View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5017_high_12 (Length: 303)
Name: NF5017_high_12
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5017_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 7 - 288
Target Start/End: Original strand, 31027679 - 31027960
Alignment:
| Q |
7 |
tcgaagaaaatattccccaaaattgaaacaaaatactagccttgcaaaattcaattcattatggtggttgttgttgagtgttttgtgttctttaattgag |
106 |
Q |
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| T |
31027679 |
tcgaacaaaatattccccaaaattgaaacaaaatactagccttgcaaaattaaattcattatgatagttgttgttgagtgttttgtgttctttaattgag |
31027778 |
T |
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| Q |
107 |
agatgggttctgggttcttcaatttcatatgaagttgttgttgttaaacgttgatgttgtgagttacaaaattgaactaaacacacctcaaaatcgaaac |
206 |
Q |
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| T |
31027779 |
agatgggttctgggttcttcaatttcatatgaagttgttgttgttaaacgttgatgttgtgagttacaaaattgaactaaacacacgtcaaaatcgaaac |
31027878 |
T |
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| Q |
207 |
aaaatataaatttgcaaactcagattcattagggttgttgttgttgtgtgttctgggttcttcaaattgagtgatgaattat |
288 |
Q |
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| T |
31027879 |
aaaatataaacttgcaaactcagattcattagggttgttgttgttgtgtgttctgggttcttcaaattgagtgatgaattat |
31027960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 289
Target Start/End: Original strand, 31034580 - 31034861
Alignment:
| Q |
7 |
tcgaagaaaatattccccaaaattgaaacaaaatactagccttgcaaaattcaattcattatggtggttgttgttgagtgttttgtgttctttaattgag |
106 |
Q |
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| T |
31034580 |
tcgaacaaaatattccccaaaattgaaacaaaataccagccttgcaaaattcaattcgttatggtagttgttgttgagtattttgtgttctttaattgag |
31034679 |
T |
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| Q |
107 |
agatgggttctgggttcttcaatttcatatgaagttgttgttgttaaacgttgatgttgtgagttacaaaattgaactaaacacacctcaaaatcgaaac |
206 |
Q |
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| T |
31034680 |
agatgggttttgggttcttcaatttcatatgaagttgttgttgttaaac-ttgatgttgtgtgttacaaaattgaactaaacaaacctcaaaatcgaaac |
31034778 |
T |
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| Q |
207 |
aaaatataaatttgcaaactcagattcattagggttgttgttgttgtgtgttctgggttcttcaaattgagtgatgaattatg |
289 |
Q |
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| T |
31034779 |
aaaatataaacttgcaaacttagattcatttgggtagttgttgttgtgtgttcttggttcttcaaattgagtgatgaattatg |
31034861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 31034767 - 31034893
Alignment:
| Q |
24 |
caaaattgaaacaaaatactagccttgcaaaattcaattcattatggtggttgttgttgagtgttttgtgttctttaa-ttgagagatgggttctgggtt |
122 |
Q |
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| T |
31034767 |
caaaatcgaaacaaaata-taaacttgcaaacttagattcatttgggtagttgttgttgtgtgttcttggttcttcaaattgagtgatgaattatgggtt |
31034865 |
T |
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| Q |
123 |
cttcaatttcatatgaagttgttgttgt |
150 |
Q |
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| T |
31034866 |
cttcaatttcagaggaagttgttgttgt |
31034893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 118 - 289
Target Start/End: Complemental strand, 13435638 - 13435464
Alignment:
| Q |
118 |
gggttcttcaatttcatatgaag-ttgttgttgttaaacgttgatgttgtgagttacaaaattgaactaaacacacctcaaaatcgaaacaaaatataaa |
216 |
Q |
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|||||||||||| ||||| ||| || ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13435638 |
gggttcttcaatatcataggaaaatttttgttgttaaatgttgttgttgtgagttacaaaattgaactaaacacacctcaaaatcgaaacaaaatataac |
13435539 |
T |
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| Q |
217 |
tttgcaaactcagattcattagggttgttgttg---ttgtgtgttctgggttcttcaaattgagtgatgaattatg |
289 |
Q |
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| T |
13435538 |
cttgcaaactcatattcattagggaagttgttgttgttgtgtgctttgggttcttc-aattgagtgatgaattatg |
13435464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 32687752 - 32687680
Alignment:
| Q |
77 |
ttgttgagtgttttgtgttctttaattgagagatgggttctgggttcttcaatttcatatgaagttgttgttg |
149 |
Q |
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| T |
32687752 |
ttgttgtgtgttctatgttcttcaattgagagatgaattttggattcttcaatttcagaggaagttgtagttg |
32687680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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