||    
T  31028985 tttattaaggg 31028995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 890 - 995
Target Start/End: Original strand, 31035856 - 31035965
Alignment:
Q  890 tgattaatctatgtcgggtaggtcacgcccaagggggctggtcactaaagca--gggttttaggctcttaaattttat-atattaaaatgga--taagtg 984  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||  |||||||||||||||||||||||| |||||||||||||   |||||    
T  31035856 tgattaatctatgtcgggtaggtcacgaccaagggggct-gtcactaaagcaaggggttttaggctcttaaattttataatattaaaatggaataaagtg 31035954  T
Q  985 tttattaaggg 995  Q
    |||||||||||    
T  31035955 tttattaaggg 31035965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 31028366 - 31028423
Alignment:
Q  463 caaaaggatgaagaacatgaaatctcttgtttttagatttcaaattttgatgtttaag 520  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31028366 caaaaggatgaagaagatgaaatctcttgtttttagatttcaaattttgatgtttaag 31028423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 463 - 520
Target Start/End: Original strand, 31035336 - 31035393
Alignment:
Q  463 caaaaggatgaagaacatgaaatctcttgtttttagatttcaaattttgatgtttaag 520  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31035336 caaaaggatgaagaagatgaaatctcttgtttttagatttcaaattttgatgtttaag 31035393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 532 - 694
Target Start/End: Complemental strand, 46651633 - 46651472
Alignment:
Q  532 aatttcatccttctgcacatttgcgtttttggttttggtccattcgtttctagccacttgtcatctctaagtacacataagcctgtttttgccaactgac 631  Q
    |||||||||| ||||||  |||||| |||||||||||||||  || ||||||||||||  ||||||||    ||||||||||  | ||||||||||| ||    
T  46651633 aatttcatccctctgcaattttgcgcttttggttttggtcc-ctcctttctagccactcatcatctctcttgacacataagcaagcttttgccaactcac 46651535  T
Q  632 atttcaccacgtgtgactttgtttgtcaacaaagcatttttgtaacggaagttaactggaggg 694  Q
    | ||||||||||||| ||  || || || || | | |||||||||||| ||||||| ||||||    
T  46651534 acttcaccacgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggaggg 46651472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 759 - 825
Target Start/End: Original strand, 31037166 - 31037232
Alignment:
Q  759 tattttatatcatgtgcttttttatactctacgaacattttatgaaataaaatttaaaattattctc 825  Q
    |||||||||||||||||| ||  | |||||| |||||||||||||| || | |||||||||||||||    
T  31037166 tattttatatcatgtgctcttgaaaactctatgaacattttatgaattacactttaaaattattctc 31037232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 532 - 694
Target Start/End: Original strand, 46652568 - 46652729
Alignment:
Q  532 aatttcatccttctgcacatttgcgtttttggttttggtccattcgtttctagccacttgtcatctctaagtacacataagcctgtttttgccaactgac 631  Q
    |||||||||| ||||||  ||||||||||||||||||||||  || |||||| |||||  ||||||||    ||||||||||  | ||||||||||| ||    
T  46652568 aatttcatccctctgcaattttgcgtttttggttttggtcc-ctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcac 46652666  T
Q  632 atttcaccacgtgtgactttgtttgtcaacaaagcatttttgtaacggaagttaactggaggg 694  Q
    | ||| || |||||| ||  || || || || | | |||||||||||| ||||||| ||||||    
T  46652667 acttcgccgcgtgtgtctccgtctgccaccataacgtttttgtaacgggagttaacgggaggg 46652729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 8e-67; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 37 - 298
Target Start/End: Complemental strand, 13435442 - 13435188
Alignment:
Q  37 gttgttgtgagttcgattgagagatggatgatgtatggtgatggaaagaggttgtggtgaggttgttgatggtgtgtggaccgtgtaat-ttttccatat 135  Q
    |||||||| | ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  13435442 gttgttgtcaattcgattgagagatggatgatgt-tggtgatggaa-gaggttgtggtgaggttgttgatggtgtgtggaccgtgtaattttttccagat 13435345  T
Q  136 ttgtgttgaagataaagaatggtaatttcatctggagagagaaaggctttcactcgattgaagatttgttgttgttgtgagtgtgtagttaacaatcatg 235  Q
    ||||||||||||||||||| |||||||| |||   ||||  |||| ||||||||||||||||||    ||||||||||||||||||||||||||||||||    
T  13435344 ttgtgttgaagataaagaagggtaattttatc--cagaggaaaagactttcactcgattgaaga---attgttgttgtgagtgtgtagttaacaatcatg 13435250  T
Q  236 tttaagccgtaaccgtgaaattgtccacaattaactccacaacacatgaggtatcaaagacaa 298  Q
    |||||||| |||  ||| |||||||  |||||| ||| |||||||| ||||||||||| ||||    
T  13435249 tttaagccataatagtg-aattgtctgcaattagctctacaacacaagaggtatcaaaaacaa 13435188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 532 - 694
Target Start/End: Original strand, 20588246 - 20588407
Alignment:
Q  532 aatttcatccttctgcacatttgcgtttttggttttggtccattcgtttctagccacttgtcatctctaagtacacataagcctgtttttgccaactgac 631  Q
    |||||||||| ||||||  |||||| |||||||||||||||  || ||||||||||||  ||||||||    ||||||||||  | ||||||||||| ||    
T  20588246 aatttcatccctctgcaattttgcgcttttggttttggtcc-ctcctttctagccactcatcatctctcttgacacataagcaagcttttgccaactcac 20588344  T
Q  632 atttcaccacgtgtgactttgtttgtcaacaaagcatttttgtaacggaagttaactggaggg 694  Q
    | ||||||||||||| ||  || || || || | | |||||||||||| ||||||| ||||||    
T  20588345 acttcaccacgtgtgtctacgtctgccaccacaacgtttttgtaacgggagttaacgggaggg 20588407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 638 - 687
Target Start/End: Complemental strand, 44095522 - 44095473
Alignment:
Q  638 ccacgtgtgactttgtttgtcaacaaagcatttttgtaacggaagttaac 687  Q
    ||||||||||||   |||| ||||||||| ||||||||||||||||||||    
T  44095522 ccacgtgtgactccatttgccaacaaagcgtttttgtaacggaagttaac 44095473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 551 - 620
Target Start/End: Original strand, 44097158 - 44097226
Alignment:
Q  551 tttgcgtttttggttttggtccattcgtttctagccacttgtcatctctaagtacacataagcctgtttt 620  Q
    |||||||||||||||||||||| |||   ||||| ||||| |||||| | ||||||||||||| ||||||    
T  44097158 tttgcgtttttggttttggtcc-ttcaaatctagtcacttatcatctgtcagtacacataagcgtgtttt 44097226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 4e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 638 - 742
Target Start/End: Complemental strand, 33737837 - 33737734
Alignment:
Q  638 ccacgtgtgactttgtttgtcaacaaagcatttttgtaacggaagttaactggaggggattgaaagcaaacggttaacaagttacaaggatggttttgaa 737  Q
    |||| ||||||| |||||| || |||||| |||||||||| ||||| ||  |||||| | | |||||||| |||||||||||||||||| ||||||||||    
T  33737837 ccacatgtgactctgtttgccagcaaagcgtttttgtaacagaagtcaatgggaggg-actaaaagcaaaaggttaacaagttacaagggtggttttgaa 33737739  T
Q  738 agaaa 742  Q
    |||||    
T  33737738 agaaa 33737734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 532 - 694
Target Start/End: Complemental strand, 42775692 - 42775531
Alignment:
Q  532 aatttcatccttctgcacatttgcgtttttggttttggtccattcgtttctagccacttgtcatctctaagtacacataagcctgtttttgccaactgac 631  Q
    |||||||||| ||||||  ||||||||||||||||||||||  || |||||| |||||  ||||||||    ||||||||||  | ||||||||||| ||    
T  42775692 aatttcatccctctgcaattttgcgtttttggttttggtcc-ctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcac 42775594  T
Q  632 atttcaccacgtgtgactttgtttgtcaacaaagcatttttgtaacggaagttaactggaggg 694  Q
    | ||| || |||||| ||  || || || || | | |||||||||||| ||||||| ||||||    
T  42775593 acttcgccgcgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggaggg 42775531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 555 - 738
Target Start/End: Original strand, 37986309 - 37986490
Alignment:
Q  555 cgtttttggttttggtccattcgtttctagccacttgtcatctctaagtacacataagcctgtttttgccaactgacatttcaccacgtgtgactttgtt 654  Q
    ||||||||||| |||||| | | ||||||||||||  ||||||||    ||| ||||||||||||||| ||||| ||  ||| ||| ||||| || |||     
T  37986309 cgtttttggttctggtccctcc-tttctagccactcatcatctctcttgacatataagcctgtttttgtcaactcacccttcgccatgtgtgtctctgtc 37986407  T
Q  655 tgtcaacaaagcatttttgtaacggaagttaactggaggggattgaaagcaaacggttaacaagttacaaggatggttttgaaa 738  Q
    || || || | | |||||||| ||| |||||| |||| |||| |||  |||||| |||||||| |||||| |||||||| ||||    
T  37986408 tgccaccacaacgtttttgtagcgggagttaagtgga-gggactgattgcaaacagttaacaacttacaatgatggtttagaaa 37986490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 532 - 682
Target Start/End: Original strand, 39787957 - 39788106
Alignment:
Q  532 aatttcatccttctgcacatttgcgtttttggttttggtccattcgtttctagccacttgtcatctctaagtacacataagcctgtttttgccaactgac 631  Q
    |||||||||| | ||||||||| ||||||||||||||||||  ||  ||||| |||||||||||||||   || |||||||  || ||||||||||| ||    
T  39787957 aatttcatccctgtgcacatttacgtttttggttttggtcc-ctccattctaaccacttgtcatctctcgatatacataagtttgattttgccaactcac 39788055  T
Q  632 atttcaccacgtgtgactttgtttgtcaacaaagcatttttgtaacggaag 682  Q
    | ||| ||||||| ||||   |||| || |||| | |||||||||||||||    
T  39788056 acttcgccacgtgcgactccatttgccatcaaatcgtttttgtaacggaag 39788106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 532 - 679
Target Start/End: Complemental strand, 25008354 - 25008208
Alignment:
Q  532 aatttcatccttctgcacatttgcgtttttggttttggtccattcgtttctagccacttgtcatctctaagtacacataagcctgtttttgccaactgac 631  Q
    |||||||||| ||||||  ||||||||||||||||||||||  || |||||| |||||  ||||||||    ||||||||||  | ||||||||||| ||    
T  25008354 aatttcatccctctgcaattttgcgtttttggttttggtcc-ctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcac 25008256  T
Q  632 atttcaccacgtgtgactttgtttgtcaacaaagcatttttgtaacgg 679  Q
    | ||| ||||||||| ||| || || || || | | ||||||||||||    
T  25008255 acttcgccacgtgtgtcttcgtctgccaccacaacgtttttgtaacgg 25008208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 532 - 694
Target Start/End: Complemental strand, 28848826 - 28848665
Alignment:
Q  532 aatttcatccttctgcacatttgcgtttttggttttggtccattcgtttctagccacttgtcatctctaagtacacataagcctgtttttgccaactgac 631  Q
    |||||||||| ||||||  ||||||||||||||||||||||  || |||||| |||||  ||||||||    ||||||||||  | ||||||||||| ||    
T  28848826 aatttcatccctctgcaattttgcgtttttggttttggtcc-ctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcac 28848728  T
Q  632 atttcaccacgtgtgactttgtttgtcaacaaagcatttttgtaacggaagttaactggaggg 694  Q
    | ||| || |||||| ||  || || || || | | |||||||||||| ||||||| ||||||    
T  28848727 acttcgccgcgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggaggg 28848665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 532 - 646
Target Start/End: Original strand, 28849765 - 28849878
Alignment:
Q  532 aatttcatccttctgcacatttgcgtttttggttttggtccattcgtttctagccacttgtcatctctaagtacacataagcctgtttttgccaactgac 631  Q
    |||||||||| ||||||  |||||| |||||||||||||||  || |||||| |||||  ||||||||    ||||||||||  | ||||||||||| ||    
T  28849765 aatttcatccctctgcaattttgcgcttttggttttggtcc-ctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcac 28849863  T
Q  632 atttcaccacgtgtg 646  Q
    | |||||||||||||    
T  28849864 acttcaccacgtgtg 28849878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 532 - 646
Target Start/End: Original strand, 25009272 - 25009385
Alignment:
Q  532 aatttcatccttctgcacatttgcgtttttggttttggtccattcgtttctagccacttgtcatctctaagtacacataagcctgtttttgccaactgac 631  Q
    |||||||||| ||||||  |||||| |||||||||||||||  || |||||||||| |  ||||||||    ||||||||||  | ||||||||||| ||    
T  25009272 aatttcatccctctgcaattttgcgcttttggttttggtcc-ctcctttctagccattcatcatctctcctgacacataagcaagcttttgccaactcac 25009370  T
Q  632 atttcaccacgtgtg 646  Q
    | ||||||| |||||    
T  25009371 acttcaccatgtgtg 25009385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 532 - 694
Target Start/End: Complemental strand, 43545614 - 43545453
Alignment:
Q  532 aatttcatccttctgcacatttgcgtttttggttttggtccattcgtttctagccacttgtcatctctaagtacacataagcctgtttttgccaactgac 631  Q
    |||||||||| ||||||  |||||| ||||||||||| |||  || ||||||||||||  ||||||||    |||||||||   | ||||||||||| ||    
T  43545614 aatttcatccctctgcaattttgcgcttttggttttgatcc-ctcctttctagccactcatcatctctcttgacacataaggaagcttttgccaactcac 43545516  T
Q  632 atttcaccacgtgtgactttgtttgtcaacaaagcatttttgtaacggaagttaactggaggg 694  Q
    | |||||||| |||| ||  || || || || | | |||||||||||| ||||||| ||||||    
T  43545515 acttcaccacatgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggaggg 43545453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 532 - 694
Target Start/End: Original strand, 8392590 - 8392751
Alignment:
Q  532 aatttcatccttctgcacatttgcgtttttggttttggtccattcgtttctagccacttgtcatctctaagtacacataagcctgtttttgccaactgac 631  Q
    |||||||||| ||||||  |||||| |||||||||||||||  || ||||||||||||  ||||||||    ||||||||||  | ||||||||||| ||    
T  8392590 aatttcatccctctgcaattttgcgcttttggttttggtcc-ctcttttctagccactcatcatctctcttgacacataagcaagcttttgccaactcac 8392688  T
Q  632 atttcaccacgtgtgactttgtttgtcaacaaagcatttttgtaacggaagttaactggaggg 694  Q
    |  |||||||||||| ||  || || || || | | |||||||||||| ||||||| ||||||    
T  8392689 acctcaccacgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggaggg 8392751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 532 - 643
Target Start/End: Original strand, 45982596 - 45982706
Alignment:
Q  532 aatttcatccttctgcacatttgcgtttttggttttggtccattcgtttctagccacttgtcatctctaagtacacataagcctgtttttgccaactgac 631  Q
    |||||||||| ||||||  |||||| |||||||||||||||  || ||||||||||||  ||||||||    ||||||||||  | ||||||||||| ||    
T  45982596 aatttcatccctctgcaattttgcgcttttggttttggtcc-ctcatttctagccactcatcatctctcttgacacataagcaagcttttgccaactcac 45982694  T
Q  632 atttcaccacgt 643  Q
    | ||||||||||    
T  45982695 acttcaccacgt 45982706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 532 - 694
Target Start/End: Complemental strand, 9292 - 9131
Alignment:
Q  532 aatttcatccttctgcacatttgcgtttttggttttggtccattcgtttctagccacttgtcatctctaagtacacataagcctgtttttgccaactgac 631  Q
    |||||||||| | ||||  |||||| ||||||||||||||  | | |||||||||| |  ||||||||    ||||||||||  | ||||||||||| ||    
T  9292 aatttcatccctatgcaattttgcgcttttggttttggtctctcc-tttctagccattcatcatctctcttgacacataagcaagcttttgccaactcac 9194  T
Q  632 atttcaccacgtgtgactttgtttgtcaacaaagcatttttgtaacggaagttaactggaggg 694  Q
    | ||||||||||||| || ||| || || || | | |||||||||||| ||||||| ||||||    
T  9193 acttcaccacgtgtgtctctgtctgccaccacaacgtttttgtaacgggagttaacgggaggg 9131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 532 - 694
Target Start/End: Original strand, 10233 - 10394
Alignment:
Q  532 aatttcatccttctgcacatttgcgtttttggttttggtccattcgtttctagccacttgtcatctctaagtacacataagcctgtttttgccaactgac 631  Q
    |||||||| | ||||||  ||||||||||||||||||||||  || |||||| |||||  ||||||||    ||||||||||  | ||||| ||||| ||    
T  10233 aatttcattcctctgcaattttgcgtttttggttttggtcc-ctcctttctaaccactcatcatctctcttgacacataagcaagcttttgtcaactcac 10331  T
Q  632 atttcaccacgtgtgactttgtttgtcaacaaagcatttttgtaacggaagttaactggaggg 694  Q
    | ||| ||||||||| ||  || || || || | | |||||||||||| ||||||| ||||||    
T  10332 acttcgccacgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggaggg 10394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 532 - 679
Target Start/End: Original strand, 8066 - 8213
Alignment:
Q  532 aatttcatccttctgcacatttgcgtttttggttttggtccattcgtttctagccacttgtcatctctaagtacacataagcctg-tttttgccaactga 630  Q
    |||||||||| ||||||  |||||| |||||||||||||||  || ||||||||||||  ||||||||    ||||||||||  | ||||| |||||| |    
T  8066 aatttcatccctctgcaattttgcgcttttggttttggtcc-ctcctttctagccactcatcatctctcttgacacataagcaagcttttttccaactca 8164  T
Q  631 catttcaccacgtgtgactttgtttgtcaacaaagcatttttgtaacgg 679  Q
    || ||||||||||||| || ||| || || || | | ||||||||||||    
T  8165 cacttcaccacgtgtgtctctgtctgccaccacaacgtttttgtaacgg 8213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 532 - 694
Target Start/End: Complemental strand, 39928205 - 39928044
Alignment:
Q  532 aatttcatccttctgcacatttgcgtttttggttttggtccattcgtttctagccacttgtcatctctaagtacacataagcctgtttttgccaactgac 631  Q
    |||||||||| ||||||  |||||| ||||||||||| |||  || |||||||||||   ||||||||    ||||||||||  | ||||||||||| ||    
T  39928205 aatttcatccctctgcaattttgcgcttttggttttgatcc-ctcctttctagccacgcatcatctctcttgacacataagcaagcttttgccaactcac 39928107  T
Q  632 atttcaccacgtgtgactttgtttgtcaacaaagcatttttgtaacggaagttaactggaggg 694  Q
    | |||||||| |||| ||  || || || || | | |||||||||||| ||||||| ||||||    
T  39928106 acttcaccacatgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggaggg 39928044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 604 - 737
Target Start/End: Complemental strand, 31994885 - 31994753
Alignment:
Q  604 acacataagcctgtttttgccaactgacatttcaccacgtgtgactttgtttgtcaacaaagcatttttgtaacggaagttaactggaggggattgaaag 703  Q
    ||||||||||||| ||||||||||| ||  ||| |||||| |  |||||| || || ||   ||||||||||||||  |||||| |||||| | | |  |    
T  31994885 acacataagcctgcttttgccaactcacccttcgccacgtctttctttgtctgccaccactacatttttgtaacgggtgttaacgggaggg-actaattg 31994787  T
Q  704 caaacggttaacaagttacaaggatggttttgaa 737  Q
    |||| ||||||||| ||| |||||||||||||||    
T  31994786 caaatggttaacaacttataaggatggttttgaa 31994753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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