View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5017_high_11 (Length: 313)
Name: NF5017_high_11
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5017_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 30 - 291
Target Start/End: Complemental strand, 8922664 - 8922403
Alignment:
| Q |
30 |
ggagtgtcgaagattcgaccaagttcacgttaacaggaggttttgatggtaatattctatttcactaatgtaccagagcatttataatatgctgagttga |
129 |
Q |
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| T |
8922664 |
ggagtgtcgaagattcgaccaagttcacgttaacaggaggttttgatggtaacattctatttcactaatgtaccagagcatttataatatgctgagttga |
8922565 |
T |
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| Q |
130 |
ggaagggtttaaaggtttgtggtattttgtcagacgtatacgtgtcccggagtagaaatgctagtgaacaactgtttggtttttctgtttcactaatgtg |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
8922564 |
ggaagggtttaaaggtttgtggtattttgtcagacgtatacgtgtcccggagtagaaatgctagtgaacaactatttggtttttgtgtttcactaatgtg |
8922465 |
T |
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| Q |
230 |
tgaaacgttgacaaactgaaaaaagcactgaacaaattgtactttggtcaacaactgatacg |
291 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8922464 |
tgaaacattgacaaactgaaaaaagcactgaacaaattgtacttttgtcaacaactgatacg |
8922403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 30 - 289
Target Start/End: Complemental strand, 8957751 - 8957491
Alignment:
| Q |
30 |
ggagtgtcgaagattcgaccaagttcacgttaacaggaggttttgatggtaatattctatttcactaatgtaccagagcatttataatatgctgagttga |
129 |
Q |
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||||||||||||| |||| ||||||||||| || |||| | ||||||||||| |||||||||||||||||||||| ||||||||||||||| |||| ||| |
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| T |
8957751 |
ggagtgtcgaagactcgatcaagttcacgtcaataggaagctttgatggtaacattctatttcactaatgtaccaaagcatttataatatgttgagctga |
8957652 |
T |
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| Q |
130 |
ggaagggtttaaaggtttgtggtattttgtcagacgtatacgtgtcccggagtagaaatgctagtgaacaactgtttggtttt-tctgtttcactaatgt |
228 |
Q |
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| T |
8957651 |
ggaagagtttggaggtttgtggtattttggcagacgtatatgtgtcccgagatagaaatgctagtgaacaagtgtttggttttgtgtgcttcactaatgt |
8957552 |
T |
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| Q |
229 |
gtgaaacgttgacaaactgaaaaaagcactgaacaaattgtactttggtcaacaactgata |
289 |
Q |
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| ||| ||||||| |||| ||||||||||||||| |||||||||||||||||| |||| |
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| T |
8957551 |
gcaaaattatgacaaattgaataaagcactgaacaaagtgtactttggtcaacaacggata |
8957491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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