View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5017-Insertion-4 (Length: 1036)

Name: NF5017-Insertion-4
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5017-Insertion-4
NF5017-Insertion-4
[»] chr2 (21 HSPs)
chr2 (8-898)||(30730785-30731676)
chr2 (906-1010)||(30731967-30732072)
chr2 (936-1012)||(9026775-9026852)
chr2 (915-1012)||(8973280-8973378)
chr2 (915-1012)||(9023415-9023513)
chr2 (936-1008)||(8979311-8979384)
chr2 (936-1012)||(9032042-9032119)
chr2 (941-1020)||(32918074-32918155)
chr2 (940-1012)||(43850042-43850115)
chr2 (944-1012)||(9008018-9008087)
chr2 (906-1028)||(30733948-30734072)
chr2 (946-1012)||(2841058-2841125)
chr2 (936-1012)||(9020836-9020913)
chr2 (940-1008)||(8984686-8984755)
chr2 (936-1008)||(9030387-9030460)
chr2 (949-1007)||(19232445-19232504)
chr2 (915-1008)||(8988423-8988517)
chr2 (938-1012)||(8992139-8992214)
chr2 (954-1012)||(10763919-10763978)
chr2 (915-998)||(9016461-9016545)
chr2 (962-1012)||(6471750-6471799)
[»] chr1 (25 HSPs)
chr1 (8-898)||(14670148-14671035)
chr1 (8-625)||(14704968-14705584)
chr1 (8-624)||(14685278-14685883)
chr1 (906-1028)||(14669732-14669857)
chr1 (911-1028)||(14706052-14706172)
chr1 (903-1028)||(14674437-14674565)
chr1 (903-1028)||(14679815-14679943)
chr1 (903-1028)||(14681555-14681683)
chr1 (908-1010)||(14716252-14716355)
chr1 (908-1028)||(14654363-14654486)
chr1 (908-1028)||(14664154-14664277)
chr1 (908-1028)||(14708539-14708662)
chr1 (908-1028)||(14676593-14676716)
chr1 (908-1028)||(14683711-14683834)
chr1 (776-898)||(14676148-14676263)
chr1 (776-898)||(14683266-14683381)
chr1 (915-1012)||(28366240-28366338)
chr1 (935-1012)||(33988058-33988136)
chr1 (940-1012)||(38175571-38175644)
chr1 (908-1020)||(14652486-14652600)
chr1 (908-1020)||(14662277-14662391)
chr1 (906-1012)||(14667152-14667258)
chr1 (953-1012)||(37422175-37422235)
chr1 (950-1008)||(11872526-11872585)
chr1 (943-1008)||(28698549-28698615)
[»] chr8 (13 HSPs)
chr8 (8-247)||(24058990-24059229)
chr8 (914-1012)||(41841193-41841292)
chr8 (914-1012)||(44878950-44879049)
chr8 (914-1012)||(44880872-44880971)
chr8 (947-1012)||(40054312-40054378)
chr8 (944-1022)||(10944429-10944509)
chr8 (949-1012)||(37679757-37679821)
chr8 (947-1012)||(37682057-37682123)
chr8 (963-1012)||(44582870-44582919)
chr8 (914-1012)||(42220887-42220985)
chr8 (939-1008)||(42555128-42555198)
chr8 (940-989)||(42872514-42872564)
chr8 (936-1012)||(42092010-42092086)
[»] chr6 (4 HSPs)
chr6 (913-1012)||(10795931-10796031)
chr6 (913-1012)||(10791693-10791793)
chr6 (947-1020)||(30521242-30521317)
chr6 (962-1012)||(8875705-8875755)
[»] chr4 (11 HSPs)
chr4 (913-1012)||(50077240-50077340)
chr4 (913-1012)||(49106570-49106670)
chr4 (913-1012)||(49108674-49108774)
chr4 (934-1012)||(11652433-11652512)
chr4 (938-1012)||(3461183-3461258)
chr4 (948-1020)||(26984699-26984773)
chr4 (948-1020)||(26998772-26998846)
chr4 (948-1010)||(48205832-48205895)
chr4 (974-1012)||(21503706-21503744)
chr4 (913-997)||(49533682-49533765)
chr4 (949-1020)||(41013578-41013651)
[»] chr5 (4 HSPs)
chr5 (936-1012)||(1716493-1716570)
chr5 (940-1012)||(7524961-7525034)
chr5 (947-1012)||(3643640-3643706)
chr5 (951-1012)||(4103249-4103311)
[»] chr7 (1 HSPs)
chr7 (947-1012)||(27134511-27134577)
[»] chr3 (1 HSPs)
chr3 (949-994)||(15758562-15758608)


Alignment Details
Target: chr2 (Bit Score: 776; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 776; E-Value: 0
Query Start/End: Original strand, 8 - 898
Target Start/End: Original strand, 30730785 - 30731676
Alignment:
Q  8 cttccaacgcaacagatgaatttggcattgtgggcattaagttgcgataaaaagggtacctttcatgaaatgatggacccatatttgattggcaaagtga 107  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30730785 cttccaacgcaacagatgaatttggcattgcgggcattaagttgcgataaaaagggtacctttcatgaaatgatggacccatatttgattggcaaagtga 30730884  T
Q  108 atatggattctctaaacaaggctttagagttggcttggaagtgcttggaggagcgtcgggagaacagaccaccgatggggtatgtattatgtcaactaga 207  Q
    ||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30730885 atatggattctctaaacaaggttttatagttggcatggaagtgcttggaggagcgtcgggagaacagaccaccgatggggtatgtattatgtcaactaga 30730984  T
Q  208 agaggctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttctatacactccagt--aggaagtggatttacggatgaaattgaa 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  30730985 agaggctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttctattcactccagtgtaggaagtggatttacggatgaaattgaa 30731084  T
Q  306 gatgttgtttgaaaccatagcctcctaatttaacaactcatttgttaaagttggtcattttagtggtatcataattatatttattgnnnnnnntttagag 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       |||||||    
T  30731085 gatgttgtttgaaaccatagcctcctaatttaacaactcatttgttaaagttggtcattttagtggtatcataattgtatttattgaaaaaaatttagag 30731184  T
Q  406 tcaatatagtttcttaattcaacaaagcatagttttctaaaagtttttcgagtaaatatatttataacatgttttagtgaatttcaattcttgagatatg 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  30731185 tcaatatagtttcttaattcaacaaagcatagttttctaaaagtttttcgagtaaatatatttataatatgttttagtgaatttcaattattgagatatg 30731284  T
Q  506 tgattactgatagagatgggatattagtgaatttgtctaaagtcgaagcagaagtaggaaatccctaagacattaggtgggttatttagtttccttagtt 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30731285 tgattactgatagagatgggatattagtgaatttgtctaaagtcgaagcagaagtaggaaatccctaagacattaggtgggttatttagtttccttagtt 30731384  T
Q  606 tggcgggagattatcagagtgtttctccaaattgtgttgtatatgataggatgccattgacnnnnnnnttgtgttcaggagttgaagaggatgtttacca 705  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||| ||||| ||||||||||||||||||||||    
T  30731385 tggcgggagattatcagagtgtttctccaaattgtgttgtatatgataggatgccattgacggttgggttgggttcaagagttgaagaggatgtttacca 30731484  T
Q  706 tgttgccaacctaaggaccgactaatccgatggagcgatcctttgtctattgttcaggagttgaagaggatgtttcacatggtatgccataaataagttt 805  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30731485 tgttgccaacctaaggaccgactaatccgatggagcaatcctttgtctatggttcaggagttgaagaggatgtttcacatggtatgctataaataagttt 30731584  T
Q  806 gcaacttcagtgttgtgtatttgggtttaatagtagttataactcatcacatcacctttgggaaccaagacaagactgatctctgtgtgtagt 898  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30731585 gcaacttcagtgttgtgtattt-ggtttaatagtagttataactcatcacatcacctttgggaaccaagacaagactaatctctgtgtgtagt 30731676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 906 - 1010
Target Start/End: Original strand, 30731967 - 30732072
Alignment:
Q  906 acatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcgg-cttttggctaagatcaagtgtagtatctgttcttatcggttta 1004  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  30731967 acatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagttta 30732066  T
Q  1005 atatct 1010  Q
    ||||||    
T  30732067 atatct 30732072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 936 - 1012
Target Start/End: Original strand, 9026775 - 9026852
Alignment:
Q  936 catctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9026775 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 9026852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 915 - 1012
Target Start/End: Original strand, 8973280 - 8973378
Alignment:
Q  915 atataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    |||||||||||  | ||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||    
T  8973280 atataaaagcataagcgagttcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctga 8973378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 915 - 1012
Target Start/End: Original strand, 9023415 - 9023513
Alignment:
Q  915 atataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    |||||||||||  | |||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||    
T  9023415 atataaaagcataagcgagtccaactttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctga 9023513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 936 - 1008
Target Start/End: Original strand, 8979311 - 8979384
Alignment:
Q  936 catctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatat 1008  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  8979311 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatat 8979384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 936 - 1012
Target Start/End: Original strand, 9032042 - 9032119
Alignment:
Q  936 catctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  9032042 catctttcaactcatacctttctcggccttttggttaagatcaagtgtagtatctgttcttatcagtttaatatctga 9032119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 941 - 1020
Target Start/End: Original strand, 32918074 - 32918155
Alignment:
Q  941 ttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga-atgtggac 1020  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  32918074 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggac 32918155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 940 - 1012
Target Start/End: Original strand, 43850042 - 43850115
Alignment:
Q  940 tttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43850042 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 43850115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 944 - 1012
Target Start/End: Original strand, 9008018 - 9008087
Alignment:
Q  944 aactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9008018 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 9008087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 906 - 1028
Target Start/End: Original strand, 30733948 - 30734072
Alignment:
Q  906 acatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggttta 1004  Q
    ||||||| |||||||||||||||  || | ||| ||  |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  30733948 acatgtcagatataaaagcagcag-gatctcatgttgtaacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagttta 30734046  T
Q  1005 atatctga-atgtgga-caatggttc 1028  Q
    |||||||| ||||||| |||||||||    
T  30734047 atatctgatatgtggaccaatggttc 30734072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 946 - 1012
Target Start/End: Complemental strand, 2841125 - 2841058
Alignment:
Q  946 ctcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2841125 ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 2841058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 936 - 1012
Target Start/End: Original strand, 9020836 - 9020913
Alignment:
Q  936 catctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  9020836 catctttcaattcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatctga 9020913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 940 - 1008
Target Start/End: Original strand, 8984686 - 8984755
Alignment:
Q  940 tttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatat 1008  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||  |||||||||    
T  8984686 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatttgttcttattagtttaatat 8984755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 936 - 1008
Target Start/End: Original strand, 9030387 - 9030460
Alignment:
Q  936 catctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatat 1008  Q
    ||||||||||||||||  ||||| ||| ||||||||||||||||||||||||||||||||||||  ||||||||    
T  9030387 catctttcaactcatatttttcttggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatat 9030460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 949 - 1007
Target Start/End: Complemental strand, 19232504 - 19232445
Alignment:
Q  949 atacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaata 1007  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttcttatcagtttaata 19232445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 915 - 1008
Target Start/End: Original strand, 8988423 - 8988517
Alignment:
Q  915 atataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatat 1008  Q
    |||||||||||  | ||||  |||||||||||| ||||| |||| ||| ||||||| ||||||||||||||||| |||||||||| |||||||||    
T  8988423 atataaaagcataagcgagttcatctttcaacttataccattcttggccttttggcgaagatcaagtgtagtatttgttcttatcagtttaatat 8988517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 938 - 1012
Target Start/End: Original strand, 8992139 - 8992214
Alignment:
Q  938 tctttcaactcatacctttctcgg-cttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    ||||| ||||||| |||||||| | |||||||||||||||||||||||||| |||||||||  ||| |||||||||    
T  8992139 tcttttaactcatgcctttctcagtcttttggctaagatcaagtgtagtatatgttcttatgagttcaatatctga 8992214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 954 - 1012
Target Start/End: Complemental strand, 10763978 - 10763919
Alignment:
Q  954 tttctcgg-cttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||| |||||||||||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttcttatcagtttaatatctga 10763919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 915 - 998
Target Start/End: Original strand, 9016461 - 9016545
Alignment:
Q  915 atataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatc 998  Q
    |||||||||||  | ||||  ||||||| ||||||||||||  ||| | |||||||||||||||| |||||||||||||||||||    
T  9016461 atataaaagcataagcgagttcatcttttaactcataccttattcgaccttttggctaagatcaaatgtagtatctgttcttatc 9016545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 962 - 1012
Target Start/End: Complemental strand, 6471799 - 6471750
Alignment:
Q  962 cttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    |||||||||||||| ||||||||||| |||||||||  |||||||||||||    
T  6471799 cttttggctaagat-aagtgtagtatatgttcttattagtttaatatctga 6471750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 753; Significance: 0; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 753; E-Value: 0
Query Start/End: Original strand, 8 - 898
Target Start/End: Complemental strand, 14671035 - 14670148
Alignment:
Q  8 cttccaacgcaacagatgaatttggcattgtgggcattaagttgcgataaaaagggtacctttcatgaaatgatggacccatatttgattggcaaagtga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14671035 cttccaacgcaacagatgaatttggcattgtgggcattaagttgcgataaaaagggtacctttcatgaaatgatggacccatatttgattggcaaagtga 14670936  T
Q  108 atatggattctctaaacaaggctttagagttggcttggaagtgcttggaggagcgtcgggagaacagaccaccgatggggtatgtattatgtcaactaga 207  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14670935 atatggattctctaaacaaggttttagagttggcatggaagtgcttggaggagcgtcgggagaacagaccaccgatggggtatgtattatgtcaactaga 14670836  T
Q  208 agaggctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttctatacactcca--gtaggaagtggatttacggatgaaattgaa 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||    
T  14670835 agaggctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttctattcactccagtgtaggaagtggatttacggatgaaattgaa 14670736  T
Q  306 gatgttgtttgaaaccatagcctcctaatttaacaactcatttgttaaagttggtcattttagtggtatcataattatatttattgnnnnnnntttagag 405  Q
    |||||||||   |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||        ||||||    
T  14670735 gatgttgtt---aaccatagcctcctaattcaacaactcatttgttaaagttggtcattttagtggtatcataattgtatttattgaaaaaaaattagag 14670639  T
Q  406 tcaatatagtttcttaattcaacaaagcatagttttctaaaagtttttcgagtaaatatatttataacatgttttagtgaatttcaattcttgagatatg 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14670638 tcaatatagtttcttaattcaacaaagcatagttttctaaaagtttttcgagtaaatatatttataatatgttttagtgaatttcaattcttgagatatg 14670539  T
Q  506 tgattactgatagagatgggatattagtgaatttgtctaaagtcgaagcagaagtaggaaatccctaagacattaggtgggttatttagtttccttagtt 605  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14670538 tgattactgatagagatgggatattagtgaatttgtctaaagtcgaagtagaagtaggaaatccctaagacattaggtgggttatttagtttccttagtt 14670439  T
Q  606 tggcgggagattatcagagtgtttctccaaattgtgttgtatatgataggatgccattgacnnnnnnnttgtgttcaggagttgaagaggatgtttacca 705  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  14670438 tggcgggagattatcagattgtttctccaaattgtgttgtatatgataggatgccattgac-ggggggttgtgttcaggagttgaagaggatgtttacca 14670340  T
Q  706 tgttgccaacctaaggaccgactaatccgatggagcgatcctttgtctattgttcaggagttgaagaggatgtttcacatggtatgccataaataagttt 805  Q
    |||| ||| ||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14670339 tgtttccagcctaaggaccgactaatccgatggagcaattctttgtctatggttcaggagttgaagaggatgtttcacatggtatgctataaataagttt 14670240  T
Q  806 gcaacttcagtgttgtgtatttgggtttaatagtagttataactcatcacatcacctttgggaaccaagacaagactgatctctgtgtgtagt 898  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14670239 gcaacttcagtgttgtgtattt-ggtttaatagtagttataactcatcacatcacctttgggaaccaagacaagactgatctctgtgtgtagt 14670148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 8 - 625
Target Start/End: Original strand, 14704968 - 14705584
Alignment:
Q  8 cttccaacgcaacagatgaatttggcattgtgggcattaagttgcgataaaaagggtacctttcatgaaatgatggacccatatttgattggcaaagtga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14704968 cttccaacgcaacagatgaatttggcattgtgggcattaagttgcgataaaaagggtacctttcatgaaatgatggacccatatttgattggcaaagtga 14705067  T
Q  108 atatggattctctaaacaaggctttagagttggcttggaagtgcttggaggagcgtcgggagaacagaccaccgatggggtatgtattatgtcaactaga 207  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14705068 atatggattctctaaacaaggttttagagttggcatggaagtgcttggaggagcgtcgggagaacagaccaccgatggggtatgtattatgtcaactaga 14705167  T
Q  208 agaggctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttctatacactcca--gtaggaagtggatttacggatgaaattgaa 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||    
T  14705168 agaggctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttctattcactccagtgtaggaagtggatttacggatgaaattgaa 14705267  T
Q  306 gatgttgtttgaaaccatagcctcctaatttaacaactcatttgttaaagttggtcattttagtggtatcataattatatttattgnnnnnnntttagag 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       |||||||    
T  14705268 gatgttgtttgaaaccatagcctcctaatttaacaactcatttgttaaagttggtcattttagtggtatcataattgtatttattgaaaaaaatttagag 14705367  T
Q  406 tcaatatagtttcttaattcaacaaagcatagttttctaaaagtttttcgagtaaatatatttataacatgttttagtgaatttcaattcttgagatatg 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||| ||||    
T  14705368 tcaatatagtttcttaattcaacaaagcatagttttctaaaagttttttgagtaaatctatttataatatgttttagtgaatttcaattcttgaggtatg 14705467  T
Q  506 tgattactgatagagatgggatattagtgaatttgtctaaagtcgaagcagaagtaggaaatccctaagacattaggtgggttatttagtttccttagtt 605  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  || || |||||||||||    
T  14705468 tgattactgatagagatgggatattagtgaatttgtctaaagtggaagcagaagtaggaaatccctaagacattaggtggg--atgta-tttccttagtt 14705564  T
Q  606 tggcgggagattatcagagt 625  Q
    ||||||||||||||||||||    
T  14705565 tggcgggagattatcagagt 14705584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 8 - 624
Target Start/End: Original strand, 14685278 - 14685883
Alignment:
Q  8 cttccaacgcaacagatgaatttggcattgtgggcattaagttgcgataaaaagggtacctttcatgaaatgatggacccatatttgattggcaaagtga 107  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14685278 cttccaacgcaacagatgaatttggcaatgtgggcattaagttgcgataaaaagggtacctttcatgaaatgatggacccatttttgattggcaaagtga 14685377  T
Q  108 atatggattctctaaacaaggctttagagttggcttggaagtgcttggaggagcgtcgggagaacagaccaccgatggggtatgtattatgtcaactaga 207  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||| ||||||||||||||    
T  14685378 atatggattctctaaacaaggttttagagttggcttggaagtgcttggaggagcgtccggagaacagaccatcaatggggtatgtgttatgtcaactaga 14685477  T
Q  208 agaggctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttctatacactcca--gtaggaagtggatttacggatgaaattgaa 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||  ||| |||||||||||| |||||||||||||    
T  14685478 agaggctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttctattcgctccagtgtatgaagtggatttatggatgaaattgaa 14685577  T
Q  306 gatgttgtttgaaaccatagcctcctaatttaacaactcatttgttaaagttggtcattttagtggtatcataattatatttattg-nnnnnnntttaga 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||          ||||    
T  14685578 gatgttgtttgaaaccatagcctcctaatttaacaactcatttgttaaagttggttattttagtggtatcataattgtatttattgaaaaaaaaaataga 14685677  T
Q  405 gtcaatatagtttcttaattcaacaaagcatagttttctaaaagtttttcgagtaaatatatttataacatgttttagtgaatttcaattcttgagatat 504  Q
    |||||| |||||||||||||||||||| |||||||||||||||    ||| ||||||| ||||||||| ||||||||||||||||||||||||| || ||    
T  14685678 gtcaatgtagtttcttaattcaacaaaccatagttttctaaaaaaaattcaagtaaatctatttataatatgttttagtgaatttcaattcttgggacat 14685777  T
Q  505 gtgattactgatagagatgggatattagtgaatttgtctaaagtcgaagcagaagtaggaaatccctaagacattaggtgggttatttagtttccttagt 604  Q
    |||||||||||              | |||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  14685778 gtgattactga--------------tggtgaatttgtctaaagtcaaagcagaagtaggaaatccctaagacatttgttgggttatttagtttccttagt 14685863  T
Q  605 ttggcgggagattatcagag 624  Q
    ||||||||||||||||||||    
T  14685864 ttggcgggagattatcagag 14685883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 906 - 1028
Target Start/End: Complemental strand, 14669857 - 14669732
Alignment:
Q  906 acatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcgg-cttttggctaagatcaagtgtagtatctgttcttatcggttta 1004  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  14669857 acatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagttta 14669758  T
Q  1005 atatctga-atgtgga-caatggttc 1028  Q
    |||||||| ||||||| |||||||||    
T  14669757 atatctgatatgtggaccaatggttc 14669732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 911 - 1028
Target Start/End: Original strand, 14706052 - 14706172
Alignment:
Q  911 tctgatataaaagcagcaacgagcccatctttcaactcatacctttctcgg-cttttggctaagatcaagtgtagtatctgttcttatcggtttaatatc 1009  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14706052 tctgatataaaagcagcaccgagcccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatc 14706151  T
Q  1010 tga-atgtgga-caatggttc 1028  Q
    ||| ||||||| |||||||||    
T  14706152 tgatatgtggaccaatggttc 14706172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 903 - 1028
Target Start/End: Original strand, 14674437 - 14674565
Alignment:
Q  903 gagacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggt 1001  Q
    |||| ||||||||||||||||||||| | |||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  14674437 gagaaatgtctgatataaaagcagcacctagccaatcttccaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 14674536  T
Q  1002 ttaatatctga-atgtgga-caatggttc 1028  Q
    ||||||||||| ||||||| |||||||||    
T  14674537 ttaatatctgatatgtggaccaatggttc 14674565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 903 - 1028
Target Start/End: Original strand, 14679815 - 14679943
Alignment:
Q  903 gagacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggt 1001  Q
    |||| ||||||||||||||||||||| | |||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  14679815 gagaaatgtctgatataaaagcagcacctagccaatcttccaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 14679914  T
Q  1002 ttaatatctga-atgtgga-caatggttc 1028  Q
    ||||||||||| ||||||| |||||||||    
T  14679915 ttaatatctgatatgtggaccaatggttc 14679943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 903 - 1028
Target Start/End: Original strand, 14681555 - 14681683
Alignment:
Q  903 gagacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggt 1001  Q
    |||| ||||||||||||||||||||| | ||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  14681555 gagaaatgtctgatataaaagcagcacctagcccatttttcaacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagt 14681654  T
Q  1002 ttaatatctga-atgtgga-caatggttc 1028  Q
    ||||||||||| ||||||| |||||||||    
T  14681655 ttaatatctgatatgtggaccaatggttc 14681683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 908 - 1010
Target Start/End: Original strand, 14716252 - 14716355
Alignment:
Q  908 atgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaat 1006  Q
    ||||||||||||||||||||| ||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  14716252 atgtctgatataaaagcagcaccgagttcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaat 14716351  T
Q  1007 atct 1010  Q
    ||||    
T  14716352 atct 14716355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 908 - 1028
Target Start/End: Complemental strand, 14654486 - 14654363
Alignment:
Q  908 atgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaat 1006  Q
    |||||| |||||||||||||| |  | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  14654486 atgtctaatataaaagcagcagcttgtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaat 14654387  T
Q  1007 atctga-atgtgga-caatggttc 1028  Q
    |||||| ||||||| |||||||||    
T  14654386 atctgatatgtggaccaatggttc 14654363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 908 - 1028
Target Start/End: Complemental strand, 14664277 - 14664154
Alignment:
Q  908 atgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaat 1006  Q
    |||||| |||||||||||||| |  | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  14664277 atgtctaatataaaagcagcagcttgtccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaat 14664178  T
Q  1007 atctga-atgtgga-caatggttc 1028  Q
    |||||| ||||||| |||||||||    
T  14664177 atctgatatgtggaccaatggttc 14664154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 908 - 1028
Target Start/End: Original strand, 14708539 - 14708662
Alignment:
Q  908 atgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaat 1006  Q
    ||||| ||||||||||||  |  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  14708539 atgtcagatataaaagcactagtgagcccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaat 14708638  T
Q  1007 atctga-atgtgga-caatggttc 1028  Q
    |||||| ||||||| |||||||||    
T  14708639 atctgatatgtggaccaatggttc 14708662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 908 - 1028
Target Start/End: Original strand, 14676593 - 14676716
Alignment:
Q  908 atgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaat 1006  Q
    ||||||| ||||||||| ||| | || |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  14676593 atgtctgttataaaagcggcagctagtccatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaat 14676692  T
Q  1007 atctga-atgtgga-caatggttc 1028  Q
    |||||| ||||||| |||||||||    
T  14676693 atctgatatgtggaccaatggttc 14676716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 908 - 1028
Target Start/End: Original strand, 14683711 - 14683834
Alignment:
Q  908 atgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaat 1006  Q
    ||||||| ||||||||| ||| | || |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  14683711 atgtctgttataaaagcggcagctagtccatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaat 14683810  T
Q  1007 atctga-atgtgga-caatggttc 1028  Q
    |||||| ||||||| |||||||||    
T  14683811 atctgatatgtggaccaatggttc 14683834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 776 - 898
Target Start/End: Original strand, 14676148 - 14676263
Alignment:
Q  776 tgtttcacatggtatgccataaataagtttgcaacttcagtgttgtgtatttgggtttaatagtagttataactcatcacatcacctttgggaaccaaga 875  Q
    ||||||| ||||||||| ||||||||| ||||||| |||||||||||||||||| |||| ||||||||||||||||||||     |||| ||||||||||    
T  14676148 tgtttcatatggtatgc-ataaataaggttgcaacgtcagtgttgtgtatttggtttta-tagtagttataactcatcac-----cttttggaaccaaga 14676240  T
Q  876 caagactgatctctgtgtgtagt 898  Q
    |||||||||||||||||||||||    
T  14676241 caagactgatctctgtgtgtagt 14676263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 776 - 898
Target Start/End: Original strand, 14683266 - 14683381
Alignment:
Q  776 tgtttcacatggtatgccataaataagtttgcaacttcagtgttgtgtatttgggtttaatagtagttataactcatcacatcacctttgggaaccaaga 875  Q
    ||||||| ||||||||| ||||||||| ||||||| |||||||||||||||||| |||| ||||||||||||||||||||     |||| ||||||||||    
T  14683266 tgtttcatatggtatgc-ataaataaggttgcaacgtcagtgttgtgtatttggtttta-tagtagttataactcatcac-----cttttggaaccaaga 14683358  T
Q  876 caagactgatctctgtgtgtagt 898  Q
    |||||||||||||||||||||||    
T  14683359 caagactgatctctgtgtgtagt 14683381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 915 - 1012
Target Start/End: Complemental strand, 28366338 - 28366240
Alignment:
Q  915 atataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    ||||||||||||   ||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28366338 atataaaagcagatgcgaacccctctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 28366240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 935 - 1012
Target Start/End: Original strand, 33988058 - 33988136
Alignment:
Q  935 ccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33988058 ccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 33988136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 940 - 1012
Target Start/End: Complemental strand, 38175644 - 38175571
Alignment:
Q  940 tttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38175644 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 38175571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 908 - 1020
Target Start/End: Original strand, 14652486 - 14652600
Alignment:
Q  908 atgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaat 1006  Q
    ||||||||||||| ||||||| |  | || || || || |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  14652486 atgtctgatataagagcagcagctggtccttcattgaaatcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaat 14652585  T
Q  1007 atctga-atgtggac 1020  Q
    |||||| ||||||||    
T  14652586 atctgatatgtggac 14652600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 908 - 1020
Target Start/End: Original strand, 14662277 - 14662391
Alignment:
Q  908 atgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaat 1006  Q
    ||||||||||||| ||||||| |  | || || || || |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  14662277 atgtctgatataagagcagcagctggtccttcattgaaatcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaat 14662376  T
Q  1007 atctga-atgtggac 1020  Q
    |||||| ||||||||    
T  14662377 atctgatatgtggac 14662391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 906 - 1012
Target Start/End: Complemental strand, 14667258 - 14667152
Alignment:
Q  906 acatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggttta 1004  Q
    ||||||| |||||||||||||||  || | ||| ||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||    
T  14667258 acatgtcagatataaaagcagcag-gatctcatgttgtaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagttta 14667160  T
Q  1005 atatctga 1012  Q
    ||||||||    
T  14667159 atatctga 14667152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 953 - 1012
Target Start/End: Original strand, 37422175 - 37422235
Alignment:
Q  953 ctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    |||||||||| |||||||||||||||||||||| || |||||||||| |||||||||||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttcttatcagtttaatatctga 37422235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 950 - 1008
Target Start/End: Complemental strand, 11872585 - 11872526
Alignment:
Q  950 tacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatat 1008  Q
    ||||||||||||| ||||| ||||||||||||||| |||||||||||||| |||||||||    
T  11872585 tacctttctcggccttttgactaagatcaagtgtactatctgttcttatcagtttaatat 11872526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 943 - 1008
Target Start/End: Original strand, 28698549 - 28698615
Alignment:
Q  943 caactcatacctttctcgg-cttttggctaagatcaagtgtagtatctgttcttatcggtttaatat 1008  Q
    |||||||||| |||||||| ||||||||||||||||| |||||||| | || |||||  ||||||||    
T  28698549 caactcatacatttctcggtcttttggctaagatcaaatgtagtatatatttttatcaatttaatat 28698615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 160; Significance: 1e-84; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 1e-84
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 24058990 - 24059229
Alignment:
Q  8 cttccaacgcaacagatgaatttggcattgtgggcattaagttgcgataaaaagggtacctttcatgaaatgatggacccatatttgattggcaaagtga 107  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||| |||||||||| || |||||||||||||||||||| ||||||| |||||||||||    
T  24058990 cttccaacgcagcagatgaatttggcattttgggcattaagctgccataaaaagggcacttttcatgaaatgatggacccttatttgactggcaaagtga 24059089  T
Q  108 atatggattctctaaacaaggctttagagttggcttggaagtgcttggaggagcgtcgggagaacagaccaccgatggggtatgtattatgtcaactaga 207  Q
    ||||||| ||| ||||||||| ||||||| |||||||||||||||||||||||||||| | |||||||||| | ||||||||  ||||||||||||||||    
T  24059090 atatggagtctgtaaacaaggttttagagctggcttggaagtgcttggaggagcgtcgagtgaacagaccatcaatggggtacatattatgtcaactaga 24059189  T
Q  208 agaggctctccatcttgagttggcatcacatgtttcgaat 247  Q
    |||||||||||||||||||||||||||| |||||| ||||    
T  24059190 agaggctctccatcttgagttggcatcagatgttttgaat 24059229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 914 - 1012
Target Start/End: Complemental strand, 41841292 - 41841193
Alignment:
Q  914 gatataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    ||||||||||||| | | | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41841292 gatataaaagcagaagccaacccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 41841193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 914 - 1012
Target Start/End: Original strand, 44878950 - 44879049
Alignment:
Q  914 gatataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    |||||||||||||   |||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44878950 gatataaaagcagaggcgagcccaacattcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 44879049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 914 - 1012
Target Start/End: Complemental strand, 44880971 - 44880872
Alignment:
Q  914 gatataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    |||||||||||||   |||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44880971 gatataaaagcagaggcgagcccaacattcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 44880872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 947 - 1012
Target Start/End: Original strand, 40054312 - 40054378
Alignment:
Q  947 tcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40054312 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 40054378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 944 - 1022
Target Start/End: Complemental strand, 10944509 - 10944429
Alignment:
Q  944 aactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga-atgtggacaa 1022  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||    
T  10944509 aactcatacctttctcgaccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatcttatatgtggacaa 10944429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 949 - 1012
Target Start/End: Original strand, 37679757 - 37679821
Alignment:
Q  949 atacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37679757 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 37679821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 947 - 1012
Target Start/End: Original strand, 37682057 - 37682123
Alignment:
Q  947 tcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37682057 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 37682123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 963 - 1012
Target Start/End: Original strand, 44582870 - 44582919
Alignment:
Q  963 ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44582870 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 44582919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 914 - 1012
Target Start/End: Complemental strand, 42220985 - 42220887
Alignment:
Q  914 gatataaaagcagcaacgagcccatctttcaactcatacctttctcgg-cttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    |||||||||||||   |||||  | |||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||||  |||||||||||||    
T  42220985 gatataaaagcagaggcgagcatagctttcaactcatacatttttcggtcttttggctaagatcaagtgtagtatct-ttcttattagtttaatatctga 42220887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 939 - 1008
Target Start/End: Complemental strand, 42555198 - 42555128
Alignment:
Q  939 ctttcaactcatacctttctcgg-cttttggctaagatcaagtgtagtatctgttcttatcggtttaatat 1008  Q
    |||||||||||||||||||| |  |||||||||||||||||||| || ||||||| ||||| |||||||||    
T  42555198 ctttcaactcatacctttcttgatcttttggctaagatcaagtgcagaatctgtttttatcagtttaatat 42555128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 940 - 989
Target Start/End: Complemental strand, 42872564 - 42872514
Alignment:
Q  940 tttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatct 989  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  42872564 tttcaactcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 936 - 1012
Target Start/End: Original strand, 42092010 - 42092086
Alignment:
Q  936 catctttcaactcatacctttctcggcttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    ||||||| |||||||||||||||  || ||| ||||| || ||||||| ||| |||||||||| |||||||||||||    
T  42092010 catctttaaactcatacctttctttgccttttgctaaaattaagtgtaatatttgttcttatcagtttaatatctga 42092086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 2e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 913 - 1012
Target Start/End: Complemental strand, 10796031 - 10795931
Alignment:
Q  913 tgatataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctg 1011  Q
    |||||||||||||| | | ||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10796031 tgatataaaagcagaagccagctcttctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctg 10795932  T
Q  1012 a 1012  Q
    |    
T  10795931 a 10795931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 913 - 1012
Target Start/End: Complemental strand, 10791793 - 10791693
Alignment:
Q  913 tgatataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctg 1011  Q
    |||||||||||||| | | | | | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10791793 tgatataaaagcagaagccaactcttctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctg 10791694  T
Q  1012 a 1012  Q
    |    
T  10791693 a 10791693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 947 - 1020
Target Start/End: Original strand, 30521242 - 30521317
Alignment:
Q  947 tcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga-atgtggac 1020  Q
    |||||||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  30521242 tcatacctttctcgaccttttggctgagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggac 30521317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 962 - 1012
Target Start/End: Original strand, 8875705 - 8875755
Alignment:
Q  962 cttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    |||||||||||||||||||||| ||||||||||||||  ||||||||||||    
T  8875705 cttttggctaagatcaagtgtaatatctgttcttatcaatttaatatctga 8875755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 2e-30; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 913 - 1012
Target Start/End: Complemental strand, 50077340 - 50077240
Alignment:
Q  913 tgatataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctg 1011  Q
    |||||||||||||| | | ||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  50077340 tgatataaaagcagaagccagctcttctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctg 50077241  T
Q  1012 a 1012  Q
    |    
T  50077240 a 50077240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 913 - 1012
Target Start/End: Complemental strand, 49106670 - 49106570
Alignment:
Q  913 tgatataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctg 1011  Q
    |||||||||||||| | | ||||   |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  49106670 tgatataaaagcagaagccagccaccctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctg 49106571  T
Q  1012 a 1012  Q
    |    
T  49106570 a 49106570  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 913 - 1012
Target Start/End: Complemental strand, 49108774 - 49108674
Alignment:
Q  913 tgatataaaagcagcaacgagcccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctg 1011  Q
    |||||||||| ||| | | |||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  49108774 tgatataaaatcagaagccagcctatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctg 49108675  T
Q  1012 a 1012  Q
    |    
T  49108674 a 49108674  T

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Target: chr4; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 934 - 1012
Target Start/End: Complemental strand, 11652512 - 11652433
Alignment:
Q  934 cccatctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11652512 cccatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 11652433  T

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Target: chr4; HSP #5
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 938 - 1012
Target Start/End: Complemental strand, 3461258 - 3461183
Alignment:
Q  938 tctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3461258 tctttcaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 3461183  T

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Target: chr4; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 948 - 1020
Target Start/End: Complemental strand, 26984773 - 26984699
Alignment:
Q  948 catacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga-atgtggac 1020  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggac 26984699  T

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Target: chr4; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 948 - 1020
Target Start/End: Complemental strand, 26998846 - 26998772
Alignment:
Q  948 catacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga-atgtggac 1020  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggac 26998772  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 948 - 1010
Target Start/End: Original strand, 48205832 - 48205895
Alignment:
Q  948 catacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatct 1010  Q
    ||||||||||||||| |||| |||||||| |||||||||||||||||||||   ||||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgttcttattaatttaatatct 48205895  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 974 - 1012
Target Start/End: Original strand, 21503706 - 21503744
Alignment:
Q  974 atcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  21503706 atcaagtgtagtatctgttcttatcagtttaatatctga 21503744  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 913 - 997
Target Start/End: Complemental strand, 49533765 - 49533682
Alignment:
Q  913 tgatataaaagcagcaacgagcccatctttcaactcatacctttctcggcttttggctaagatcaagtgtagtatctgttcttat 997  Q
    |||||||||| ||| | | ||||| | || |||| |||||||||||||||  ||||||||||||||||| | |||||||||||||    
T  49533765 tgatataaaaccagaagccagcccttattccaacccatacctttctcggcccttggctaagatcaagtgca-tatctgttcttat 49533682  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 949 - 1020
Target Start/End: Complemental strand, 41013651 - 41013578
Alignment:
Q  949 atacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga-atgtggac 1020  Q
    |||| ||||||||| |||||| |||||| |||| || ||| |||||||||| ||||||||||||| ||||||||    
T  41013651 atacttttctcggccttttggttaagattaagtataatatatgttcttatccgtttaatatctgatatgtggac 41013578  T

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Target: chr5 (Bit Score: 62; Significance: 3e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 936 - 1012
Target Start/End: Complemental strand, 1716570 - 1716493
Alignment:
Q  936 catctttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1716570 catcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 1716493  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 940 - 1012
Target Start/End: Original strand, 7524961 - 7525034
Alignment:
Q  940 tttcaactcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7524961 tttcaagtcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 7525034  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 947 - 1012
Target Start/End: Original strand, 3643640 - 3643706
Alignment:
Q  947 tcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3643640 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 3643706  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 951 - 1012
Target Start/End: Original strand, 4103249 - 4103311
Alignment:
Q  951 acctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    ||||||||| || |||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  4103249 acctttctcagcattttggttaagatcaagtgtagtatctgttcttatcagtttaatatctga 4103311  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 947 - 1012
Target Start/End: Original strand, 27134511 - 27134577
Alignment:
Q  947 tcatacctttctcggc-ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 1012  Q
    |||||||||| ||||| ||||  |||||||||| | |||||||||||||||| ||||||||||||||    
T  27134511 tcatacctttttcggccttttcactaagatcaaatctagtatctgttcttattggtttaatatctga 27134577  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 949 - 994
Target Start/End: Complemental strand, 15758608 - 15758562
Alignment:
Q  949 atacctttctcggc-ttttggctaagatcaagtgtagtatctgttct 994  Q
    ||||||||||| || ||||||||||||||||||||| ||||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttct 15758562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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