View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5017-Insertion-5 (Length: 1000)
Name: NF5017-Insertion-5
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5017-Insertion-5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 817; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 817; E-Value: 0
Query Start/End: Original strand, 7 - 970
Target Start/End: Original strand, 6424117 - 6425077
Alignment:
| Q |
7 |
aggtttgtgttttattttgttatttttagtagacacatgacaccactgtagcaccgacaattctgatcgaaggcatgtttggtgtctgacaccgacacat |
106 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6424117 |
aggtttgtgttttattttgttattttttgtagacacatgacaccgctgtagcaccgacaattctgatcgaaggcatgtttggtgtctgacaccgacacat |
6424216 |
T |
|
| Q |
107 |
gtgattgcattaaattaattcatctttttaagttattattggtatcgatgtggcagtgttgtgtctagtgtctgtgtcggtgcatcatagcatgacacgc |
206 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6424217 |
gtgattgcattgaattaattcatctttttaagttattattggtatcgatgtggcagtgttgtgtctagtgtctgtgtcggtgcatcatagcatgacatgc |
6424316 |
T |
|
| Q |
207 |
cgttttgtggtttaaaaatgttatctttactattgtagaaaatggtggcaagaatgnnnnnnncttgtggcctagttttagtgagtacagtttggaagaa |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6424317 |
cgttttgtggtttaaaaatgttatctttactattgtagaaaatggtggcaaaaatgaaaaaaacttgtggcctagttttagtgagtacagtttggaagaa |
6424416 |
T |
|
| Q |
307 |
ttgaaggctgctacaaatggattctcctcggaaaacatagtctctgagcatggtgagaaagctccaaatgttgtttacaaagggaagcttgagaatggac |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6424417 |
ttgaaggctgctacaaatggattctcctcggaaaacatagtctctgagcatggtgagaaagctccaaatgttgtttacaaagggaaacttgagaatggac |
6424516 |
T |
|
| Q |
407 |
agttgattgctgtcaaacgtttcaacaagttcgcttggcccgattctcgacaattcattgtttgtttacttgccactttcactttattattgttctatat |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6424517 |
agttgattgctgtcaaacgtttcaacaagttcgcttggcccgattctcgacaattcattgtttgtttacttgccactttcacttcattattgttctatat |
6424616 |
T |
|
| Q |
507 |
tgtagttgtgatcgcagtcctagttctaaattgtggtatgcaactccaattttagttgaaatataaaggttttatagatctttgaaatggcaccgcaact |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6424617 |
tgtagttgtgatcgcagtcctagttctaaattgtggtatgcaactccaattttagttgaaatataaaggttttataggtctttgaaatggcaccgcaact |
6424716 |
T |
|
| Q |
607 |
tcaattgtggctgcattgactacatttgtctgcaatttactgcagtgtcaaggttcacagcataaccacaacttcgtcagcgactggcaatttagaacta |
706 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6424717 |
tcaattgtggctgcatcgactacatttgtctgcaatttactgcagtgtcaaggttcacagcataaccacaacttcgtcagcgact-gcaatttagaacta |
6424815 |
T |
|
| Q |
707 |
atattgcagtaaaaagttatgtcgcagtctttgatattgcgaaaaatagcatgcaaatgtagactatcgatgtgatcaccattgcggttgtggacgtagt |
806 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6424816 |
atattgcagtaaaaagttatgtcgcagtctttgatattgtgaaaaatagcatgcaaatgtagactatcgatgtgatcaccattgcggttgt-gacgtagt |
6424914 |
T |
|
| Q |
807 |
tgcagaaacctccaaaatgtttatgctgcagctgcaattgtagttgcagatcgtaatttaaaactatggtttaaaaagttgaattttagtactaagaatg |
906 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
6424915 |
tgcagaaacctccaaaatctttatgctgcagctgcaattgtagttgcagatcgtaatttaaaactat-gtttaaaaaattgaattttagtactaagaatg |
6425013 |
T |
|
| Q |
907 |
ac-aattgtggttgtga-tttgtaggaaggattctaaccagttggggaaccttaaaagtgatcgtt |
970 |
Q |
| |
|
|| || ||| ||||||| |||||||||| || ||||| || |||||||||||| ||||||||||| |
|
|
| T |
6425014 |
acaaaatgt-gttgtgattttgtaggaa-gaatctaaacaagtggggaaccttagaagtgatcgtt |
6425077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 357 - 402
Target Start/End: Complemental strand, 40710149 - 40710104
Alignment:
| Q |
357 |
tggtgagaaagctccaaatgttgtttacaaagggaagcttgagaat |
402 |
Q |
| |
|
||||||||||||||| || || |||||||||||||||||||||||| |
|
|
| T |
40710149 |
tggtgagaaagctcctaacgtggtttacaaagggaagcttgagaat |
40710104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 47665820 - 47665900
Alignment:
| Q |
55 |
tagcaccgacaattctgatcgaaggcatgtttggtgtctgacaccgacacatgtgattgcattaaattaattcatcttttt |
135 |
Q |
| |
|
|||||| |||| ||||| | |||||||||| |||||| |||||||||||||||||| |||| |||||||| || ||||| |
|
|
| T |
47665820 |
tagcactgacacttctggtggaaggcatgtccggtgtccaacaccgacacatgtgattacatttaattaattaattttttt |
47665900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 33950203 - 33950165
Alignment:
| Q |
85 |
ttggtgtctgacaccgacacatgtgattgcattaaatta |
123 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
33950203 |
ttggtgtctgacaccgacacatatgattacattaaatta |
33950165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 349 - 395
Target Start/End: Complemental strand, 11569969 - 11569923
Alignment:
| Q |
349 |
tctgagcatggtgagaaagctccaaatgttgtttacaaagggaagct |
395 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
11569969 |
tctgagcatggagagaaggctccaaatgttgtttataaagggaagct |
11569923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 337 - 398
Target Start/End: Original strand, 40909437 - 40909498
Alignment:
| Q |
337 |
gaaaacatagtctctgagcatggtgagaaagctccaaatgttgtttacaaagggaagcttga |
398 |
Q |
| |
|
||||| ||||| |||||||||||||| || |||||||||||||| || |||||||| ||||| |
|
|
| T |
40909437 |
gaaaatatagtttctgagcatggtgaaaaggctccaaatgttgtctataaagggaaacttga |
40909498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 20154076 - 20154122
Alignment:
| Q |
94 |
gacaccgacacatgtgattgcattaaattaattcatctttttaagtt |
140 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||| |||| ||||| |
|
|
| T |
20154076 |
gacactgacacatgtgattgcatttaattaattcattttttcaagtt |
20154122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 20203394 - 20203348
Alignment:
| Q |
94 |
gacaccgacacatgtgattgcattaaattaattcatctttttaagtt |
140 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||| |||| ||||| |
|
|
| T |
20203394 |
gacactgacacatgtgattgcatttaattaattcattttttcaagtt |
20203348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 22386096 - 22386026
Alignment:
| Q |
53 |
tgtagcaccgacaattctgatcgaaggcatgtttggtgtctgacaccgacacatgtgattgcattaaatta |
123 |
Q |
| |
|
||||| ||||||| ||||||| ||||| |||| ||||||||||||||||||| | |||| |||||||||| |
|
|
| T |
22386096 |
tgtagtaccgacatttctgattgaaggtatgtctggtgtctgacaccgacacgtatgataacattaaatta |
22386026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 44287906 - 44287860
Alignment:
| Q |
94 |
gacaccgacacatgtgattgcattaaattaattcatctttttaagtt |
140 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||| |||| ||||| |
|
|
| T |
44287906 |
gacactgacacatgtgattgcatttaattaattcattttttcaagtt |
44287860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 27012208 - 27012147
Alignment:
| Q |
68 |
tctgatcgaaggcatgtttggtgtctgacaccgacacatgtgattgcattaaattaattcat |
129 |
Q |
| |
|
||||||||||||||| | ||||||| |||| ||||||||||| | |||| ||||||||||| |
|
|
| T |
27012208 |
tctgatcgaaggcatatctggtgtccgacatagacacatgtgaatacatttaattaattcat |
27012147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 52067129 - 52067067
Alignment:
| Q |
119 |
aattaattcatctttttaagttattattggtatcgatgtggcagtgttgtgtctagtgtctgt |
181 |
Q |
| |
|
||||||||||| || |||| |||||||||||||||| ||| |||||||||||| |||||||| |
|
|
| T |
52067129 |
aattaattcattttcttaaattattattggtatcgacgtgtcagtgttgtgtccggtgtctgt |
52067067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 38612888 - 38612963
Alignment:
| Q |
53 |
tgtagcaccgacaattctgatcgaaggcatgtttggtgtctgacaccgacacatgtgattgcattaaattaattcat |
129 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||||||||||| |||| ||||||||| || | |||| | ||||||||| |
|
|
| T |
38612888 |
tgtagcatcgacatttctgatctaaggcatgtttggtgtccgaca-cgacacatgcgagtacattcagttaattcat |
38612963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 13725390 - 13725331
Alignment:
| Q |
70 |
tgatcgaaggcatgtttggtgtctgacaccgacacatgtgattgcattaaattaattcat |
129 |
Q |
| |
|
|||| |||||||||| |||||||| ||| ||||||||||||| |||| ||||||||||| |
|
|
| T |
13725390 |
tgattgaaggcatgtccggtgtctggcacagacacatgtgatttcattcaattaattcat |
13725331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 42043193 - 42043274
Alignment:
| Q |
89 |
tgtctgacaccgacacatgtgattgcattaaattaattcatctttttaagttattattggtatcgatgtggcagtgttgtgt |
170 |
Q |
| |
|
|||||||||||||| ||||| ||| |||| ||||||||||| || |||| ||||||| ||| | |||||| | ||||||||| |
|
|
| T |
42043193 |
tgtctgacaccgacgcatgttattacattcaattaattcattttattaaattattatcggtgttgatgtgtccgtgttgtgt |
42043274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 16199223 - 16199264
Alignment:
| Q |
53 |
tgtagcaccgacaattctgatcgaaggcatgtttggtgtctg |
94 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
16199223 |
tgtagcaccgacatttctgatcaaaggcttgtttggtgtctg |
16199264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University