View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5017_high_1 (Length: 715)
Name: NF5017_high_1
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5017_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 513; Significance: 0; HSPs: 17)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 657
Target Start/End: Original strand, 8368570 - 8369219
Alignment:
| Q |
1 |
tatcctttatatattcctctgtggggtttcctattgctattgtggtttcgatgtgagacttaagctgtttgaacaatcttgttgcatttctttgctcctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8368570 |
tatcctttatatattcctctgtggggttaccaattgctattgtagtttcaatctgagacttaagctgtttgaacaatcttgttgcatttctttgctcctc |
8368669 |
T |
|
| Q |
101 |
agcaagttgtgaaggttggattttgttcatgataattaacataccggtagaagctgagaataaaagtgccgaagataatttgagggctaaaagaggagcg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8368670 |
agcaagttgtgaaggttggattttgttcatgataattaacataccagtagaagctgagaataaaagtgcagaagataatttgagggctaaaagaggagca |
8368769 |
T |
|
| Q |
201 |
ccggagccgcttatggctgatatacctgccatggcggtggcggtgagagggatcatgttgatggggtttaatagaaggggattcaaattatcgcgttgtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| ||||||||||||||| |
|
|
| T |
8368770 |
ccggagccgcttatggctgatatacctgccatggcggtggcggtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgtt |
8368869 |
T |
|
| Q |
301 |
cgccaatgttttgatgcatctctattctgtcggatacagattcaagaattgcatagagttgagtaatggtttttgtttttgtgtttggtgatttagaaga |
400 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8368870 |
cgccaatgttttgatgcatttctattctgtcggatacagattcaagaattgcatagagttgagtaatggtttttgtttttgtttttggtgatttagaaga |
8368969 |
T |
|
| Q |
401 |
aggagaattgtacttgggtgaataatgataatcattttcttgaatcattattgggattgtatgtgcaagttggccgtttattaactcctcaaatagtttt |
500 |
Q |
| |
|
||| |||| ||||||||||| |||||||||||||||||||||| |||||||||||||| |||| ||||||||||| |||||||||||||||| ||| |
|
|
| T |
8368970 |
aggggaatagtacttgggtg---aatgataatcattttcttgaattattattgggattgtgtgtgtaagttggccgt---ttaactcctcaaatagcttt |
8369063 |
T |
|
| Q |
501 |
ctacttggtcttgtttttggaactatggaaagaaccttagggagttttgggacattgaaagatgatttgattctttctgaagaagaa---gatgatgatg |
597 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8369064 |
ctgcttggtcttgtttttggaactatggaaagaactttagggagttttgggacattgaaagatgatttgattctttctgaagaagaagatgatgatgatg |
8369163 |
T |
|
| Q |
598 |
aaattaaagaagaaaatacttgtaaggaagccatattatatatatgttagatacttgatc |
657 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8369164 |
aaattaaagaagaaaatacttgtaaggaagccatat----tatatgttagatacttgatc |
8369219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Complemental strand, 8400840 - 8400276
Alignment:
| Q |
1 |
tatcctttatatattcctctgtggggtttcctattgctattgtggtttcgatgtgagacttaagctgtttgaacaatcttgttgcatttctttgctcctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8400840 |
tatcctttatatattcctctgtggggtttcctattgctattgttgtttcaatctgtgacttaagctgtttgaacaatcttgttgcatttctttgctcctc |
8400741 |
T |
|
| Q |
101 |
agcaagttgtgaaggttggattttgttcatgataattaacataccggtagaagctgagaataaaagtgccgaagataatttgagggctaaaagaggagcg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8400740 |
agcaagttgtgaaggttggattttgttcatgataattaacataccagtagaagctgagaataaaagtgctgaagataatttgagggctaaaagaggagca |
8400641 |
T |
|
| Q |
201 |
ccggagccgcttatggctgatatacctgccatggcggtggcggtgagagggatcatgttgatggggtttaatagaaggggattcaaattatcgcgttgtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| ||||||||||||||| |
|
|
| T |
8400640 |
ccggagccgcttatggctgatatacctgccatggcggtggcggtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgtt |
8400541 |
T |
|
| Q |
301 |
cgccaatgttttgatgcatctctattctgtcggatacagattcaagaattgcatagagttgagtaatggtttttgtttttgtgtttggtgatttagaaga |
400 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8400540 |
cgccaatgttttgatgcatttctattctgtcggatacagattcaagaattgcatagagttgagtaatggtttttgtttttgtttttggtgatttagaaga |
8400441 |
T |
|
| Q |
401 |
aggagaattgtacttgggtgaataatgataatcattttcttgaatcattattgggattgtatgtgcaagttggccgtttattaactcctcaaatagtttt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| ||||||| ||||||| |
|
|
| T |
8400440 |
aggagaattgtacttgggtgaataatgataatcattttcttgaatcattattgggattgtgtgtttgagttggccgt---ttaattcctcaattagtttt |
8400344 |
T |
|
| Q |
501 |
ctacttggtcttgtttttggaactatggaaagaaccttagggagttttgggacattgaaagatgattt |
568 |
Q |
| |
|
|||||||||||| | |||||| ||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
8400343 |
ctacttggtcttatatttggagctatggaaagaactttaggaagttttgggacattgaaagatgattt |
8400276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Complemental strand, 8422417 - 8421853
Alignment:
| Q |
1 |
tatcctttatatattcctctgtggggtttcctattgctattgtggtttcgatgtgagacttaagctgtttgaacaatcttgttgcatttctttgctcctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8422417 |
tatcctttatatattcctctgtggggttcccaattgctattgttgtttcaatctgggacttaagctgtttgaacaatcttgttgcatttctttgctcctc |
8422318 |
T |
|
| Q |
101 |
agcaagttgtgaaggttggattttgttcatgataattaacataccggtagaagctgagaataaaagtgccgaagataatttgagggctaaaagaggagcg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8422317 |
agcaagttgtgaaggttggattttgttcatgataattaacataccagtagaagctgagaataaaagtgcggaagataatttgagggctaaaagaggagca |
8422218 |
T |
|
| Q |
201 |
ccggagccgcttatggctgatatacctgccatggcggtggcggtgagagggatcatgttgatggggtttaatagaaggggattcaaattatcgcgttgtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| ||||||||||||||| |
|
|
| T |
8422217 |
ccggagccgcttatggctgatatacctgccatggcggtggcggtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgtt |
8422118 |
T |
|
| Q |
301 |
cgccaatgttttgatgcatctctattctgtcggatacagattcaagaattgcatagagttgagtaatggtttttgtttttgtgtttggtgatttagaaga |
400 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8422117 |
cgccaatgttttgatgcatttctattctgtcggatacagattcaagaattgcatagagttgagtaatggtttttgtttttgtttttggtgatttagaaga |
8422018 |
T |
|
| Q |
401 |
aggagaattgtacttgggtgaataatgataatcattttcttgaatcattattgggattgtatgtgcaagttggccgtttattaactcctcaaatagtttt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |||| || ||||| || || |
|
|
| T |
8422017 |
aggagaattgtacttgggtgaataatgataatcattttcttgaatcattattgggattgtgtgtatgagttgaccgt---ttaattcttcaaacagcttc |
8421921 |
T |
|
| Q |
501 |
ctacttggtcttgtttttggaactatggaaagaaccttagggagttttgggacattgaaagatgattt |
568 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||| ||||| |
|
|
| T |
8421920 |
ctgcttggtcttgtttttggaactatggaaagagctttagggagttttggaacattgaaagaggattt |
8421853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 8375634 - 8375568
Alignment:
| Q |
69 |
ttgaacaatcttgttgcatttctttgctcctcagcaagttgtgaaggttggattttgttcatgataa |
135 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| || | ||| ||||||||||||||||||||||||| |
|
|
| T |
8375634 |
ttgaacaatcttgtagcatttctttgttcctcggccaattgagaaggttggattttgttcatgataa |
8375568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 8395323 - 8395253
Alignment:
| Q |
66 |
tgtttgaacaatcttgttgcatttctttgctcctcagcaagttgtgaaggttggattttgttcatgataat |
136 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| | ||||| || ||||||||||||||||||||||| |
|
|
| T |
8395323 |
tgtttgaacaatcttgtagcatttctttgttcctctgtgagttgagagggttggattttgttcatgataat |
8395253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 8439469 - 8439535
Alignment:
| Q |
69 |
ttgaacaatcttgttgcatttctttgctcctcagcaagttgtgaaggttggattttgttcatgataa |
135 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| || | ||| ||||||||||||||||||||||||| |
|
|
| T |
8439469 |
ttgaacaatcttgtagcatttctttgttcctcggccaattgagaaggttggattttgttcatgataa |
8439535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 8406249 - 8406318
Alignment:
| Q |
66 |
tgtttgaacaatcttgttgcatttctttgctcctcagcaagttgtgaaggttggattttgttcatgataa |
135 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| | ||||| || |||||||||||||||||||||| |
|
|
| T |
8406249 |
tgtttgaacaatcttgtagcatttctttgttcctctgtgagttgagagggttggattttgttcatgataa |
8406318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 8412372 - 8412438
Alignment:
| Q |
69 |
ttgaacaatcttgttgcatttctttgctcctcagcaagttgtgaaggttggattttgttcatgataa |
135 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| | ||||| || |||||||||||||||||||||| |
|
|
| T |
8412372 |
ttgaacaatcttgtagcatttctttgttcctctgtgagttgagagggttggattttgttcatgataa |
8412438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 8434470 - 8434536
Alignment:
| Q |
69 |
ttgaacaatcttgttgcatttctttgctcctcagcaagttgtgaaggttggattttgttcatgataa |
135 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| | ||||| || |||||||||||||||||||||| |
|
|
| T |
8434470 |
ttgaacaatcttgtagcatttctttgttcctctgtgagttgagagggttggattttgttcatgataa |
8434536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 294 - 362
Target Start/End: Complemental strand, 8394849 - 8394781
Alignment:
| Q |
294 |
cgttgttcgccaatgttttgatgcatctctattctgtcggatacagattcaagaattgcatagagttga |
362 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| ||||||| ||| | | ||||||||||||| |
|
|
| T |
8394849 |
cgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttga |
8394781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 294 - 362
Target Start/End: Complemental strand, 8395092 - 8395024
Alignment:
| Q |
294 |
cgttgttcgccaatgttttgatgcatctctattctgtcggatacagattcaagaattgcatagagttga |
362 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| ||||||| ||| | | ||||||||||||| |
|
|
| T |
8395092 |
cgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttga |
8395024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 294 - 362
Target Start/End: Original strand, 8406480 - 8406548
Alignment:
| Q |
294 |
cgttgttcgccaatgttttgatgcatctctattctgtcggatacagattcaagaattgcatagagttga |
362 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| ||||||| ||| | | ||||||||||||| |
|
|
| T |
8406480 |
cgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttga |
8406548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 294 - 362
Target Start/End: Original strand, 8412600 - 8412668
Alignment:
| Q |
294 |
cgttgttcgccaatgttttgatgcatctctattctgtcggatacagattcaagaattgcatagagttga |
362 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| ||||||| ||| | | ||||||||||||| |
|
|
| T |
8412600 |
cgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttga |
8412668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 294 - 362
Target Start/End: Original strand, 8434698 - 8434766
Alignment:
| Q |
294 |
cgttgttcgccaatgttttgatgcatctctattctgtcggatacagattcaagaattgcatagagttga |
362 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| ||||||| ||| | | ||||||||||||| |
|
|
| T |
8434698 |
cgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttga |
8434766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 8417587 - 8417653
Alignment:
| Q |
69 |
ttgaacaatcttgttgcatttctttgctcctcagcaagttgtgaaggttggattttgttcatgataa |
135 |
Q |
| |
|
|||||||||||||| | |||| ||||||||| || | ||| ||||||||||||||||||||||||| |
|
|
| T |
8417587 |
ttgaacaatcttgtagtgtttcattgctcctcggccaattgagaaggttggattttgttcatgataa |
8417653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 8431400 - 8431466
Alignment:
| Q |
69 |
ttgaacaatcttgttgcatttctttgctcctcagcaagttgtgaaggttggattttgttcatgataa |
135 |
Q |
| |
|
|||||||||||||| ||||| ||||| || || | ||||| || |||||||||||||||||||||| |
|
|
| T |
8431400 |
ttgaacaatcttgtggcattcctttgttcttctgtgagttgagagggttggattttgttcatgataa |
8431466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 8431629 - 8431670
Alignment:
| Q |
298 |
gttcgccaatgttttgatgcatctctattctgtcggatacag |
339 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
8431629 |
gttcgccaatgttgtgatgcatttctattctgtctgatacag |
8431670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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