View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5017_high_3 (Length: 494)
Name: NF5017_high_3
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5017_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 15 - 480
Target Start/End: Original strand, 36784428 - 36784890
Alignment:
| Q |
15 |
tatccaaatttagtgaccaacgagagaattggagataaaaacattttcgtctccattattggattttattttttccgcgaagtataaataaagtgaacct |
114 |
Q |
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| T |
36784428 |
tatccaaatttagtgacgagcgagagaattgaagataaaaacattttcgtctccattgttggattttatttttcccgcgaagtataaataaagtgaacct |
36784527 |
T |
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| Q |
115 |
cannnnnnnnnnnnaatgatcttaatttatttgtcagacattttttaaacgaacaatgttagtacttaattaattaattgtcagaacccaaggcctccaa |
214 |
Q |
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| T |
36784528 |
cattttttttt---aatgatcttaatttatttgtcagacattttttaaacgaacaatgttagtacttaattaattaattgtcagaacccaaggcgtccaa |
36784624 |
T |
|
| Q |
215 |
cattttaactcttaactaaaattagttgattgttctaatcacccaacactctcattctttttaattttcaattcccgaagnnnnnnnnnnctaccacata |
314 |
Q |
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| T |
36784625 |
cattttaactcttaactaaaattagttgattgttctaatcccccaacactctcattctttttaatttgcaattcccgaagaaaaaaaaaactaccacata |
36784724 |
T |
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| Q |
315 |
tttaaaacnnnnnnngatcataagtagagttatcatattaattagggtagaagagggacaaaaagaataatcttgcaactaaacatttaacgcaaaatag |
414 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36784725 |
tttaaaactttttttgatcataagtagagttatcatattaattagggtagaagagggacaaaaagaataatcttgcaactaaacatttaacgcaaaatag |
36784824 |
T |
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| Q |
415 |
tgaattacaaaatatgaaatatatatctcttattgaagtgaattttgtgatcttgatcaaaaattg |
480 |
Q |
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| T |
36784825 |
tgaattacaaaatatgaaatatatatctcttattgaagtgaattttgtgatcttgatcaaaaattg |
36784890 |
T |
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