View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5017_high_5 (Length: 455)
Name: NF5017_high_5
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5017_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 437
Target Start/End: Original strand, 13306018 - 13306440
Alignment:
| Q |
13 |
aatattatcattgaatttgatggtctaactcgaaattgctcaccatttaatcacgtgtgtctgatatttagcacattgagattatctagttgctccatat |
112 |
Q |
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| T |
13306018 |
aatattatcattgaatttgatggtctaactcgaaattgctcaccatttaatcacgtgtgtctgatatttagcacattgagattatctagttgctccatat |
13306117 |
T |
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| Q |
113 |
tcttttgataactcaattcctatctaataacttttattgctcaagtatatgtttaaggattcaatttttggctcaaggcttaatcatttaaaaatttatg |
212 |
Q |
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| T |
13306118 |
tcttt-gataactcaattcctatctaataactttgattgctcaagtatatgtttaaggattcaatttttggctcaaggcttaatcatttaaaaatttatg |
13306216 |
T |
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| Q |
213 |
tttcacagtaccaaatttttatatatgcttaagtaaaatattgaatccataaacacataatcccttcgtcctaaaatataagtaacnnnnnnnntcacat |
312 |
Q |
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| T |
13306217 |
tttcacagtaccaaatttttatatatgctcaagtaaaatattgaatccataaacacatactcccttcgtcctaaaatataagtaacaaaaaaaatcacat |
13306316 |
T |
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| Q |
313 |
ttattnnnnnnntaatcatccttcattatttactctaattttatcaaataaaattacaatattcttaaattacccatgcactcatcgaaaccaaaacaat |
412 |
Q |
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| T |
13306317 |
ttattaaaaaaataatcatccttcattatttactctaattttatcaaa-aaaattacaatattcttaaattacccatgcactcatcgaaaccaaaacaat |
13306415 |
T |
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| Q |
413 |
aaattattactagcatattaaaaac |
437 |
Q |
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| T |
13306416 |
aaattattactagcatattaaaaac |
13306440 |
T |
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