View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5017_high_4 (Length: 464)
Name: NF5017_high_4
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5017_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 30 - 452
Target Start/End: Complemental strand, 38249913 - 38249491
Alignment:
| Q |
30 |
atataatacatgtgatataatatcaacaattgaatttatttatgaaacattgacatagactttcccattactttgagcggtacaagtatagacctatatt |
129 |
Q |
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| T |
38249913 |
atataatacatgtaatataatatcaacaattgaatttatttatgaaacattgacatagactttcccattactttgagcggtacaagtatagacctatatt |
38249814 |
T |
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| Q |
130 |
aaaatgaaagaatgaagaagtcatgctaataataaattctgatattgctttcccgagtgtgaaatgaaagattgtgaagaacattatcatgtgatgatga |
229 |
Q |
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| T |
38249813 |
aaaatgaaagaatgaagaagtcatgctaataataaattctgatattgctttcccgagtgtgaaatgaaagattgtgaagaacattatcatgtgatgatga |
38249714 |
T |
|
| Q |
230 |
tgaggtgggtctcaggtacattttctatataaaaatacttcgaatagtagctagttttctcgtcaaacaaagctcaactctgccatttccaaactatctt |
329 |
Q |
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| T |
38249713 |
tgaggtgggtctcaggtacattttctatataaaaatacttcgaatagtagctagttttctcgtcaaacaaagctcaactctgccatttccaaactatctt |
38249614 |
T |
|
| Q |
330 |
tctgaggaacgcaactcaagccattccatcttctcttctgcatgcttttgctccgtattgattgtgttcaaactatgttttttcatgcatatttgtgtag |
429 |
Q |
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| T |
38249613 |
tctgaggaacgcaactcaagccattccatcttctcttctgcatgcttttgctccgtattgattgtgttcaaactatgttttttcatgcatatttgtgtag |
38249514 |
T |
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| Q |
430 |
tttatcttgccctttttaatatt |
452 |
Q |
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| T |
38249513 |
tttatcttgccttttttaatatt |
38249491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 38249977 - 38249944
Alignment:
| Q |
19 |
acaaacaaataatataatacatgtgatataatat |
52 |
Q |
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| T |
38249977 |
acaaacaaataatataatacatgtgatatgatat |
38249944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 366
Target Start/End: Complemental strand, 18559900 - 18559846
Alignment:
| Q |
315 |
tttccaaactatctttct---gaggaacgcaactcaagccattccatcttctctt |
366 |
Q |
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| T |
18559900 |
tttccaaactatctttcttctgaggtacgcaactcaagccatttcatcttctctt |
18559846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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