View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5017-Insertion-8 (Length: 671)
Name: NF5017-Insertion-8
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5017-Insertion-8 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 7 - 671
Target Start/End: Original strand, 5033124 - 5033794
Alignment:
| Q |
7 |
acctgaatgtttcgtgaatttgcgcctcgttgactggaggagaactgagcaatattacgtgagtcttcttcgacaggctctggaaaccattaggattagt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5033124 |
acctgaatgtttcgtgaatttgcgcctcgttgactggaggagaactgagcaatattacgtgagtcttcttcgacaggctctggaaaccattaggattagt |
5033223 |
T |
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| Q |
107 |
caaacattgttggtataaacatgacaaatnnnnnnnnn-----gtgatagtaaggaattcaacctgaagattgataataatcttcttcatatttactctg |
201 |
Q |
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||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||| | ||| |
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| T |
5033224 |
caaacattgttagtataaacatgacaaataaaaaaaaaaaactgtgatagtgtagaattcaaccttaagatggataataatcttcttcatattttccctg |
5033323 |
T |
|
| Q |
202 |
tattcttcaaggggtacatgaggaccaaggccag--gtctgtggatgaatagaatcattgccaccaaattacacaataaccaacgatggttgctcaacag |
299 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5033324 |
tattcttcaaggggtacatgaggaccaaggccagatgtctgtggatgaatagaatcattgccaccaaattacacaataaccaacgatggttgctcaacag |
5033423 |
T |
|
| Q |
300 |
cattctgttttgaatatcacaaagcaaaatttttgattcctctaagtatgaggaatataatcaaagtaatcacatcgaccaaaatgaatctaaatattat |
399 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5033424 |
cattctgttttgaatatcacaaagcaaaattttttattcctctaagtatgaggaata--atcaaagtaatcacatcgaccaaaatgaatctaaatattat |
5033521 |
T |
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| Q |
400 |
ggtaaaagtagggagggatttggaacctctacgcctcctgcatgggacggtgatttgtaaaattattgtatttagacaga--aaaatttatatctttata |
497 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| ||| |
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| T |
5033522 |
ggtaaaagtagggagggatttggaacctctacgcctcgtgcatgggacggtgatttgtaaaattgttggatttagacagagaaaaatttatatcttcata |
5033621 |
T |
|
| Q |
498 |
tccaatggttctacaagccgatgcaccacacagcgtctatatgatctccacacacatatacataagtgatacataagacttggatactctccagctccat |
597 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5033622 |
tccaatggttctacaagccgatgcaccacacagcgtctatatgatctccacacacatatacataagtgatacataagacttggatactctccaactccat |
5033721 |
T |
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| Q |
598 |
cccgtccagtatcacttaacagttggattaatttaatgaccgtgtcctgatctcttaaccattaacggctaaga |
671 |
Q |
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| T |
5033722 |
cccgtccagtatcacttaacagttggattaatttaacga-cgtgtcctgatctcttaaccgttaacggctaaga |
5033794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 329
Target Start/End: Original strand, 5038925 - 5039253
Alignment:
| Q |
7 |
acctgaatgtttcgtgaatttgcgcctcgttgactggaggagaactgagcaatattacgtgagtcttcttcgacaggctctggaaaccattaggattagt |
106 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
5038925 |
acctgaatgtttcatgaatttgcgcctcgttgactggaggagaactgagcaatattatgcgagtcttcttcgacaggctctggaaaccattaggattagt |
5039024 |
T |
|
| Q |
107 |
caaacattgttggtataaacatgacaaatnnnnnnnnn----gtgatagtaaggaattcaacctgaagattgataataatcttcttcatatttactctgt |
202 |
Q |
| |
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||||||||||| |||||||| |||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||| |||||| |
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| T |
5039025 |
caaacattgttagtataaacgtgacaaataaaaaaaaaaactgtgatagtgtagaattcaaccttaagatggataataatcttcttcatattttctctgt |
5039124 |
T |
|
| Q |
203 |
attcttcaaggggtacatgaggaccaaggccaggtc--tgtggatgaatagaatcattgccaccaaattacacaataaccaacgatggttgctcaacagc |
300 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
5039125 |
attcttcaaggggtacatgaggaccaaggccagatggatgtggatgaatagaatcattgccaccaaagtacacaataaccaatgatggttgctcaacagc |
5039224 |
T |
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| Q |
301 |
attctgttttgaatatcacaaagcaaaat |
329 |
Q |
| |
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||||||||||||| ||||||||||||||| |
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| T |
5039225 |
attctgttttgaagatcacaaagcaaaat |
5039253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 359 - 660
Target Start/End: Original strand, 5039261 - 5039569
Alignment:
| Q |
359 |
atcaaagtaatcacatcgaccaaaatgaatctaaatattatggtaaaagtagggagggatttggaacctctacgcctcctgcatgggacggtgatttgta |
458 |
Q |
| |
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|||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||| | ||||| || || |||||||| ||| |||||| |
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| T |
5039261 |
atcaaagtaatcacatcgtacaaaatgaatctgaatattatggtaaaattagggagggatttgaatcctcttcggcttctgcatggtgcggcagtttgta |
5039360 |
T |
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| Q |
459 |
aaattattgtatttagacagaaaaatttatatctttatatccaatggttctacaagccgatgcaccacacagcgtctat--atgat--ctccacacacat |
554 |
Q |
| |
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|| | ||| |||||||||||||||||| | |||||| |||||| ||| |||||||||| ||||||||||| || |||| ||||| || ||||||||| |
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| T |
5039361 |
aagctgttggatttagacagaaaaatttctctctttaaatccaacggtactacaagccggtgcaccacacaacgactatagatgatccctacacacacat |
5039460 |
T |
|
| Q |
555 |
atacataagtgatacataagacttggatactctccag----ctccatcccgtccagtatcacttaacagttggattaatttaatgaccgtgtcctgatct |
650 |
Q |
| |
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||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||| || |||||| |
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| T |
5039461 |
ataaataagagatacataagacttggaaactctccagctccctccatcccgtccagtatcacttaacagttggatt-atttaacgacctagttttgatct |
5039559 |
T |
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| Q |
651 |
cttaaccatt |
660 |
Q |
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|||||||||| |
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| T |
5039560 |
cttaaccatt |
5039569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 1555219 - 1555143
Alignment:
| Q |
155 |
ggaattcaacctgaagattgataataatcttcttcatatttactctgtattcttcaaggggtacatgaggaccaagg |
231 |
Q |
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|||||| ||||| ||||| ||||||||||||| |||||||| | | |||| ||||||||||||||||||||||||| |
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| T |
1555219 |
ggaatttaaccttaagatggataataatcttcctcatattttcaatttatttttcaaggggtacatgaggaccaagg |
1555143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 25095674 - 25095762
Alignment:
| Q |
23 |
aatttgcgcctcgttgactggaggagaactgagcaatattacgtgagtcttcttcgacaggctctggaaaccattaggattagtcaaac |
111 |
Q |
| |
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|||||| ||||| ||||| ||||||| |||||| ||||| | | |||||||||| |||||||||||| || ||||||||| ||||||| |
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| T |
25095674 |
aatttgtgcctcattgacaggaggagcactgagaaatatcaggcgagtcttctttgacaggctctggcaatcattaggatgtgtcaaac |
25095762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 25084986 - 25085052
Alignment:
| Q |
241 |
tggatgaatagaatcattgccaccaaattacacaataaccaacgatggttgctcaacagcattctgt |
307 |
Q |
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||||||| || ||||||| |||||||| |||||||| ||||| ||||||||||||| ||||||||| |
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| T |
25084986 |
tggatgagtacaatcattaccaccaaagtacacaatcaccaatgatggttgctcaatggcattctgt |
25085052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 295
Target Start/End: Original strand, 25095859 - 25095976
Alignment:
| Q |
180 |
aatcttcttcatatttactctgtattcttcaaggggtacatgaggaccaaggccaggtc--tgtggatgaatagaatcattgccaccaaattacacaata |
277 |
Q |
| |
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||||||||||||||| | ||||||||| ||| |||||||| ||||||||||| | |||| | ||| |||||||||||||||||| |||||||| |
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| T |
25095859 |
aatcttcttcatattatcaatgtattcttgaagaggtacatgttgaccaaggccacttggatgtgaaagaacagaatcattgccaccaaagtacacaatt |
25095958 |
T |
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| Q |
278 |
accaacgatggttgctca |
295 |
Q |
| |
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| |||||| ||||||||| |
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| T |
25095959 |
atcaacgacggttgctca |
25095976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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