View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5017-Insertion-3 (Length: 1060)
Name: NF5017-Insertion-3
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5017-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 744; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 744; E-Value: 0
Query Start/End: Original strand, 6 - 785
Target Start/End: Original strand, 36784882 - 36785661
Alignment:
| Q |
6 |
caaaaattgcagccaaccttgctaaagatttcattgcaaagtcaattacatttgaaaacactgcgggccatgaagctggcccatcagtggcacttcaagt |
105 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36784882 |
caaaaattgcagccaaccttgctaaagatttcattgcgaagtcaattacatttgaaaacactgcgggtcatgaagctggcccatcagtggcacttcaagt |
36784981 |
T |
|
| Q |
106 |
ggaaggtgatcgttcggcattctttgattgtggaatttatggttaccaagacacattgtatgcgcacaaacaacgccagttctaccgcaattgtgagatc |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36784982 |
ggaaggtgatcgttcggcattctttgattgtggaatttatggttatcaagacacattgtatgcgcacaaacagcgccagttctaccgcaattgtgagatc |
36785081 |
T |
|
| Q |
206 |
tctggaaccatcgatttcatctttgggcattcaactaccttaatccaaaactccaaaataattgcgaggaagccgagtccaggccatagcaacgttgtgg |
305 |
Q |
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| T |
36785082 |
tctggaaccattgatttcatctttgggcattcaactaccttaatccaaaactccaaaataattgtgaggaagccgagtccaggccatagcaacgttgtgg |
36785181 |
T |
|
| Q |
306 |
tggcagacggaacaaagcaaaagaatgccctaactggaatagtccttcaaaattgctcgatcatgccagatgttgaacttttacctgataggttgacagt |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36785182 |
tggcagacggaacaaagcaaaagaatgccctaactggaatagtccttcaaaattgctcgatcatgccagatgttgaacttttacctgataggttgacggt |
36785281 |
T |
|
| Q |
406 |
gaagacttatttggcaaggccatggaggtcattttctagggcaatatttattaataatgttataggtgattttattcaacctgatgggtattctgtttgg |
505 |
Q |
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| T |
36785282 |
gaagacttatttggcaaggccatggaggtcattttctagggcaatatttattaataatgttataggtgattttattcaacctgatgggtattctgtttgg |
36785381 |
T |
|
| Q |
506 |
gctcctaatgaaacaaacactgcacattgttactttgctgagtttggtaacactggacctggtgctaatactcaagctagggcaaaatggagtaaaggtg |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36785382 |
gctcctaatgaaacaaacactgcacattgttactttgctgagtttggtaacactggacctggtgctaatactcaagctagggcaaaatggagtaaaggtg |
36785481 |
T |
|
| Q |
606 |
ttattagtaaggatgaggctgctaaattcactgctgaaaattggcttcaagctagcatttggttgcctgccactggcattcctttcagtcctgaatttga |
705 |
Q |
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| T |
36785482 |
ttattagtaaggatgaggctgctaaattcactgctgaaaattggcttcaagctagcacttggttgcctgccactggcattcctttcagtcctgaatttga |
36785581 |
T |
|
| Q |
706 |
gtcttgaaattatgcatgcatgcatatatttatatattagtttacttttagtttttatactttgactagcatgaatagaa |
785 |
Q |
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| T |
36785582 |
gtcttgaaattatgcatgcatgcatatatttatatattagtttacttttagtttttatactttgacaagcatgaatagaa |
36785661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 965 - 1051
Target Start/End: Original strand, 36785890 - 36785973
Alignment:
| Q |
965 |
taatatttctatcaaaattgtttatccatcaatggaaataatataacatagtaactggtgtatgacctcgactctatatactataaa |
1051 |
Q |
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| T |
36785890 |
taatatttctatcaaaattgtttatccatcaat-aaaataatataacatagtaact-gtgtatga-ctcgactctatatactataaa |
36785973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 863 - 957
Target Start/End: Original strand, 36785752 - 36785848
Alignment:
| Q |
863 |
gtagaagtaataataacgattatttgggtgacatatttgt-tcgttcgtgattgaggtttgaaatatttgactttca-atgagatttatccttatac |
957 |
Q |
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||||||||||||||||||||||||| | |||| |||||| |||||||||||||||||||||||||||| ||||||| |||||||| ||||||||| |
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| T |
36785752 |
gtagaagtaataataacgattatttagttgacgtatttgcgtcgttcgtgattgaggtttgaaatatttaactttcatttgagatttgtccttatac |
36785848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 406 - 698
Target Start/End: Complemental strand, 36078894 - 36078602
Alignment:
| Q |
406 |
gaagacttatttggcaaggccatggaggtcattttctagggcaatatttattaataatgttataggtgattttattcaacctgatgggtattctgtttgg |
505 |
Q |
| |
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|||||||||||||||||| ||||||||| ||| ||| | |||||| |||||||| ||| |||| || ||||||||||||||||||||||| | ||||| |
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| T |
36078894 |
gaagacttatttggcaagaccatggaggccatattcaacggcaatctttattaacaattttatcggcaattttattcaacctgatgggtatacgatttgg |
36078795 |
T |
|
| Q |
506 |
gctcctaatgaaacaaacactgcacattgttactttgctgagtttggtaacactggacctggtgctaatactcaagctagggcaaaatggagtaaaggtg |
605 |
Q |
| |
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| || |||||| || | || ||| |||||||||||||| ||||||||||||||||| ||| || || ||||| | ||| |||||| |
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| T |
36078794 |
agagaagttcaaccaaacaatgaaaatgtttattttgctgagtttggcaacactggacctggtgccaatgctaaaaatagggtctattgggcaaaaggtc |
36078695 |
T |
|
| Q |
606 |
ttattagtaaggatgaggctgctaaattcactgctgaaaattggcttcaagctagcatttggttgcctgccactggcattcctttcagtcctg |
698 |
Q |
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|||||| | ||||||||||||| |||||| |||||| ||| |||||||||| | |||||| ||| || |||||||||||| || ||||| |
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| T |
36078694 |
ttattacaagagatgaggctgctagattcaccgctgaaccgtggattcaagctagtacttggttaccttccgctggcattccttacaatcctg |
36078602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 36079121 - 36079051
Alignment:
| Q |
182 |
cagttctaccgcaattgtgagatctctggaaccatcgatttcatctttgggcattcaactaccttaatcca |
252 |
Q |
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| T |
36079121 |
cagttttaccgcaattgtgtgatttctggaaccatcgacttcatatgtggtcactcgactaccttaatcca |
36079051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 36069729 - 36069652
Alignment:
| Q |
181 |
ccagttctaccgcaattgtgagatctctggaaccatcgatttcatctttgggcattcaactaccttaatccaaaactc |
258 |
Q |
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| T |
36069729 |
ccagttctaccgcaactgcaagacttatggaaccatcgactttatatatggtcattcaactaccttgatccaaaactc |
36069652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 51546888 - 51546840
Alignment:
| Q |
135 |
gtggaatttatggttaccaagacacattgtatgcgcacaaacaacgcca |
183 |
Q |
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| T |
51546888 |
gtggaattcatggttaccaagacacattgtatgtacacaaacaccgcca |
51546840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 40524991 - 40525078
Alignment:
| Q |
22 |
ccttgctaaagatttcattgcaaagtcaattacatttgaaaacactgcgggccatgaagctggcccatcagtggcacttcaagtggaa |
109 |
Q |
| |
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||||| ||||||||||||||| || ||||||||||| ||||||| | || |||||| || ||| ||| ||||||||||| |||||| |
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| T |
40524991 |
ccttggtaaagatttcattgccaaatcaattacattccaaaacaccgttggtcatgaaactagcctatcggtggcacttcacgtggaa |
40525078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 965 - 996
Target Start/End: Original strand, 50876935 - 50876966
Alignment:
| Q |
965 |
taatatttctatcaaaattgtttatccatcaa |
996 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
50876935 |
taatatttctatcaaaattgtttatccatcaa |
50876966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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