View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5017_high_16 (Length: 242)
Name: NF5017_high_16
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5017_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 42376880 - 42377106
Alignment:
| Q |
1 |
caacacacaaaaatttctccaagtctggtgttgcgaaaaatgatcgacgaagagagaaatttgaaagcaccctttgtttctttggtgctggtggacatgt |
100 |
Q |
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| T |
42376880 |
caacacacaaaaatttctccaagtctggtgttgcgaaaaatgatcgacgaagagagaaatttgaaagcaccctttgtttctttggtgctggtggacatgt |
42376979 |
T |
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| Q |
101 |
ggaaatttctggtatccgaaattttttaccttttggcgttgagcataaactgttacttgtgatggagacatcatcaacaaccttaacagaatccatgttt |
200 |
Q |
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| T |
42376980 |
ggaaatttctggtatccgaaattttttaccttttggcgttgagcataaactgttacttgtgatggagacatcatcaacaaccttaacagaatccatgttt |
42377079 |
T |
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| Q |
201 |
gaggaacaattttcagaggatgtttct |
227 |
Q |
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| T |
42377080 |
gaggaacaattttcagaggatgtttct |
42377106 |
T |
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Back To:
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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 155
Target Start/End: Original strand, 24578829 - 24578926
Alignment:
| Q |
58 |
aatttgaaagcaccctttgtttctttggtgctggtggacatgtggaaatttctggtatccgaaattttttaccttttggcgttgagcataaactgtta |
155 |
Q |
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| T |
24578829 |
aatttgaaactaccctttgtttctttggtgctggaggacatgttgaaatctctggtatcctatatttctgaccttttggtgttgaacatgcactgtta |
24578926 |
T |
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