View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5017-Insertion-7 (Length: 764)
Name: NF5017-Insertion-7
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5017-Insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 356
Target Start/End: Complemental strand, 8922407 - 8922058
Alignment:
| Q |
8 |
atacgggccaacgttgcacgattcgataggtttggtggtgtgggtacggctatgacgaagatggaggaagcggagagggagtaattggatgagggagaaa |
107 |
Q |
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| T |
8922407 |
atacgggccaacgttgcacgattcgataggtttggtggtgtgggtacggctatgacgaagatggaggaagcggagagggagtaattggatgagggagaaa |
8922308 |
T |
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| Q |
108 |
atattatgaaggagaaaacccctttcagtggtgtgatcatttgaaagtcgtgaaacaatgttattttttctgataggacatcgtttgtcgtgcaactagt |
207 |
Q |
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| T |
8922307 |
atattatgaaggagaaaacccctttcagtggtgtgatcatttgaaagtcgtgaaacaatgttattttttctgataagacatcgtttgttgtgcaactggt |
8922208 |
T |
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| Q |
208 |
aaaccaagtaagattcaactcttgaaaagggnnnnnnnaggtcatccgaatattcatgtaacgtaatgaaa-cattcttatgtttgtgatgataggtttt |
306 |
Q |
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| T |
8922207 |
aaaccaagtaagattcaactcttgaaaagggtttttttaggtcatcggaatattcatgtaacgtaatgaaaccattcttatgtttgtgatgataggtttt |
8922108 |
T |
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| Q |
307 |
tattgatttggcagttttgtctcattatatgaatgtgtggattggataaa |
356 |
Q |
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| T |
8922107 |
tattgatttggcagttttgtctcattatatgaatgtgtgggttggataaa |
8922058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 12 - 337
Target Start/End: Complemental strand, 8957489 - 8957152
Alignment:
| Q |
12 |
gggccaacgttgcacgattcgataggtttggtggtgtgggtacggctatgacgaagatggaggaagcggagagggagtaattggatgagggagaaaatat |
111 |
Q |
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| T |
8957489 |
gggccagcgttgcacgttttgataggtttggtggtgtgggtgcggctatgacggagatggaggaagcggtgagggagtaattg-atgaggaagaaaatat |
8957391 |
T |
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| Q |
112 |
tatgaaggagaaaacccctttcagtggtgtgatcatttgaaagtcgtgaaacaatgttattttttctgataggacatcgtttgtcgtgcaactagtaaac |
211 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||| | |||||| | |||||| |
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| T |
8957390 |
tatgtgggagaaaacccctttcaatggtgtgatcatttgaaagtcgtgaaacaatgttattttgtctgataagacaacgtttattgtgcaattggtaaac |
8957291 |
T |
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| Q |
212 |
caagtaagattcaactcttgaaaagggnnnnnnnaggtcatccgaatattcatgtaac------------gtaatgaaa-cattcttatgtttgtgatga |
298 |
Q |
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| T |
8957290 |
caggtaagattcaactcttgaaaagggtttttttaggtcgtcgacatattcatgttacttataagagtgggtagtgaaaccattcttatgtttgtgatta |
8957191 |
T |
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| Q |
299 |
taggtttttattgatttggcagttttgtctcattatatg |
337 |
Q |
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| T |
8957190 |
taggttttttatgatttggcagttttgtctcattatatg |
8957152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 408 - 554
Target Start/End: Complemental strand, 8922006 - 8921860
Alignment:
| Q |
408 |
gtgttggttgtctatagtagttggttgcgtttcttttggattatgtcttctttcgtattgagtttaattatgacttgtcacatatgcatatacgtggcat |
507 |
Q |
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| T |
8922006 |
gtgttggttgtctatagtagttggttgcgtttcttttggattatgtcttctttcgtattgagtttaattatgagttgtcacatttgcatatatgtggcat |
8921907 |
T |
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| Q |
508 |
tagctaactgtgccaagttgtccaactgcatccacgtggcaattcac |
554 |
Q |
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| T |
8921906 |
tagctgactgtgccaagttgtccaactgcatccacgtggcaattcac |
8921860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 666 - 764
Target Start/End: Complemental strand, 8921748 - 8921650
Alignment:
| Q |
666 |
ctattgcttactcttttgtgtcaatttgttaattgacttcattaaaattctcgtaggtattacgtacggaattgcccaaggtaattttttatattcaca |
764 |
Q |
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| T |
8921748 |
ctattgcttactcttttgtgtcaatttgttaattgacttcattaaaattctcgcaggtattacgtacggaattgcccaaggtaattttttatattcaca |
8921650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 689 - 764
Target Start/End: Complemental strand, 8933157 - 8933081
Alignment:
| Q |
689 |
atttgttaattgacttcattaaaa-ttctcgtaggtattacgtacggaattgcccaaggtaattttttatattcaca |
764 |
Q |
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| T |
8933157 |
atttgttaattgacttcattaaaatttctcgcaggtattatgtacggaattgccagaggtaaattcttatgttcaca |
8933081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 689 - 764
Target Start/End: Complemental strand, 8957096 - 8957020
Alignment:
| Q |
689 |
atttgttaattgacttcattaaaa-ttctcgtaggtattacgtacggaattgcccaaggtaattttttatattcaca |
764 |
Q |
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| T |
8957096 |
atttgttaattgacttcattaaaatttctcgcaggtattttgtacggaattgccagaggtaatttttaacattcaca |
8957020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 498 - 531
Target Start/End: Original strand, 33135043 - 33135076
Alignment:
| Q |
498 |
tacgtggcattagctaactgtgccaagttgtcca |
531 |
Q |
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| T |
33135043 |
tacgtggcattagctgactgtgccaagttgtcca |
33135076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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